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aav2 9 cag flex egfp wpre addgene  (Addgene inc)


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    Structured Review

    Addgene inc aav2 9 cag flex egfp wpre addgene
    Aav2 9 Cag Flex Egfp Wpre Addgene, supplied by Addgene inc, used in various techniques. Bioz Stars score: 94/100, based on 65 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/aav2+9/pAAV+hSyn+FLEx+mGFP-2A-Synaptophysin-mRuby+(Plasmid+%2371760)/pm41863797-674-173-175
    Average 94 stars, based on 65 article reviews
    aav2 9 cag flex egfp wpre addgene - by Bioz Stars, 2026-10
    94/100 stars

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    Related Articles

    Imaging:

    Article Title: VIP-expressing interneurons in the anterior insular cortex contribute to sensory processing to regulate adaptive behavior.
    Article Snippet: .. Deep-brain Ca2+ imaging VIP-ires-cre mice (N = 7) were unilaterally injected with 300 nL AAV2/9.CAG.flex.GCaMP6s (Addgene, #100842) into the aIC using a glass pipette (tip diameter 30 mm) connected to a Picospritzer III microinjection system (Parker Hannifin Corporation) at the following coordinates from bregma: anterior–posterior (AP): +1.95 mm; medio–lateral (ML): +2.85 mm; dorso–ventral (DV): 3.3 mm. .. Immediately after the AAV injection, a GRIN lens (0.63 7.3 mmGLP-0673, Inscopix) was lowered into the aIC as previously described using a custom-built lens holder, and fixed to the skull using ultraviolet light-curable glue (Loctite 4305, Henkel) and miniature screws (P.A.

    Article Title: VIP-expressing interneurons in the anterior insular cortex contribute to sensory processing to regulate adaptive behavior.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies VIP-rabbit Immunostar lot: 1744002; RRID:AB_572270 RFP-mouse Rockland lot: 37699; RRID:AB_2611063 GFP-goat Frontiers Institute lot: 2571574; RRID:AB_2571574 Bacterial and virus strains AAV2/1.syn.FLEX.splitTVA-EGFP-tTA Addgene #100798 AAV2/1.TREtight.mTagBFP2-B19G Addgene #100799 RV.EnvA.dG.mCherry In house production Batch 1 AAV2/5.CAG.flex.ArchT-GFP UNC vector core https://www.med.unc.edu/genetherapy/ vectorcore/ AAV2/5.CAG.flex.GFP UNC vector core https://www.med.unc.edu/genetherapy/ vectorcore/ AAV2/5.CamKIIa-hChR2(HI34R)-mCherry Addgene #26975 AAV2/9.CAG.flex.GCaMP6s Addgene #100842 Experimental models: Organisms/strains VIP-ires-cre mice Jackson Laboratory RRID:IMSR_JAX:010908 Ai9-tdTomato mice Jackson Laboratory RRID:IMSR_JAX:007909 Software and algorithms MATLAB MathWorks https://www.mathworks.com/products/ matlab Ca2+ imaging processing pipeline GitHub https://github.com/bahanonu/ calciumImagingAnalysis ANY-maze ANY-maze https://www.anymaze.co.uk GraphPad GraphPad Prism https://www.graphpad.com Python Python Software Foundation https://www.python.org Boris BORIS http://www.boris.unito.it/ Original code This Publication https://doi.org/10.5281/zenodo.6477827 ..

    Injection:

    Article Title: VIP-expressing interneurons in the anterior insular cortex contribute to sensory processing to regulate adaptive behavior.
    Article Snippet: .. Deep-brain Ca2+ imaging VIP-ires-cre mice (N = 7) were unilaterally injected with 300 nL AAV2/9.CAG.flex.GCaMP6s (Addgene, #100842) into the aIC using a glass pipette (tip diameter 30 mm) connected to a Picospritzer III microinjection system (Parker Hannifin Corporation) at the following coordinates from bregma: anterior–posterior (AP): +1.95 mm; medio–lateral (ML): +2.85 mm; dorso–ventral (DV): 3.3 mm. .. Immediately after the AAV injection, a GRIN lens (0.63 7.3 mmGLP-0673, Inscopix) was lowered into the aIC as previously described using a custom-built lens holder, and fixed to the skull using ultraviolet light-curable glue (Loctite 4305, Henkel) and miniature screws (P.A.

