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Ciphergen inc biomarker pattern software (bps
Data mining of the set of multidrug-resistant tuberculosis serum proteins <t>biomarker</t> candidates. (A) Biological process; (B) Cellular component; (C) Molecular function; (D) KEGG pathway mapping; (E) The network of proteins analyzed by String software.
Biomarker Pattern Software (Bps, supplied by Ciphergen inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/biomarker+patterns+software+(bps/biomarker+pattern+software/pmc04737680-131-5-9
Average 90 stars, based on 1 article reviews
biomarker pattern software (bps - by Bioz Stars, 2026-11
90/100 stars

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1) Product Images from "A Group of Novel Serum Diagnostic Biomarkers for Multidrug-Resistant Tuberculosis by iTRAQ-2D LC-MS/MS and Solexa Sequencing"

Article Title: A Group of Novel Serum Diagnostic Biomarkers for Multidrug-Resistant Tuberculosis by iTRAQ-2D LC-MS/MS and Solexa Sequencing

Journal: International Journal of Biological Sciences

doi: 10.7150/ijbs.13805

Data mining of the set of multidrug-resistant tuberculosis serum proteins biomarker candidates. (A) Biological process; (B) Cellular component; (C) Molecular function; (D) KEGG pathway mapping; (E) The network of proteins analyzed by String software.
Figure Legend Snippet: Data mining of the set of multidrug-resistant tuberculosis serum proteins biomarker candidates. (A) Biological process; (B) Cellular component; (C) Molecular function; (D) KEGG pathway mapping; (E) The network of proteins analyzed by String software.

Techniques Used: Biomarker Assay, Software

Data mining of the set of multidrug-resistant tuberculosis serum miRNAs biomarker candidates. MDR-TB: multidrug-resistant tuberculosis; DS-TB: drug-sensitive tuberculosis. (A) GO analysis; (B) KEGG analysis; (C) cluster analysis.
Figure Legend Snippet: Data mining of the set of multidrug-resistant tuberculosis serum miRNAs biomarker candidates. MDR-TB: multidrug-resistant tuberculosis; DS-TB: drug-sensitive tuberculosis. (A) GO analysis; (B) KEGG analysis; (C) cluster analysis.

Techniques Used: Biomarker Assay

Decision trees in the diagnostic model for the multidrug-resistant tuberculosis by the Biomarker Patterns Software. The diagnostic model shows the tree structure and sample distribution of the set. MDR-TB: multidrug-resistant tuberculosis; DS-TB: drug-sensitive tuberculosis. (A) diagnostic model for MDR-TB patients and healthy controls; (B) diagnostic model for MDR-TB patients and DS-TB patients.
Figure Legend Snippet: Decision trees in the diagnostic model for the multidrug-resistant tuberculosis by the Biomarker Patterns Software. The diagnostic model shows the tree structure and sample distribution of the set. MDR-TB: multidrug-resistant tuberculosis; DS-TB: drug-sensitive tuberculosis. (A) diagnostic model for MDR-TB patients and healthy controls; (B) diagnostic model for MDR-TB patients and DS-TB patients.

Techniques Used: Diagnostic Assay, Biomarker Assay, Software

Related Articles

Construct:

Article Title: Methods and compositions for diagnosing and treating cancer
Article Snippet: Any available comparison software can be used, including but not limited to, the Ciphergen Express (CE) and Biomarker Patterns Software (BPS) package (available from Ciphergen Biosystems, Inc., Freemont, Calif.).

Article Title: Assays and methods for selecting a treatment regimen for a subject with depression
Article Snippet: Any available comparison software can be used, including but not limited to, the Ciphergen Express (CE) and Biomarker Patterns Software (BPS) package (available from Ciphergen Biosystems, Inc., Freemont, Calif.).

Article Title: Methods, kits, and systems for multiplexed detection of target molecules and uses thereof
Article Snippet: Any available comparison software can be used, including but not limited to, the Ciphergen Express (CE) and Biomarker Patterns Software (BPS) package (available from Ciphergen Biosystems, Inc., Freemont, Calif.).

