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minimum spanning trees generated in bionumerics software v.7.6  (Applied Maths)

 
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    Applied Maths minimum spanning trees generated in bionumerics software v.7.6
    Minimum Spanning Trees Generated In Bionumerics Software V.7.6, supplied by Applied Maths, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/bionumerics+v%2E7%2E6+software/minimum+spanning+tree+bionumerics+version+6+6/pm40430727-85-15-18
    Average 90 stars, based on 1 article reviews
    minimum spanning trees generated in bionumerics software v.7.6 - by Bioz Stars, 2026-10
    90/100 stars

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    other:

    Article Title: Molecular characterisation of methicillin-resistant Staphylococcus aureus from chronically colonised cystic fibrosis paediatric patients in Brazil
    Article Snippet: Assembled spa sequences were analysed using the spa -plugin in the Bionumerics v.7.6 software (Applied Maths).

    Article Title: Molecular characterisation of an outbreak of NDM-7-producing Klebsiella pneumoniae reveals ST11 clone expansion combined with interclonal plasmid dissemination.
    Article Snippet: A dendrogram was created using BioNumercs v.7.6 software (Applied Maths, Marcy-l’Étoile, France) using the ice coefficient and position tolerance settings of 1% optimisation nd 1.2% band position tolerance.

    Article Title: Emerging Cases of Cat-Transmitted Sporotrichosis Driven by Sporothrix brasiliensis in Northeast Brazil.
    Article Snippet: Most cases were from cats in the cities of Olinda (408/1,176; 34.70%), Jaboatão dos Guararapes (332/1,176; 28.23%), and Recife (237/1,176; 20.15%).. Molecular typing using amplified fragment length polymorphism (EcoRI-GA/MseI-AG) revealed low polymorphic information content (PIC = 0.2499) and heterozygosity (H = 0.2928), typical of an outbreak scenario.. Dendrogram and multivariate cluster analysis revealed that isolates from Pernambuco are closely related to Rio de Janeiro isolates.

    Software:

    Article Title: Novel genotypes of Coxiella burnetii circulating in rats in Yunnan Province, China
    Article Snippet: .. Clustering of the obtained MLVA profiles was performed with Bionumerics v.7.6 software (Applied Maths, Belgium). ..

    Article Title: Disruption of mgrB gene by IS kpn14 sourced from a bla KPC−2 carrying plasmid mediating polymyxin resistance against carbapenem-resistant Klebsiella pneumoniae during treatment: study on the underlying mechanisms
    Article Snippet: .. Clusters were assigned with a 2-band difference threshold, and the dendrogram was generated using BioNumerics v.7.6 software (Applied Maths, Marcy-l’Étoile, France) [ ]. .. K. pneumoniae strains KP31157 and KP31311 underwent complete genome sequencing via Illumina NovaSeq PE150 (for both) and nanopore sequencing on MinION flow cells (for KP31311 only).

    Article Title: Whole-genome analysis to describe a human adenovirus D8 conjunctivitis outbreak in a tertiary hospital.
    Article Snippet: Correspondence Elisenda Miro, Servei de Microbiologia, Institut d'Investigació Biomèdica Sant Pau, C/Sant Quintí num.. 77‐79, Planta 1‐Despatx 108, 08041 Barcelona, Spain.. Email: emiro@santpau.cat Abstract Conjunctivitis is a frequent ocular disorder caused by human adenoviruses (HAdVs).

    Article Title: Molecular detection of Coxiella burnetii in small ruminants and genotyping of specimens collected from goats in Poland
    Article Snippet: .. Clustering of the obtained MLVA profiles was performed with Bionumerics v.7.6 software (Applied Maths, USA). ..

    Article Title: Interhospital Spread of bla VIM-1 - and bla CTX-M-15 -Producing K. pneumoniae ST15 on an IncR Plasmid in Southern Spain
    Article Snippet: .. A dendrogram was created using BioNumerics v.7.6 software (Applied Maths, Marcy-l’Étoile, France) using the Dice coefficient with 0.8% optimization and 1% band-position tolerance ( ). ..

    Generated:

    Article Title: Disruption of mgrB gene by IS kpn14 sourced from a bla KPC−2 carrying plasmid mediating polymyxin resistance against carbapenem-resistant Klebsiella pneumoniae during treatment: study on the underlying mechanisms
    Article Snippet: .. Clusters were assigned with a 2-band difference threshold, and the dendrogram was generated using BioNumerics v.7.6 software (Applied Maths, Marcy-l’Étoile, France) [ ]. .. K. pneumoniae strains KP31157 and KP31311 underwent complete genome sequencing via Illumina NovaSeq PE150 (for both) and nanopore sequencing on MinION flow cells (for KP31311 only).