    Article Title: Post-Critical Period Transcriptional and Physiological Adaptations of Primary Sensory Cortex after Sensory Loss
    Article Snippet: Animals then received an IP injection of Antisedan (1mg/kg; Atipanezole, Zoetis) to 123 reverse the anesthesia. .. 124 125 Stereotaxic Surgery 126 At 3-4 weeks of age, mice were anesthetized with 1-3% isoflurane mixed with O2 and 127 unilaterally injected (left side) with 500nl of a virus encoding for channel rhodopsin (ChR2): 128 AAV2/9.hSynapsin.hChR2(H134R)-EYFP.WPRE.hGH (RRID: Addgene_26973, titre 2.1x1013). ..

    Transferring:

    Article Title: VIP-expressing interneurons in the anterior insular cortex contribute to sensory processing to regulate adaptive behavior.
    Article Snippet: .. Deep-brain Ca2+ imaging VIP-ires-cre mice (N = 7) were unilaterally injected with 300 nL AAV2/9.CAG.flex.GCaMP6s (Addgene, #100842) into the aIC using a glass pipette (tip diameter 30 mm) connected to a Picospritzer III microinjection system (Parker Hannifin Corporation) at the following coordinates from bregma: anterior–posterior (AP): +1.95 mm; medio–lateral (ML): +2.85 mm; dorso–ventral (DV): 3.3 mm. .. Immediately after the AAV injection, a GRIN lens (0.63 7.3 mmGLP-0673, Inscopix) was lowered into the aIC as previously described using a custom-built lens holder, and fixed to the skull using ultraviolet light-curable glue (Loctite 4305, Henkel) and miniature screws (P.A.

    Microinjection:

    Article Title: VIP-expressing interneurons in the anterior insular cortex contribute to sensory processing to regulate adaptive behavior.
    Article Snippet: .. Deep-brain Ca2+ imaging VIP-ires-cre mice (N = 7) were unilaterally injected with 300 nL AAV2/9.CAG.flex.GCaMP6s (Addgene, #100842) into the aIC using a glass pipette (tip diameter 30 mm) connected to a Picospritzer III microinjection system (Parker Hannifin Corporation) at the following coordinates from bregma: anterior–posterior (AP): +1.95 mm; medio–lateral (ML): +2.85 mm; dorso–ventral (DV): 3.3 mm. .. Immediately after the AAV injection, a GRIN lens (0.63 7.3 mmGLP-0673, Inscopix) was lowered into the aIC as previously described using a custom-built lens holder, and fixed to the skull using ultraviolet light-curable glue (Loctite 4305, Henkel) and miniature screws (P.A.

    Plasmid Preparation:

    Article Title: Remote neuronal activity drives glioma progression through SEMA4F.
    Article Snippet: Emmet Huang-Hobbs, Yi-Ting Cheng, Yeunjung Ko, Estefania Luna-Figueroa, Brittney Lozzi, Kathryn R. Taylor, Malcolm McDonald, Peihao He, Hsiao-Chi Chen, Yuhui Yang, Ehson Maleki, Zhung-Fu Lee, Sanjana Murali, Michael R. Williamson, Dongjoo Choi, Rachel Curry, James Bayley, Junsung Woo, Ali Jalali, Michelle Monje, Jeffrey L. Noebels, Akdes Serin Harmanci, Ganesh Rao & Benjamin Deneen1,2,3,4,6,9,10 ✉

    Article Title: Neural circuit pathology driven by Shank3 mutation disrupts social behaviors
    Article Snippet: AAV2/8 , Addgene Deposited by James M. Wilson (RRID: Addgene_112864) , Addgene plasmid # 112864. .. AAV2/9 , Addgene Deposited by James M. Wilson (RRID: Addgene_112865) , Addgene plasmid # 112865. .. Retrograde AAV , Addgene https://doi.org/10.1016/j.neuron.2016.09.021 , Addgene plasmid # 81070.