Article Title: Predictive marker for topoisomerase I inhibitors
Article Snippet: Any available comparison software can be used, including but not limited to, the Ciphergen Express (CE) and Biomarker Patterns Software (BPS) package, Ciphergen Biosystems, Inc., CA, USA.

Article Title: Establishment of a novel diagnostic model for Sjögren's syndrome by proteomic fingerprinting.
Article Snippet: Primary Sjögren’s syndrome (pSS) is a systemic autoimmune disease that lacks sensitive and specific diagnostic methods.. The aim of this study was to identify potential biomarkers specific for pSS and to establish a diagnostic model. Serum samples from patients with pSS, disease controls (DC, patients with systemic lupus erythematosus (SLE), rheumatoid arthritis (RA)), and healthy controls (HC)) were randomly divided into a training set (35 pSS, 50 DC, and 26 HC) and a testing set (25 pSS, 50 DC, and 25 HC).. Weak cationic exchange (WCX) magnetic beads were used to differentially capture serum proteins prior to proteomic analysis.

Article Title: Method for treating kidney disease with a SLIT2-binding extracellular domain of ROBO2
Article Snippet: Any available comparison software can be used, including but not limited to, the Ciphergen Express (CE) and Biomarker Patterns Software (BPS) package, Ciphergen Biosystems, Inc., CA, USA.

Article Title: Screening of serum protein biomarkers in hemorrhagic cerebral infarction by surface-enhanced laser desorption/ionization time-of-flight mass spectrometry (SELDI-TOF-MS) technology
Article Snippet: A decision tree classification algorithm was constructed by using Biomarker Patterns 5.0 software (BPS, Ciphergen Biosystems).

Article Title: Polymorphism of thrombospondin-1 as a biomarker for susceptibility to dry eye
Article Snippet: Any available comparison software can be used, including but not limited to, the Ciphergen Express (CE) and Biomarker Patterns Software (BPS) package (available from Ciphergen Biosystems, Inc., Freemont, Calif.).

Biomarker Assay:

Article Title: Methods and compositions for diagnosing and treating cancer
Article Snippet: Any available comparison software can be used, including but not limited to, the Ciphergen Express (CE) and Biomarker Patterns Software (BPS) package (available from Ciphergen Biosystems, Inc., Freemont, Calif.).

Article Title: Assays and methods for selecting a treatment regimen for a subject with depression
Article Snippet: Any available comparison software can be used, including but not limited to, the Ciphergen Express (CE) and Biomarker Patterns Software (BPS) package (available from Ciphergen Biosystems, Inc., Freemont, Calif.).

Article Title: Methods, kits, and systems for multiplexed detection of target molecules and uses thereof
Article Snippet: Any available comparison software can be used, including but not limited to, the Ciphergen Express (CE) and Biomarker Patterns Software (BPS) package (available from Ciphergen Biosystems, Inc., Freemont, Calif.).

Article Title: Predictive marker for topoisomerase I inhibitors
Article Snippet: Any available comparison software can be used, including but not limited to, the Ciphergen Express (CE) and Biomarker Patterns Software (BPS) package, Ciphergen Biosystems, Inc., CA, USA.

Article Title: Establishment of a novel diagnostic model for Sjögren's syndrome by proteomic fingerprinting.
Article Snippet: Primary Sjögren’s syndrome (pSS) is a systemic autoimmune disease that lacks sensitive and specific diagnostic methods.. The aim of this study was to identify potential biomarkers specific for pSS and to establish a diagnostic model. Serum samples from patients with pSS, disease controls (DC, patients with systemic lupus erythematosus (SLE), rheumatoid arthritis (RA)), and healthy controls (HC)) were randomly divided into a training set (35 pSS, 50 DC, and 26 HC) and a testing set (25 pSS, 50 DC, and 25 HC).. Weak cationic exchange (WCX) magnetic beads were used to differentially capture serum proteins prior to proteomic analysis.

Article Title: Method for treating kidney disease with a SLIT2-binding extracellular domain of ROBO2
Article Snippet: Any available comparison software can be used, including but not limited to, the Ciphergen Express (CE) and Biomarker Patterns Software (BPS) package, Ciphergen Biosystems, Inc., CA, USA.

Article Title: Screening of serum protein biomarkers in hemorrhagic cerebral infarction by surface-enhanced laser desorption/ionization time-of-flight mass spectrometry (SELDI-TOF-MS) technology
Article Snippet: A decision tree classification algorithm was constructed by using Biomarker Patterns 5.0 software (BPS, Ciphergen Biosystems).

Article Title: Polymorphism of thrombospondin-1 as a biomarker for susceptibility to dry eye
Article Snippet: Any available comparison software can be used, including but not limited to, the Ciphergen Express (CE) and Biomarker Patterns Software (BPS) package (available from Ciphergen Biosystems, Inc., Freemont, Calif.).

Software:

Article Title: Methods and compositions for diagnosing and treating cancer
Article Snippet: Any available comparison software can be used, including but not limited to, the Ciphergen Express (CE) and Biomarker Patterns Software (BPS) package (available from Ciphergen Biosystems, Inc., Freemont, Calif.).

Article Title: Assays and methods for selecting a treatment regimen for a subject with depression
Article Snippet: Any available comparison software can be used, including but not limited to, the Ciphergen Express (CE) and Biomarker Patterns Software (BPS) package (available from Ciphergen Biosystems, Inc., Freemont, Calif.).

Article Title: Methods, kits, and systems for multiplexed detection of target molecules and uses thereof
Article Snippet: Any available comparison software can be used, including but not limited to, the Ciphergen Express (CE) and Biomarker Patterns Software (BPS) package (available from Ciphergen Biosystems, Inc., Freemont, Calif.).

Article Title: Predictive marker for topoisomerase I inhibitors
Article Snippet: Any available comparison software can be used, including but not limited to, the Ciphergen Express (CE) and Biomarker Patterns Software (BPS) package, Ciphergen Biosystems, Inc., CA, USA.

Article Title: Establishment of a novel diagnostic model for Sjögren's syndrome by proteomic fingerprinting.
Article Snippet: Primary Sjögren’s syndrome (pSS) is a systemic autoimmune disease that lacks sensitive and specific diagnostic methods.. The aim of this study was to identify potential biomarkers specific for pSS and to establish a diagnostic model. Serum samples from patients with pSS, disease controls (DC, patients with systemic lupus erythematosus (SLE), rheumatoid arthritis (RA)), and healthy controls (HC)) were randomly divided into a training set (35 pSS, 50 DC, and 26 HC) and a testing set (25 pSS, 50 DC, and 25 HC).. Weak cationic exchange (WCX) magnetic beads were used to differentially capture serum proteins prior to proteomic analysis.

Article Title: Method for treating kidney disease with a SLIT2-binding extracellular domain of ROBO2
Article Snippet: Any available comparison software can be used, including but not limited to, the Ciphergen Express (CE) and Biomarker Patterns Software (BPS) package, Ciphergen Biosystems, Inc., CA, USA.

Article Title: Screening of serum protein biomarkers in hemorrhagic cerebral infarction by surface-enhanced laser desorption/ionization time-of-flight mass spectrometry (SELDI-TOF-MS) technology
Article Snippet: A decision tree classification algorithm was constructed by using Biomarker Patterns 5.0 software (BPS, Ciphergen Biosystems).

Article Title: Polymorphism of thrombospondin-1 as a biomarker for susceptibility to dry eye
Article Snippet: Any available comparison software can be used, including but not limited to, the Ciphergen Express (CE) and Biomarker Patterns Software (BPS) package (available from Ciphergen Biosystems, Inc., Freemont, Calif.).

Comparison:

Article Title: Methods and compositions for diagnosing and treating cancer
Article Snippet: Any available comparison software can be used, including but not limited to, the Ciphergen Express (CE) and Biomarker Patterns Software (BPS) package (available from Ciphergen Biosystems, Inc., Freemont, Calif.).

Article Title: Assays and methods for selecting a treatment regimen for a subject with depression
Article Snippet: Any available comparison software can be used, including but not limited to, the Ciphergen Express (CE) and Biomarker Patterns Software (BPS) package (available from Ciphergen Biosystems, Inc., Freemont, Calif.).

Article Title: Methods, kits, and systems for multiplexed detection of target molecules and uses thereof
Article Snippet: Any available comparison software can be used, including but not limited to, the Ciphergen Express (CE) and Biomarker Patterns Software (BPS) package (available from Ciphergen Biosystems, Inc., Freemont, Calif.).

Article Title: Predictive marker for topoisomerase I inhibitors
Article Snippet: Any available comparison software can be used, including but not limited to, the Ciphergen Express (CE) and Biomarker Patterns Software (BPS) package, Ciphergen Biosystems, Inc., CA, USA.

Article Title: Establishment of a novel diagnostic model for Sjögren's syndrome by proteomic fingerprinting.
Article Snippet: Primary Sjögren’s syndrome (pSS) is a systemic autoimmune disease that lacks sensitive and specific diagnostic methods.. The aim of this study was to identify potential biomarkers specific for pSS and to establish a diagnostic model. Serum samples from patients with pSS, disease controls (DC, patients with systemic lupus erythematosus (SLE), rheumatoid arthritis (RA)), and healthy controls (HC)) were randomly divided into a training set (35 pSS, 50 DC, and 26 HC) and a testing set (25 pSS, 50 DC, and 25 HC).. Weak cationic exchange (WCX) magnetic beads were used to differentially capture serum proteins prior to proteomic analysis.

Article Title: Method for treating kidney disease with a SLIT2-binding extracellular domain of ROBO2
Article Snippet: Any available comparison software can be used, including but not limited to, the Ciphergen Express (CE) and Biomarker Patterns Software (BPS) package, Ciphergen Biosystems, Inc., CA, USA.

Article Title: Screening of serum protein biomarkers in hemorrhagic cerebral infarction by surface-enhanced laser desorption/ionization time-of-flight mass spectrometry (SELDI-TOF-MS) technology
Article Snippet: A decision tree classification algorithm was constructed by using Biomarker Patterns 5.0 software (BPS, Ciphergen Biosystems).

Article Title: Polymorphism of thrombospondin-1 as a biomarker for susceptibility to dry eye
Article Snippet: Any available comparison software can be used, including but not limited to, the Ciphergen Express (CE) and Biomarker Patterns Software (BPS) package (available from Ciphergen Biosystems, Inc., Freemont, Calif.).



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Image Search Results


Data mining of the set of multidrug-resistant tuberculosis serum proteins biomarker candidates. (A) Biological process; (B) Cellular component; (C) Molecular function; (D) KEGG pathway mapping; (E) The network of proteins analyzed by String software.

Journal: International Journal of Biological Sciences

Article Title: A Group of Novel Serum Diagnostic Biomarkers for Multidrug-Resistant Tuberculosis by iTRAQ-2D LC-MS/MS and Solexa Sequencing

doi: 10.7150/ijbs.13805

Figure Lengend Snippet: Data mining of the set of multidrug-resistant tuberculosis serum proteins biomarker candidates. (A) Biological process; (B) Cellular component; (C) Molecular function; (D) KEGG pathway mapping; (E) The network of proteins analyzed by String software.

Article Snippet: Selected biomarkers were transferred to Biomarker Pattern Software (BPS, Ciphergen Biosystems) to construct the decision tree of MDR-TB .

Techniques: Biomarker Assay, Software

Data mining of the set of multidrug-resistant tuberculosis serum miRNAs biomarker candidates. MDR-TB: multidrug-resistant tuberculosis; DS-TB: drug-sensitive tuberculosis. (A) GO analysis; (B) KEGG analysis; (C) cluster analysis.

Journal: International Journal of Biological Sciences

Article Title: A Group of Novel Serum Diagnostic Biomarkers for Multidrug-Resistant Tuberculosis by iTRAQ-2D LC-MS/MS and Solexa Sequencing

doi: 10.7150/ijbs.13805

Figure Lengend Snippet: Data mining of the set of multidrug-resistant tuberculosis serum miRNAs biomarker candidates. MDR-TB: multidrug-resistant tuberculosis; DS-TB: drug-sensitive tuberculosis. (A) GO analysis; (B) KEGG analysis; (C) cluster analysis.

Article Snippet: Selected biomarkers were transferred to Biomarker Pattern Software (BPS, Ciphergen Biosystems) to construct the decision tree of MDR-TB .

Techniques: Biomarker Assay

Decision trees in the diagnostic model for the multidrug-resistant tuberculosis by the Biomarker Patterns Software. The diagnostic model shows the tree structure and sample distribution of the set. MDR-TB: multidrug-resistant tuberculosis; DS-TB: drug-sensitive tuberculosis. (A) diagnostic model for MDR-TB patients and healthy controls; (B) diagnostic model for MDR-TB patients and DS-TB patients.

Journal: International Journal of Biological Sciences

Article Title: A Group of Novel Serum Diagnostic Biomarkers for Multidrug-Resistant Tuberculosis by iTRAQ-2D LC-MS/MS and Solexa Sequencing

doi: 10.7150/ijbs.13805

Figure Lengend Snippet: Decision trees in the diagnostic model for the multidrug-resistant tuberculosis by the Biomarker Patterns Software. The diagnostic model shows the tree structure and sample distribution of the set. MDR-TB: multidrug-resistant tuberculosis; DS-TB: drug-sensitive tuberculosis. (A) diagnostic model for MDR-TB patients and healthy controls; (B) diagnostic model for MDR-TB patients and DS-TB patients.

Article Snippet: Selected biomarkers were transferred to Biomarker Pattern Software (BPS, Ciphergen Biosystems) to construct the decision tree of MDR-TB .

Techniques: Diagnostic Assay, Biomarker Assay, Software

Decision tree analysis models and expression profiles of potential biomarker peaks. Cluster-peaks implicated in the tree-analysis model using the IMAC30 chip-type (panel A) or the CM10 chip-type (D) stratifying myosteatosis (black) and control (grey) were plotted according to their normalized intensity values (B, C and E, y-axis) for peak clusters of m/z 2540 (B), 4373 (C) and 2544 (E).

Journal: Biomedical Reports

Article Title: Proteomic identification of potential markers of myosteatosis in human urine

doi: 10.3892/br.2018.1091

Figure Lengend Snippet: Decision tree analysis models and expression profiles of potential biomarker peaks. Cluster-peaks implicated in the tree-analysis model using the IMAC30 chip-type (panel A) or the CM10 chip-type (D) stratifying myosteatosis (black) and control (grey) were plotted according to their normalized intensity values (B, C and E, y-axis) for peak clusters of m/z 2540 (B), 4373 (C) and 2544 (E).

Article Snippet: Model building and validation Clustered peak lists were analysed with the Biomarker Pattern software (BPS; Bio-Rad).

Techniques: Expressing, Biomarker Assay

Expression profiles of potential  biomarker  peaks identified in cluster and decision tree-analysis models.

Journal: Biomedical Reports

Article Title: Proteomic identification of potential markers of myosteatosis in human urine

doi: 10.3892/br.2018.1091

Figure Lengend Snippet: Expression profiles of potential biomarker peaks identified in cluster and decision tree-analysis models.

Article Snippet: Model building and validation Clustered peak lists were analysed with the Biomarker Pattern software (BPS; Bio-Rad).

Techniques: Expressing, Biomarker Assay