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    Applied Maths bionumerics software. v.7.6
    The dendrogram depicts the cluster profile generated by the AFLP method. The dataset consisted of 46 S. brasiliensis isolates (38 clinical isolates from Paraíba and 8 reference strains), 6 S. schenckii (reference strains), 6 S. globosa (reference strains). The dendrograms were constructed using the Jaccard similarity coefficient and UPGMA clustering algorithm in <t>BioNumerics</t> software v7.6.
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    Applied Maths bionumerics software v.7.6
    The dendrogram depicts the cluster profile generated by the AFLP method. The dataset consisted of 46 S. brasiliensis isolates (38 clinical isolates from Paraíba and 8 reference strains), 6 S. schenckii (reference strains), 6 S. globosa (reference strains). The dendrograms were constructed using the Jaccard similarity coefficient and UPGMA clustering algorithm in <t>BioNumerics</t> software v7.6.
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    The dendrogram depicts the cluster profile generated by the AFLP method. The dataset consisted of 46 S. brasiliensis isolates (38 clinical isolates from Paraíba and 8 reference strains), 6 S. schenckii (reference strains), 6 S. globosa (reference strains). The dendrograms were constructed using the Jaccard similarity coefficient and UPGMA clustering algorithm in BioNumerics software v7.6.

    Journal: Journal of Fungi

    Article Title: Analyses of the Genetic Diversity and Population Structures of Sporothrix spp. Clinical Isolates from Paraíba, Brazil

    doi: 10.3390/jof10120848

    Figure Lengend Snippet: The dendrogram depicts the cluster profile generated by the AFLP method. The dataset consisted of 46 S. brasiliensis isolates (38 clinical isolates from Paraíba and 8 reference strains), 6 S. schenckii (reference strains), 6 S. globosa (reference strains). The dendrograms were constructed using the Jaccard similarity coefficient and UPGMA clustering algorithm in BioNumerics software v7.6.

    Article Snippet: Fragment analysis was performed using the BioNumerics software. v.7.6 (Applied Maths, Sint-Martens-Latem, Belgium).

    Techniques: Generated, Construct, Software

    The dendrogram depicts the cluster profile generated by the AFLP method. The dataset consisted of 46 S. brasiliensis isolates (38 clinical isolates from Paraíba and 8 reference strains), 6 of S. schenckii (reference strains), 6 of S. globosa (reference strains). The dendrograms were constructed using the Jaccard similarity coefficient and UPGMA clustering algorithm in BioNumerics software v7.6.

    Journal: Journal of Fungi

    Article Title: Analyses of the Genetic Diversity and Population Structures of Sporothrix spp. Clinical Isolates from Paraíba, Brazil

    doi: 10.3390/jof10120848

    Figure Lengend Snippet: The dendrogram depicts the cluster profile generated by the AFLP method. The dataset consisted of 46 S. brasiliensis isolates (38 clinical isolates from Paraíba and 8 reference strains), 6 of S. schenckii (reference strains), 6 of S. globosa (reference strains). The dendrograms were constructed using the Jaccard similarity coefficient and UPGMA clustering algorithm in BioNumerics software v7.6.

    Article Snippet: Fragment analysis was performed using the BioNumerics software. v.7.6 (Applied Maths, Sint-Martens-Latem, Belgium).

    Techniques: Generated, Construct, Software

    Minimum Spanning Tree (MST) derived from AFLP data. ( A ) In the #3 EcoRI-GA/MseI-TT combination and ( B ) In the #5 EcoRI-GA/MseI-AG combination. The dataset consisted of 46 S. brasiliensis isolates (38 clinical isolates from Paraíba and 8 reference strains), 6 of S. schenckii (reference strains), 6 of S. globosa (reference strains). The dotted lines represent the cluster profile obtained by the AFLP method of S. brasiliensis isolates from Paraíba. * Isolates from Paraíba. The analysis was performed using the BioNumerics software v7.6.

    Journal: Journal of Fungi

    Article Title: Analyses of the Genetic Diversity and Population Structures of Sporothrix spp. Clinical Isolates from Paraíba, Brazil

    doi: 10.3390/jof10120848

    Figure Lengend Snippet: Minimum Spanning Tree (MST) derived from AFLP data. ( A ) In the #3 EcoRI-GA/MseI-TT combination and ( B ) In the #5 EcoRI-GA/MseI-AG combination. The dataset consisted of 46 S. brasiliensis isolates (38 clinical isolates from Paraíba and 8 reference strains), 6 of S. schenckii (reference strains), 6 of S. globosa (reference strains). The dotted lines represent the cluster profile obtained by the AFLP method of S. brasiliensis isolates from Paraíba. * Isolates from Paraíba. The analysis was performed using the BioNumerics software v7.6.

    Article Snippet: Fragment analysis was performed using the BioNumerics software. v.7.6 (Applied Maths, Sint-Martens-Latem, Belgium).

    Techniques: Derivative Assay, Software

    Principal component analysis (PCA) and multidimensional scaling (MDS). ( A , B ) In the #3 EcoRI-GA/MseI-TT combination and ( C , D ) In the #5 EcoRI-GA/MseI-AG combination The dataset consists of 46 isolates of S. brasiliensis (38 clinical isolates from Paraíba and eight reference strains), six of S. schenckii (reference strains), six of S. globosa (reference strains). The isolates were plotted in three-dimensional space and coloured according to genetic groups. The dotted lines represent the cluster profile obtained by the AFLP method of S. brasiliensis isolates from Paraíba. The analysis was performed using the BioNumerics software v7.6.

    Journal: Journal of Fungi

    Article Title: Analyses of the Genetic Diversity and Population Structures of Sporothrix spp. Clinical Isolates from Paraíba, Brazil

    doi: 10.3390/jof10120848

    Figure Lengend Snippet: Principal component analysis (PCA) and multidimensional scaling (MDS). ( A , B ) In the #3 EcoRI-GA/MseI-TT combination and ( C , D ) In the #5 EcoRI-GA/MseI-AG combination The dataset consists of 46 isolates of S. brasiliensis (38 clinical isolates from Paraíba and eight reference strains), six of S. schenckii (reference strains), six of S. globosa (reference strains). The isolates were plotted in three-dimensional space and coloured according to genetic groups. The dotted lines represent the cluster profile obtained by the AFLP method of S. brasiliensis isolates from Paraíba. The analysis was performed using the BioNumerics software v7.6.

    Article Snippet: Fragment analysis was performed using the BioNumerics software. v.7.6 (Applied Maths, Sint-Martens-Latem, Belgium).

    Techniques: Software

    Distribution of Sporothrix spp. Genotypes generated by AFLP using a Self-Organizing Map (SOM). Kohonen maps using characters. ( A ) In the #3 EcoRI-GA/MseI-TT combination and ( B ) In the #5 EcoRI-GA/MseI-AG combination A total of 46 S. brasiliensis isolates (38 clinical isolates from Paraíba and eight reference strains), six of S. schenckii (reference strains) and six of S. globosa (reference strains) were included in this study. The dimensioning analyses were performed using BioNumerics v7.6 to assess the consistency of the differentiation of the populations defined by the cluster analysis. The distance between black blocks can be inferred by observing the thickness and brightness of the lines (white, grey) connecting them. The thicker and lighter the line, the greater the distance between the samples in the black blocks and their neighbouring blocks. Isolates were assigned specific colours corresponding to their genetic groups.

    Journal: Journal of Fungi

    Article Title: Analyses of the Genetic Diversity and Population Structures of Sporothrix spp. Clinical Isolates from Paraíba, Brazil

    doi: 10.3390/jof10120848

    Figure Lengend Snippet: Distribution of Sporothrix spp. Genotypes generated by AFLP using a Self-Organizing Map (SOM). Kohonen maps using characters. ( A ) In the #3 EcoRI-GA/MseI-TT combination and ( B ) In the #5 EcoRI-GA/MseI-AG combination A total of 46 S. brasiliensis isolates (38 clinical isolates from Paraíba and eight reference strains), six of S. schenckii (reference strains) and six of S. globosa (reference strains) were included in this study. The dimensioning analyses were performed using BioNumerics v7.6 to assess the consistency of the differentiation of the populations defined by the cluster analysis. The distance between black blocks can be inferred by observing the thickness and brightness of the lines (white, grey) connecting them. The thicker and lighter the line, the greater the distance between the samples in the black blocks and their neighbouring blocks. Isolates were assigned specific colours corresponding to their genetic groups.

    Article Snippet: Fragment analysis was performed using the BioNumerics software. v.7.6 (Applied Maths, Sint-Martens-Latem, Belgium).

    Techniques: Generated