    Concentration Assay:

    Article Title: Remote neuronal activity drives glioma progression through SEMA4F.
    Article Snippet: Emmet Huang-Hobbs, Yi-Ting Cheng, Yeunjung Ko, Estefania Luna-Figueroa, Brittney Lozzi, Kathryn R. Taylor, Malcolm McDonald, Peihao He, Hsiao-Chi Chen, Yuhui Yang, Ehson Maleki, Zhung-Fu Lee, Sanjana Murali, Michael R. Williamson, Dongjoo Choi, Rachel Curry, James Bayley, Junsung Woo, Ali Jalali, Michelle Monje, Jeffrey L. Noebels, Akdes Serin Harmanci, Ganesh Rao & Benjamin Deneen1,2,3,4,6,9,10 ✉

    Virus:

    Article Title: VIP-expressing interneurons in the anterior insular cortex contribute to sensory processing to regulate adaptive behavior.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies VIP-rabbit Immunostar lot: 1744002; RRID:AB_572270 RFP-mouse Rockland lot: 37699; RRID:AB_2611063 GFP-goat Frontiers Institute lot: 2571574; RRID:AB_2571574 Bacterial and virus strains AAV2/1.syn.FLEX.splitTVA-EGFP-tTA Addgene #100798 AAV2/1.TREtight.mTagBFP2-B19G Addgene #100799 RV.EnvA.dG.mCherry In house production Batch 1 AAV2/5.CAG.flex.ArchT-GFP UNC vector core https://www.med.unc.edu/genetherapy/ vectorcore/ AAV2/5.CAG.flex.GFP UNC vector core https://www.med.unc.edu/genetherapy/ vectorcore/ AAV2/5.CamKIIa-hChR2(HI34R)-mCherry Addgene #26975 AAV2/9.CAG.flex.GCaMP6s Addgene #100842 Experimental models: Organisms/strains VIP-ires-cre mice Jackson Laboratory RRID:IMSR_JAX:010908 Ai9-tdTomato mice Jackson Laboratory RRID:IMSR_JAX:007909 Software and algorithms MATLAB MathWorks https://www.mathworks.com/products/ matlab Ca2+ imaging processing pipeline GitHub https://github.com/bahanonu/ calciumImagingAnalysis ANY-maze ANY-maze https://www.anymaze.co.uk GraphPad GraphPad Prism https://www.graphpad.com Python Python Software Foundation https://www.python.org Boris BORIS http://www.boris.unito.it/ Original code This Publication https://doi.org/10.5281/zenodo.6477827 ..

    Article Title: Post-Critical Period Transcriptional and Physiological Adaptations of Primary Sensory Cortex after Sensory Loss
    Article Snippet: Animals then received an IP injection of Antisedan (1mg/kg; Atipanezole, Zoetis) to 123 reverse the anesthesia. .. 124 125 Stereotaxic Surgery 126 At 3-4 weeks of age, mice were anesthetized with 1-3% isoflurane mixed with O2 and 127 unilaterally injected (left side) with 500nl of a virus encoding for channel rhodopsin (ChR2): 128 AAV2/9.hSynapsin.hChR2(H134R)-EYFP.WPRE.hGH (RRID: Addgene_26973, titre 2.1x1013). ..

    Software:

    Article Title: VIP-expressing interneurons in the anterior insular cortex contribute to sensory processing to regulate adaptive behavior.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies VIP-rabbit Immunostar lot: 1744002; RRID:AB_572270 RFP-mouse Rockland lot: 37699; RRID:AB_2611063 GFP-goat Frontiers Institute lot: 2571574; RRID:AB_2571574 Bacterial and virus strains AAV2/1.syn.FLEX.splitTVA-EGFP-tTA Addgene #100798 AAV2/1.TREtight.mTagBFP2-B19G Addgene #100799 RV.EnvA.dG.mCherry In house production Batch 1 AAV2/5.CAG.flex.ArchT-GFP UNC vector core https://www.med.unc.edu/genetherapy/ vectorcore/ AAV2/5.CAG.flex.GFP UNC vector core https://www.med.unc.edu/genetherapy/ vectorcore/ AAV2/5.CamKIIa-hChR2(HI34R)-mCherry Addgene #26975 AAV2/9.CAG.flex.GCaMP6s Addgene #100842 Experimental models: Organisms/strains VIP-ires-cre mice Jackson Laboratory RRID:IMSR_JAX:010908 Ai9-tdTomato mice Jackson Laboratory RRID:IMSR_JAX:007909 Software and algorithms MATLAB MathWorks https://www.mathworks.com/products/ matlab Ca2+ imaging processing pipeline GitHub https://github.com/bahanonu/ calciumImagingAnalysis ANY-maze ANY-maze https://www.anymaze.co.uk GraphPad GraphPad Prism https://www.graphpad.com Python Python Software Foundation https://www.python.org Boris BORIS http://www.boris.unito.it/ Original code This Publication https://doi.org/10.5281/zenodo.6477827 ..

