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bac array slide  (Illumina Inc)


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    Structured Review

    Illumina Inc bac array slide
    Bac Array Slide, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/bac+array/bac+array+slide/pm39753942-53-9-12
    Average 90 stars, based on 1 article reviews
    bac array slide - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    BAC Assay:

    Article Title: Frequency of submicroscopic chromosomal aberrations in pregnancies without increased risk for structural chromosomal aberrations: systematic review and meta-analysis.
    Article Snippet: 71% of the cohort) and Affymetrix Genome-Wide Human SNP Array 6.0, containing 1.8 million oligonucleotide probes 1966 92 (25 SL) 0 0 4 Shaffer et al. 2012 BAC-based and oligo-based aCGH platforms: SignatureChipWG V1.0, SignatureChipOS V1.0 2, SignatureChip V4.0 or Signature PrenatalChip V1.0 or V2.0 346 1 95 0 5 Breman et al. 2012 BCM Clinical BAC arrays: BAC V4, V5, V6, OLIGO V6, V7, V8 394 52 0 0 6 Fiorentino et al 2013 BAC array - CytoChip Focus Constitutional (BlueGnome, UK) 1Mb resolution across the genome and 100 kb resolution in 139 significant regions 1118 3 (3 SL) 1675 10 (1 SL) 7 Scott et al. 2013 Agilent ISCA 8×60K array (Agilent, Santa Clara, CA, USA), Agilent ISCA 8×60k design (SUFWprenatal Array), 70 kb resolution backbone with increased probe coverage in targeted regions, CNVs < 400 kb were investigated only if relevant to the referral indication, or in a region of interest targeted by the prenatal array design. .. 393 2 (1 SL) 29 0 8 Konialis et al 2015 BAC array - CytoChip Focus Constitutional (BlueGnome, UK), 1 Mb resolution backbone and a targeted 100 Kb resolution in 139 significant regions 2107 7 (4 SL) Included in AMA category - 9 Papoulidis et al 2015 BAC array – CytoChip Focus Constitutional (BlueGnome, UK) 1- Mb backbone resolution and ~100- kb resolution in 143 significant regions 592 2 (2 SL) 128 0 10 Van Opstal SNP array (Illumina 624 5 0 0 This article is protected by copyright. ..

    Article Title: Aneuploidy-driven gene expression profiling in human blastocysts: insights from RNA-Seq analysis.
    Article Snippet: Purpose Preimplantation aneuploidy in humans is one of the primary causes of implantation failure and embryo miscarriage.. This study was conducted to gain insight into gene expression changes that may result from aneuploidy in blastocysts through RNA-Seq analysis.. Methods The surplus embryos of preimplantation genetic testing for aneuploidy (PGT-A) candidate couples with normal karyotype and maternal age < 38 were collected following identical ovarian stimulation protocol.

    Article Title: The Dark Matter of Large Cereal Genomes: Long Tandem Repeats
    Article Snippet: The ONT read also confirmed the presence of the adjacent ~6-kb cluster consisting of TaeCsTr99 fragments, which was less obvious here than in the Illumina BAC assembly due to the inherent inaccuracy of the nanopore technology ( C,D). .. Except for the variation in the number of units, the overall structure of the distal array looked highly similar in the BAC Illumina assembly and the ONT read. ..

    Article Title: Genetic Counseling and Management: The First Study to Report NIPT Findings in a Romanian Population
    Article Snippet: .. Array CGH was performed using Cyto Chip Focus Constitutional BAC array (Illumina Inc., San Diego, CA, USA), and the used reference was the normal human male genomic DNA (Promega Corporation, Madison, WI, USA). ..

    Article Title: Whole Genome Amplification in Preimplantation Genetic Testing in the Era of Massively Parallel Sequencing
    Article Snippet: .. PGT performed on trophectoderm biopsies using PicoPLEX in combination with BlueGnome’s BAC arrays (later Illumina, now discontinued) and subsequently MPS began a major revolution in the availability of human PGT and forever changed the face of clinical in vitro fertilization [ , , ]. ..

    Article Title: De novo 8p21.3→ p23.3 Duplication With t(4;8)(q35;p21.3) Translocation Associated With Mental Retardation, Autism Spectrum Disorder, and Congenital Heart Defects: Case Report With Literature Review
    Article Snippet: .. Array Comparative Genomic Hybridization (aCGH) analysis was performed using CytoChip Focus Constitutional BAC array (Illumina Inc., U.S.) and the used reference was the normal human male genomic DNA (Promega, WI). ..

    other:

    Article Title: Analysis of the copy number profiles of several tumor samples from the same patient reveals the successive steps in tumorigenesis
    Article Snippet: The tumors from three patients (P1 to P3) were analyzed with BAC arrays (2,385 probes), and the tumors from two patients (P4 and P5) were analyzed with Illumina SNP arrays (373,397 probes).

    Article Title: Correlation between prognostic chromosomal segregation and detected rearrangements in preimplantation embryos in a balanced translocation carrier
    Article Snippet: 1 Office for Technology Transfer in the area of Molecular Genetics and Diagnostics(OTTMGD), Medical Centre “ReproBioMed“ Ltd., Sofia, Bulgaria 2 Department of Assisted Reproduction, Medical Centre “ReproBioMed“ Ltd., Sofia, Bulgaria 3 Department of Assisted Reproduction, Medical Centre “Adella Fertility“ JSC., Sofia, Bulgaria Introduction: Individuals with balanced translocations are estimated to be around 1 % of the patients with infertility.. A reciprocal translocation usually involves breakage of two non-homologous chromosomes with exchange of fragment with different size.. The medical history of affected couples includes abortions, stillbirth, congenital anomalies, possible mental retardation and unsuccessful IVF attempts.

    Amplification:

    Article Title: Aneuploidy-driven gene expression profiling in human blastocysts: insights from RNA-Seq analysis.
    Article Snippet: Purpose Preimplantation aneuploidy in humans is one of the primary causes of implantation failure and embryo miscarriage.. This study was conducted to gain insight into gene expression changes that may result from aneuploidy in blastocysts through RNA-Seq analysis.. Methods The surplus embryos of preimplantation genetic testing for aneuploidy (PGT-A) candidate couples with normal karyotype and maternal age < 38 were collected following identical ovarian stimulation protocol.

    Labeling:

    Article Title: Aneuploidy-driven gene expression profiling in human blastocysts: insights from RNA-Seq analysis.
    Article Snippet: Purpose Preimplantation aneuploidy in humans is one of the primary causes of implantation failure and embryo miscarriage.. This study was conducted to gain insight into gene expression changes that may result from aneuploidy in blastocysts through RNA-Seq analysis.. Methods The surplus embryos of preimplantation genetic testing for aneuploidy (PGT-A) candidate couples with normal karyotype and maternal age < 38 were collected following identical ovarian stimulation protocol.

    In Vitro:

    Article Title: Whole Genome Amplification in Preimplantation Genetic Testing in the Era of Massively Parallel Sequencing
    Article Snippet: .. PGT performed on trophectoderm biopsies using PicoPLEX in combination with BlueGnome’s BAC arrays (later Illumina, now discontinued) and subsequently MPS began a major revolution in the availability of human PGT and forever changed the face of clinical in vitro fertilization [ , , ]. ..

    Hybridization:

    Article Title: De novo 8p21.3→ p23.3 Duplication With t(4;8)(q35;p21.3) Translocation Associated With Mental Retardation, Autism Spectrum Disorder, and Congenital Heart Defects: Case Report With Literature Review
    Article Snippet: .. Array Comparative Genomic Hybridization (aCGH) analysis was performed using CytoChip Focus Constitutional BAC array (Illumina Inc., U.S.) and the used reference was the normal human male genomic DNA (Promega, WI). ..



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    Image Search Results


    CGH using the chromosome 7 (Ch7) BAC tile-path array, Agilent 244A oligonucleotide array platform and chromosome 7 gene resolution oligonucleotide array maps the MDR to a 2.8 Mb region at 7q32 (Panel A). As shown by Affymetrix gene expression analyses, the genes on 7q, particularly those within the MDR are significantly under-expressed in SMZL with 7q deletion than those without the deletion. Panel B shows the genes significantly differentially expressed between SMZL with and without 7q deletion according to P values, while Panel C displays those with further fold change more than 1.25×SD (standard deviation).

    Journal: PLoS ONE

    Article Title: An Integrated Genomic and Expression Analysis of 7q Deletion in Splenic Marginal Zone Lymphoma

    doi: 10.1371/journal.pone.0044997

    Figure Lengend Snippet: CGH using the chromosome 7 (Ch7) BAC tile-path array, Agilent 244A oligonucleotide array platform and chromosome 7 gene resolution oligonucleotide array maps the MDR to a 2.8 Mb region at 7q32 (Panel A). As shown by Affymetrix gene expression analyses, the genes on 7q, particularly those within the MDR are significantly under-expressed in SMZL with 7q deletion than those without the deletion. Panel B shows the genes significantly differentially expressed between SMZL with and without 7q deletion according to P values, while Panel C displays those with further fold change more than 1.25×SD (standard deviation).

    Article Snippet: summarised the 7q deletion in SMZL detected by CGH using a chromosome-7 BAC tile-path array (17 cases) and the Agilent aCGH 244A array CGH (10 cases) from our previous studies , .

    Techniques: Expressing, Standard Deviation

    Clinical cycle of comprehensive preimplantation genetic testing. The process starts with family genetic testing in order to establish normal and disease-associated family haplotypes. Next, oocyte stimulation, retrieval, and fertilization are performed. Embryos surviving until day 5 undergo laser-assisted hatching and biopsy. Biopsy material consisting of a few trophectoderm cells is amplified using one of the WGA techniques. WGA material is further used to assess the embryonic genome, including haplotype, causative variant, aneuploidy, and CNV analyses. The disease-free embryo is subjected to embryo transfer to the uterine cavity. The whole cycle can be repeated within 24 h, with a day-6 embryo being transferred. If the genetic testing takes longer, then embryos are vitrified and thawed before being transferred. PGT—preimplantation genetic testing, WGA—whole-genome amplification, IVF—in vitro fertilization, MPS—massively parallel sequencing, CNV—copy number variation.

    Journal: International Journal of Molecular Sciences

    Article Title: Whole Genome Amplification in Preimplantation Genetic Testing in the Era of Massively Parallel Sequencing

    doi: 10.3390/ijms23094819

    Figure Lengend Snippet: Clinical cycle of comprehensive preimplantation genetic testing. The process starts with family genetic testing in order to establish normal and disease-associated family haplotypes. Next, oocyte stimulation, retrieval, and fertilization are performed. Embryos surviving until day 5 undergo laser-assisted hatching and biopsy. Biopsy material consisting of a few trophectoderm cells is amplified using one of the WGA techniques. WGA material is further used to assess the embryonic genome, including haplotype, causative variant, aneuploidy, and CNV analyses. The disease-free embryo is subjected to embryo transfer to the uterine cavity. The whole cycle can be repeated within 24 h, with a day-6 embryo being transferred. If the genetic testing takes longer, then embryos are vitrified and thawed before being transferred. PGT—preimplantation genetic testing, WGA—whole-genome amplification, IVF—in vitro fertilization, MPS—massively parallel sequencing, CNV—copy number variation.

    Article Snippet: PGT performed on trophectoderm biopsies using PicoPLEX in combination with BlueGnome’s BAC arrays (later Illumina, now discontinued) and subsequently MPS began a major revolution in the availability of human PGT and forever changed the face of clinical in vitro fertilization [ , , ].

    Techniques: Amplification, Variant Assay, Whole Genome Amplification, In Vitro, Sequencing