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bootscanning analyses  (Simplot Science)

 
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    Structured Review

    Simplot Science bootscanning analyses
    ( A ) Subtype H branch of the ML tree from B. The red dot and number indicate the basal node of the branch with bootstrap value. ( B ) Similarity plot of the genome from specimen 146 (most basal H on the tree) comparing similarity between subtypes. ( C ) Bootscan of the genome from specimen 146 showing no evidence of recombination between subtypes. For SimPlot analysis in ( B , C ), all pure H subtypes from this study were included as references, and a window of 500 bp and step of 50 bp were used. For <t>bootscanning,</t> 1000 bootstrap replicates were used. To more clearly indicate sequences generated in this study, “_drc” was added to the specimen IDs in the figure. Subtype reference consensus sequences were used for SimPlot and Bootscan analyses.
    Bootscanning Analyses, supplied by Simplot Science, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Average 86 stars, based on 1 article reviews
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    Images

    1) Product Images from "Next-Generation Sequencing Reveals Continued Circulation of Rare HIV-1 Subtypes in the Democratic Republic of the Congo and Refines the Estimate of the Emergence Dates of Three Subtypes"

    Article Title: Next-Generation Sequencing Reveals Continued Circulation of Rare HIV-1 Subtypes in the Democratic Republic of the Congo and Refines the Estimate of the Emergence Dates of Three Subtypes

    Journal: Viruses

    doi: 10.3390/v18020268

    ( A ) Subtype H branch of the ML tree from B. The red dot and number indicate the basal node of the branch with bootstrap value. ( B ) Similarity plot of the genome from specimen 146 (most basal H on the tree) comparing similarity between subtypes. ( C ) Bootscan of the genome from specimen 146 showing no evidence of recombination between subtypes. For SimPlot analysis in ( B , C ), all pure H subtypes from this study were included as references, and a window of 500 bp and step of 50 bp were used. For bootscanning, 1000 bootstrap replicates were used. To more clearly indicate sequences generated in this study, “_drc” was added to the specimen IDs in the figure. Subtype reference consensus sequences were used for SimPlot and Bootscan analyses.
    Figure Legend Snippet: ( A ) Subtype H branch of the ML tree from B. The red dot and number indicate the basal node of the branch with bootstrap value. ( B ) Similarity plot of the genome from specimen 146 (most basal H on the tree) comparing similarity between subtypes. ( C ) Bootscan of the genome from specimen 146 showing no evidence of recombination between subtypes. For SimPlot analysis in ( B , C ), all pure H subtypes from this study were included as references, and a window of 500 bp and step of 50 bp were used. For bootscanning, 1000 bootstrap replicates were used. To more clearly indicate sequences generated in this study, “_drc” was added to the specimen IDs in the figure. Subtype reference consensus sequences were used for SimPlot and Bootscan analyses.

    Techniques Used: Generated



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    bootscanning analyses  (Simplot Science)
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    Simplot Science bootscanning analyses
    ( A ) Subtype H branch of the ML tree from B. The red dot and number indicate the basal node of the branch with bootstrap value. ( B ) Similarity plot of the genome from specimen 146 (most basal H on the tree) comparing similarity between subtypes. ( C ) Bootscan of the genome from specimen 146 showing no evidence of recombination between subtypes. For SimPlot analysis in ( B , C ), all pure H subtypes from this study were included as references, and a window of 500 bp and step of 50 bp were used. For <t>bootscanning,</t> 1000 bootstrap replicates were used. To more clearly indicate sequences generated in this study, “_drc” was added to the specimen IDs in the figure. Subtype reference consensus sequences were used for SimPlot and Bootscan analyses.
    Bootscanning Analyses, supplied by Simplot Science, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/bootscanning analyses/product/Simplot Science
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    bootscan analyses  (Simplot Science)
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    Similarity plot and <t>bootscan</t> analyses of the CVA4 strains in this study with the reference strains. Similarity plot and bootscan profiles were indistinguishable among isolates YT13, LY10, LY25, LY32 and LY36; therefore, only the representative plots for LY10 are shown.
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    similarity plot and bootscan analyses  (Simplot Science)
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    Similarity plot and <t>bootscan</t> analyses of the CVA4 strains in this study with the reference strains. Similarity plot and bootscan profiles were indistinguishable among isolates YT13, LY10, LY25, LY32 and LY36; therefore, only the representative plots for LY10 are shown.
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    bootscan analyses implemented in  (Simplot Science)
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    Simplot Science bootscan analyses implemented in
    Similarity plot and <t>bootscan</t> analyses of the CVA4 strains in this study with the reference strains. Similarity plot and bootscan profiles were indistinguishable among isolates YT13, LY10, LY25, LY32 and LY36; therefore, only the representative plots for LY10 are shown.
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    Image Search Results


    ( A ) Subtype H branch of the ML tree from B. The red dot and number indicate the basal node of the branch with bootstrap value. ( B ) Similarity plot of the genome from specimen 146 (most basal H on the tree) comparing similarity between subtypes. ( C ) Bootscan of the genome from specimen 146 showing no evidence of recombination between subtypes. For SimPlot analysis in ( B , C ), all pure H subtypes from this study were included as references, and a window of 500 bp and step of 50 bp were used. For bootscanning, 1000 bootstrap replicates were used. To more clearly indicate sequences generated in this study, “_drc” was added to the specimen IDs in the figure. Subtype reference consensus sequences were used for SimPlot and Bootscan analyses.

    Journal: Viruses

    Article Title: Next-Generation Sequencing Reveals Continued Circulation of Rare HIV-1 Subtypes in the Democratic Republic of the Congo and Refines the Estimate of the Emergence Dates of Three Subtypes

    doi: 10.3390/v18020268

    Figure Lengend Snippet: ( A ) Subtype H branch of the ML tree from B. The red dot and number indicate the basal node of the branch with bootstrap value. ( B ) Similarity plot of the genome from specimen 146 (most basal H on the tree) comparing similarity between subtypes. ( C ) Bootscan of the genome from specimen 146 showing no evidence of recombination between subtypes. For SimPlot analysis in ( B , C ), all pure H subtypes from this study were included as references, and a window of 500 bp and step of 50 bp were used. For bootscanning, 1000 bootstrap replicates were used. To more clearly indicate sequences generated in this study, “_drc” was added to the specimen IDs in the figure. Subtype reference consensus sequences were used for SimPlot and Bootscan analyses.

    Article Snippet: Sequences branching basal to reference subtypes/CRFs were analyzed for evidence of recombination using Simplot v3.5.1 ( https://sray.med.som.jhmi.edu/SCRoftware/SimPlot/ , accessed on 15 July 2025) for similarity plot and bootscanning analyses as previously described [ , ].

    Techniques: Generated

    Similarity plot and bootscan analyses of the CVA4 strains in this study with the reference strains. Similarity plot and bootscan profiles were indistinguishable among isolates YT13, LY10, LY25, LY32 and LY36; therefore, only the representative plots for LY10 are shown.

    Journal: Scientific Reports

    Article Title: Whole-genome analysis of CVA4 in children with herpangina in two cities of Shandong, China

    doi: 10.1038/s41598-026-39455-x

    Figure Lengend Snippet: Similarity plot and bootscan analyses of the CVA4 strains in this study with the reference strains. Similarity plot and bootscan profiles were indistinguishable among isolates YT13, LY10, LY25, LY32 and LY36; therefore, only the representative plots for LY10 are shown.

    Article Snippet: To validate these events and precisely map the recombination breakpoints, similarity plot and bootscan analyses were subsequently performed using Simplot (v3.5.1) (Fig. ).

    Techniques: