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Pyrosequencing Inc allele quantification software
Allele Quantification Software, supplied by Pyrosequencing Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/allele+quantification+software/allele+quantification+software/pmc04294550-49-20-23
Average 90 stars, based on 1 article reviews
allele quantification software - by Bioz Stars, 2026-09
90/100 stars

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Related Articles

Expressing:

Article Title: A FUNCTIONAL HAPLOTYPE IN EIF2AK3 , AN ER STRESS SENSOR, IS ASSOCIATED WITH LOWER BONE MINERAL DENSITY
Article Snippet: .. Allelic expression of rs13045 in cDNA or genomic DNA was measured using Pyrosequencing (sequencing primer: CATGCTTTCACGGTCT ) and quantified using Allele Quantification software (Pyrosequencing, Inc., Uppsala, Sweden) according to the manufacturer's methods. ..

Article Title: Molecular screening and association analyses of the interleukin 6 receptor gene variants with type 2 diabetes, diabetic nephropathy, and insulin sensitivity.
Article Snippet: .. Allelespecific expression was tested by comparing the major allele frequency estimated from Allele Quantification software (Pyrosequencing, Inc.) in the cDNA from transformed lymphocytes to that in at least 97 DNA samples from heterozygous individuals using a Mann-Whitney U test. ..

Sequencing:

Article Title: A FUNCTIONAL HAPLOTYPE IN EIF2AK3 , AN ER STRESS SENSOR, IS ASSOCIATED WITH LOWER BONE MINERAL DENSITY
Article Snippet: .. Allelic expression of rs13045 in cDNA or genomic DNA was measured using Pyrosequencing (sequencing primer: CATGCTTTCACGGTCT ) and quantified using Allele Quantification software (Pyrosequencing, Inc., Uppsala, Sweden) according to the manufacturer's methods. ..

Software:

Article Title: A FUNCTIONAL HAPLOTYPE IN EIF2AK3 , AN ER STRESS SENSOR, IS ASSOCIATED WITH LOWER BONE MINERAL DENSITY
Article Snippet: .. Allelic expression of rs13045 in cDNA or genomic DNA was measured using Pyrosequencing (sequencing primer: CATGCTTTCACGGTCT ) and quantified using Allele Quantification software (Pyrosequencing, Inc., Uppsala, Sweden) according to the manufacturer's methods. ..

Article Title: Adiponectin receptor 1 gene (ADIPOR1) as a candidate for type 2 diabetes and insulin resistance.
Article Snippet: SNPs were typed by Pyrosequencing (PSQ96; Pyrosequencing, Uppsala, Sweden) using the manufacturer’s protocols, except that a universal sequence was appended to one sequence-specific primer and amplification was performed in the presence of the universal biotinylated primer. .. Typing of pooled DNA samples was performed by Pyrosequencing using Allele Quantification software (Pyrosequencing) as described by others (16,17). ..

Article Title: Molecular screening and association analyses of the interleukin 6 receptor gene variants with type 2 diabetes, diabetic nephropathy, and insulin sensitivity.
Article Snippet: .. Allelespecific expression was tested by comparing the major allele frequency estimated from Allele Quantification software (Pyrosequencing, Inc.) in the cDNA from transformed lymphocytes to that in at least 97 DNA samples from heterozygous individuals using a Mann-Whitney U test. ..

Article Title: Common variants in glutamine:fructose-6-phosphate amidotransferase 2 (GFPT2) gene are associated with type 2 diabetes, diabetic nephropathy, and increased GFPT2 mRNA levels.
Article Snippet: .. The ratio between the alleles was quantified using Allele Quantification software and Pyrosequencing (Pyrosequencing, Inc). ..

Article Title: DNA methylotype analysis in colorectal cancer
Article Snippet: .. The Pyrosequencing reaction Pyrosequencing was performed as previously described ( 11 ) using the Pyrosequencing ® PSQ HS96A instrument and allele quantification software (Pyrosequencing, Uppsala, Sweden). .. The Pyrosequencing reaction contained 5'-biotinylated single-strand PCR fragments (purified from 10 μl of the second-round PCR products) and 2.4 pmole Pyrosequencing primers, followed by the sequential addition of enzymes, substrate and dNTPs.

Article Title: Molecular screening and association analyses of the interleukin 6 receptor gene variants with type 2 diabetes, diabetic nephropathy, and insulin sensitivity.
Article Snippet: SNP2 (rs4845617) could not be assayed accurately using pyrosequencing and was typed using an oligonucleotide ligation assay as described previously (23). .. In African-Americans, noncoding and synonymous SNPs were typed initially in pools using Pyrosequencing and Allele Quantification software (Pyrosequencing, Inc.). ..

Article Title: DNA methylotype analysis in colorectal cancer
Article Snippet: .. Pyrosequencing was performed as previously described ( 11 ) using the Pyrosequencing ® PSQ HS96A instrument and allele quantification software (Pyrosequencing, Uppsala, Sweden). .. The Pyrosequencing reaction contained 5'-biotinylated single-strand PCR fragments (purified from 10 μl of the second-round PCR products) and 2.4 pmole Pyrosequencing primers, followed by the sequential addition of enzymes, substrate and dNTPs.

Transformation Assay:

Article Title: Molecular screening and association analyses of the interleukin 6 receptor gene variants with type 2 diabetes, diabetic nephropathy, and insulin sensitivity.
Article Snippet: .. Allelespecific expression was tested by comparing the major allele frequency estimated from Allele Quantification software (Pyrosequencing, Inc.) in the cDNA from transformed lymphocytes to that in at least 97 DNA samples from heterozygous individuals using a Mann-Whitney U test. ..

Mann-Whitney U-Test:

Article Title: Molecular screening and association analyses of the interleukin 6 receptor gene variants with type 2 diabetes, diabetic nephropathy, and insulin sensitivity.
Article Snippet: .. Allelespecific expression was tested by comparing the major allele frequency estimated from Allele Quantification software (Pyrosequencing, Inc.) in the cDNA from transformed lymphocytes to that in at least 97 DNA samples from heterozygous individuals using a Mann-Whitney U test. ..

other:

Article Title: Quantification of single nucleotide polymorphisms by automated DNA sequencing.
Article Snippet: Single nucleotide polymorphisms (SNPs) are linked to phenotypes associated with diseases and drug responses.. Many techniques are now available to identify and quantify such SNPs in DNA or RNA pools, although the information on the latter is limited.. The majority of these methodologies require prior knowledge of target sequences, normally obtained through DNA sequencing.



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Representation of the two sequence targets in the exon III of the OXTR gene. Legend: Representation of OXTR gene with the CpG island in green and the location of exon III in blue . The dashed lines show the amplification of the region analyzed that contains two targets, OXTR1 OXTR2. The target sequences are in the exon III of OXTR gene ( OXTR1 —cat. PM00016821 and OXTR2 —cat. PM00016828, QIAGEN), using the <t>PyroMark</t> PCR Kit (QIAGEN). Both regions are in the CpG island the comprise exons I–III. The OXTR1 target sequence has 34 pb with 4 CpG sites analyzed and the OXTR2 target sequence has 34 bp with 5 CpG sites analyzed
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Representation of the two sequence targets in the exon III of the OXTR gene. Legend: Representation of OXTR gene with the CpG island in green and the location of exon III in blue . The dashed lines show the amplification of the region analyzed that contains two targets, OXTR1 OXTR2. The target sequences are in the exon III of OXTR gene ( OXTR1 —cat. PM00016821 and OXTR2 —cat. PM00016828, QIAGEN), using the <t>PyroMark</t> PCR Kit (QIAGEN). Both regions are in the CpG island the comprise exons I–III. The OXTR1 target sequence has 34 pb with 4 CpG sites analyzed and the OXTR2 target sequence has 34 bp with 5 CpG sites analyzed
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Representation of the two sequence targets in the exon III of the OXTR gene. Legend: Representation of OXTR gene with the CpG island in green and the location of exon III in blue . The dashed lines show the amplification of the region analyzed that contains two targets, OXTR1 OXTR2. The target sequences are in the exon III of OXTR gene ( OXTR1 —cat. PM00016821 and OXTR2 —cat. PM00016828, QIAGEN), using the <t>PyroMark</t> PCR Kit (QIAGEN). Both regions are in the CpG island the comprise exons I–III. The OXTR1 target sequence has 34 pb with 4 CpG sites analyzed and the OXTR2 target sequence has 34 bp with 5 CpG sites analyzed
Allele Quantification Software, supplied by Pyrosequencing Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/allele+quantification+software/allele+quantification+software/pmc04294550-49-20-23
Average 90 stars, based on 1 article reviews
allele quantification software - by Bioz Stars, 2026-09
90/100 stars
  Buy from Supplier

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Representation of the two sequence targets in the exon III of the OXTR gene. Legend: Representation of OXTR gene with the CpG island in green and the location of exon III in blue . The dashed lines show the amplification of the region analyzed that contains two targets, OXTR1 OXTR2. The target sequences are in the exon III of OXTR gene ( OXTR1 —cat. PM00016821 and OXTR2 —cat. PM00016828, QIAGEN), using the <t>PyroMark</t> PCR Kit (QIAGEN). Both regions are in the CpG island the comprise exons I–III. The OXTR1 target sequence has 34 pb with 4 CpG sites analyzed and the OXTR2 target sequence has 34 bp with 5 CpG sites analyzed
The Pyromark Q24 Version 1.0.10 Software In The Allele Quantification (Aq) Analysis Mode, supplied by Qiagen, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Representation of the two sequence targets in the exon III of the OXTR gene. Legend: Representation of OXTR gene with the CpG island in green and the location of exon III in blue . The dashed lines show the amplification of the region analyzed that contains two targets, OXTR1 OXTR2. The target sequences are in the exon III of OXTR gene ( OXTR1 —cat. PM00016821 and OXTR2 —cat. PM00016828, QIAGEN), using the <t>PyroMark</t> PCR Kit (QIAGEN). Both regions are in the CpG island the comprise exons I–III. The OXTR1 target sequence has 34 pb with 4 CpG sites analyzed and the OXTR2 target sequence has 34 bp with 5 CpG sites analyzed
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aq (allele quantification) software module - by Bioz Stars, 2026-09
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Image Search Results


Representation of the two sequence targets in the exon III of the OXTR gene. Legend: Representation of OXTR gene with the CpG island in green and the location of exon III in blue . The dashed lines show the amplification of the region analyzed that contains two targets, OXTR1 OXTR2. The target sequences are in the exon III of OXTR gene ( OXTR1 —cat. PM00016821 and OXTR2 —cat. PM00016828, QIAGEN), using the PyroMark PCR Kit (QIAGEN). Both regions are in the CpG island the comprise exons I–III. The OXTR1 target sequence has 34 pb with 4 CpG sites analyzed and the OXTR2 target sequence has 34 bp with 5 CpG sites analyzed

Journal: BMC Neuroscience

Article Title: Epigenetic evidence for involvement of the oxytocin receptor gene in obsessive–compulsive disorder

doi: 10.1186/s12868-016-0313-4

Figure Lengend Snippet: Representation of the two sequence targets in the exon III of the OXTR gene. Legend: Representation of OXTR gene with the CpG island in green and the location of exon III in blue . The dashed lines show the amplification of the region analyzed that contains two targets, OXTR1 OXTR2. The target sequences are in the exon III of OXTR gene ( OXTR1 —cat. PM00016821 and OXTR2 —cat. PM00016828, QIAGEN), using the PyroMark PCR Kit (QIAGEN). Both regions are in the CpG island the comprise exons I–III. The OXTR1 target sequence has 34 pb with 4 CpG sites analyzed and the OXTR2 target sequence has 34 bp with 5 CpG sites analyzed

Article Snippet: We analyzed the data using PyroMark Q24 allele quantification software, version 2.0.6 (QIAGEN), which allowed us to calculate the proportional methylation.

Techniques: Sequencing, Amplification