    Produced:

    Article Title: Corticotropin-releasing hormone signaling from prefrontal cortex to lateral septum suppresses interaction with familiar mice.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Anti-c-fos antibody produced in rabbit Abcam #ab190289; RRID:AB_2737414 Anti-GFP antibody produced in chicken AVES Labs #GFP-1020; RRID:AB_10000240 Anti-GFP polyclonal antibody, Alexa Fluor 488 Thermo-Fisher Scientific #A21311; RRID:AB_221477 Anti-RFP antibody produced in rabbit Rockland Antibody #600-401-379; RRID:AB_2209751 Anti-mCherry antibody produced in goat Biorbyt #orb153320 Anti-GABA antibody produced in guinea-pig Abcam #ab17413; RRID:AB_443865 Donkey anti-goat IgG (H+L) secondary antibody, Alexa Fluor 568 conjugate Thermo-Fisher Scientific #A11057; RRID:AB_2534104 Goat anti-rabbit IgG (H+L) secondary antibody, Alexa Fluor 568 conjugate Thermo-Fisher Scientific #A11011; RRID:AB_143157 Goat anti-rabbit IgG (H+L) secondary antibody, Alexa Fluor 647 conjugate Thermo-Fisher Scientific #A32733; RRID: AB_2633282 Goat anti-guinea-pig IgG (H+L) secondary antibody, Alexa Fluor 647 conjugate Thermo-Fisher Scientific #A21450; RRID:AB_2735091 Goat anti-mouse IgG1 (H+L) secondary antibody, Alexa Fluor 647 conjugate Thermo-Fisher Scientific #A21240; RRID:AB_2536165 Goat anti-rat IgG (H+L) secondary antibody, Alexa Fluor 488 conjugate Thermo-Fisher Scientific #A48262; RRID:AB_2896330 Goat Anti-chicken IgG (H+L) secondary antibody, Alexa Fluor 488 Conjugate Thermo-Fisher Scientific #A11039; RRID:AB_142924 Chemicals, peptides, and recombinant proteins Stressin-1 Tocris #1608 Antalarmin Tocris #2778 DMSO Sigma-Aldrich #D8418 CNO Cayman Chemical #16882 CGP 55845 Tocris Cat# 1248 SR 95531 Tocris Cat# 1262 ISH probe Mm-Crh ACD Bio #316091 ISH probe mCherry-C2 ACD Bio #431201-C2 Experimental models: Organisms/strains C57BL/6J Mus musculus Jackson Laboratories RRID:IMSR_JAX:000664 B6(Cg)-Crhtm1(cre)Zjh/J Jackson Laboratories RRID:IMSR_JAX:012704 B6-Crhr1tm4(cre)Jde Jan Deussing RRID:MGI:6281608 B6.Cg-Gt(ROSA)26Sortm9(CAG-tdTomato)Hze/J Jackson Laboratories RRID:IMSR_JAX:007909 Recombinant DNA AAV2/DJ hSyn.FLEX.mGFP.2A.Synatophysin-mRuby Stanford vector core #1930 / Addgene #71760 AAV2/9 EF1a.DIO.hChR2(E123T/T159C).eYFP Addgene #35505-AAV9 HSV hEF1a.LSIL.GFP (HT) Massachusetts General Hospital #RN406 HSV hEF1a-Cre (HT) Massachusetts General Hospital #RN242 (Continued on next page) e1 Cell 186, 4152–4171.e1–e8, September 14, 2023 .. REAGENT or RESOURCE SOURCE IDENTIFIER AAV2/8 hSyn.DIO.hM4D(Gi)-mCherry Addgene #44362-AAV8 AAV2/8 hSyn.DIO.mCherry Addgene #50459-AAV8 AAV2/5-hSyn-DIO-hM3D(Gq)-mCherry Addgene #44361-AAV5 AAV2/5 hsyn.DIO.mCherry Addgene #50459-AAV5 AAV2/1 syn.FLEX.GCaMP6f.WPRE.SV40 Addgene #100833-AAV1 PX552 Addgene #60958 rAAV-U6-shRNA1(CRH)-CMV-EGFP-SV40-polyA Brain VTA #PT-2784 rAAV-U6-shRNA2(CRH)-CMV-EGFP-SV40-polyA Brain VTA #PT-2785 rAAV-U6-shRNA3(CRH)-CMV-EGFP-SV40-polyA Brain VTA #PT-2786 rAAV-U6-shRNA(scramble)-CMV-EGFP-SV40-polyA Brain VTA #PT-0916 rAAV-CMV-CRH-P2A-EGFP-WPRE-hGH-polyA Brain VTA #PT-2827 AAV2/9 CMV-DIO-(mCherry-U6)-shRNA(anti-Crh) Brain VTA #PT-2787 AAV2/9 CMV-DIO-(mCherry-U6)-shRNA(scrambled) Brain VTA #PT-2788 AAV2/9 hSyn.FLEX.dsRed-shRNA(vGAT) Addgene Addgene #67845 AAV 2/9 hSyn-flex-dsRed-shRNA(scrambled) Addgene Addgene #71383 AAV2/5 DIO.mGFP University of North Carolina #AV4310i AAV2/2 CAG.FLEX.ArchT-tdTomato University of North Carolina Addgene #28305 AAV2/2 CAG.FLEX.tdTomato University of North Carolina Addgene #28306 AAV2/1 syn.GCaMP6f.WPRE.SV40 Pennsylvania University #AV-1-PV2822 AAV2/9 syn.CRF1.0 Yulong Li Lab Ref. 51 AA2/2 hSyn1.hChR2(H134R)-mCherry.WPRE University of Zurich #V-124 AA2/2 hSyn1.mCherry.WPRE Addgene #114472-AAV2 Software AxoGraph AxoGraph 1.6.4 PRISM 9 Graphpad 9.0.1 (128) Microsoft Office Word Microsoft 2019 16.56 Microsoft Office Exel Microsoft 2019 Adobe Illustrator Adobe 2020 v24.1 FIDJI GPL v2 2.3.0/1.53f MATLAB Mathworks 2018 Python 3.10.2 Guppy Lerner Lab79 1.1.4 Leica Application Suite X Leica v3.7.4 ANY-maze Stoelting Co. 4.99 Doric Neuroscience Studio Doric 5.4.1.23 ll

    Recombinant:

    Article Title: Corticotropin-releasing hormone signaling from prefrontal cortex to lateral septum suppresses interaction with familiar mice.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Anti-c-fos antibody produced in rabbit Abcam #ab190289; RRID:AB_2737414 Anti-GFP antibody produced in chicken AVES Labs #GFP-1020; RRID:AB_10000240 Anti-GFP polyclonal antibody, Alexa Fluor 488 Thermo-Fisher Scientific #A21311; RRID:AB_221477 Anti-RFP antibody produced in rabbit Rockland Antibody #600-401-379; RRID:AB_2209751 Anti-mCherry antibody produced in goat Biorbyt #orb153320 Anti-GABA antibody produced in guinea-pig Abcam #ab17413; RRID:AB_443865 Donkey anti-goat IgG (H+L) secondary antibody, Alexa Fluor 568 conjugate Thermo-Fisher Scientific #A11057; RRID:AB_2534104 Goat anti-rabbit IgG (H+L) secondary antibody, Alexa Fluor 568 conjugate Thermo-Fisher Scientific #A11011; RRID:AB_143157 Goat anti-rabbit IgG (H+L) secondary antibody, Alexa Fluor 647 conjugate Thermo-Fisher Scientific #A32733; RRID: AB_2633282 Goat anti-guinea-pig IgG (H+L) secondary antibody, Alexa Fluor 647 conjugate Thermo-Fisher Scientific #A21450; RRID:AB_2735091 Goat anti-mouse IgG1 (H+L) secondary antibody, Alexa Fluor 647 conjugate Thermo-Fisher Scientific #A21240; RRID:AB_2536165 Goat anti-rat IgG (H+L) secondary antibody, Alexa Fluor 488 conjugate Thermo-Fisher Scientific #A48262; RRID:AB_2896330 Goat Anti-chicken IgG (H+L) secondary antibody, Alexa Fluor 488 Conjugate Thermo-Fisher Scientific #A11039; RRID:AB_142924 Chemicals, peptides, and recombinant proteins Stressin-1 Tocris #1608 Antalarmin Tocris #2778 DMSO Sigma-Aldrich #D8418 CNO Cayman Chemical #16882 CGP 55845 Tocris Cat# 1248 SR 95531 Tocris Cat# 1262 ISH probe Mm-Crh ACD Bio #316091 ISH probe mCherry-C2 ACD Bio #431201-C2 Experimental models: Organisms/strains C57BL/6J Mus musculus Jackson Laboratories RRID:IMSR_JAX:000664 B6(Cg)-Crhtm1(cre)Zjh/J Jackson Laboratories RRID:IMSR_JAX:012704 B6-Crhr1tm4(cre)Jde Jan Deussing RRID:MGI:6281608 B6.Cg-Gt(ROSA)26Sortm9(CAG-tdTomato)Hze/J Jackson Laboratories RRID:IMSR_JAX:007909 Recombinant DNA AAV2/DJ hSyn.FLEX.mGFP.2A.Synatophysin-mRuby Stanford vector core #1930 / Addgene #71760 AAV2/9 EF1a.DIO.hChR2(E123T/T159C).eYFP Addgene #35505-AAV9 HSV hEF1a.LSIL.GFP (HT) Massachusetts General Hospital #RN406 HSV hEF1a-Cre (HT) Massachusetts General Hospital #RN242 (Continued on next page) e1 Cell 186, 4152–4171.e1–e8, September 14, 2023 .. REAGENT or RESOURCE SOURCE IDENTIFIER AAV2/8 hSyn.DIO.hM4D(Gi)-mCherry Addgene #44362-AAV8 AAV2/8 hSyn.DIO.mCherry Addgene #50459-AAV8 AAV2/5-hSyn-DIO-hM3D(Gq)-mCherry Addgene #44361-AAV5 AAV2/5 hsyn.DIO.mCherry Addgene #50459-AAV5 AAV2/1 syn.FLEX.GCaMP6f.WPRE.SV40 Addgene #100833-AAV1 PX552 Addgene #60958 rAAV-U6-shRNA1(CRH)-CMV-EGFP-SV40-polyA Brain VTA #PT-2784 rAAV-U6-shRNA2(CRH)-CMV-EGFP-SV40-polyA Brain VTA #PT-2785 rAAV-U6-shRNA3(CRH)-CMV-EGFP-SV40-polyA Brain VTA #PT-2786 rAAV-U6-shRNA(scramble)-CMV-EGFP-SV40-polyA Brain VTA #PT-0916 rAAV-CMV-CRH-P2A-EGFP-WPRE-hGH-polyA Brain VTA #PT-2827 AAV2/9 CMV-DIO-(mCherry-U6)-shRNA(anti-Crh) Brain VTA #PT-2787 AAV2/9 CMV-DIO-(mCherry-U6)-shRNA(scrambled) Brain VTA #PT-2788 AAV2/9 hSyn.FLEX.dsRed-shRNA(vGAT) Addgene Addgene #67845 AAV 2/9 hSyn-flex-dsRed-shRNA(scrambled) Addgene Addgene #71383 AAV2/5 DIO.mGFP University of North Carolina #AV4310i AAV2/2 CAG.FLEX.ArchT-tdTomato University of North Carolina Addgene #28305 AAV2/2 CAG.FLEX.tdTomato University of North Carolina Addgene #28306 AAV2/1 syn.GCaMP6f.WPRE.SV40 Pennsylvania University #AV-1-PV2822 AAV2/9 syn.CRF1.0 Yulong Li Lab Ref. 51 AA2/2 hSyn1.hChR2(H134R)-mCherry.WPRE University of Zurich #V-124 AA2/2 hSyn1.mCherry.WPRE Addgene #114472-AAV2 Software AxoGraph AxoGraph 1.6.4 PRISM 9 Graphpad 9.0.1 (128) Microsoft Office Word Microsoft 2019 16.56 Microsoft Office Exel Microsoft 2019 Adobe Illustrator Adobe 2020 v24.1 FIDJI GPL v2 2.3.0/1.53f MATLAB Mathworks 2018 Python 3.10.2 Guppy Lerner Lab79 1.1.4 Leica Application Suite X Leica v3.7.4 ANY-maze Stoelting Co. 4.99 Doric Neuroscience Studio Doric 5.4.1.23 ll

    In Situ Hybridization:

    Article Title: Corticotropin-releasing hormone signaling from prefrontal cortex to lateral septum suppresses interaction with familiar mice.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Anti-c-fos antibody produced in rabbit Abcam #ab190289; RRID:AB_2737414 Anti-GFP antibody produced in chicken AVES Labs #GFP-1020; RRID:AB_10000240 Anti-GFP polyclonal antibody, Alexa Fluor 488 Thermo-Fisher Scientific #A21311; RRID:AB_221477 Anti-RFP antibody produced in rabbit Rockland Antibody #600-401-379; RRID:AB_2209751 Anti-mCherry antibody produced in goat Biorbyt #orb153320 Anti-GABA antibody produced in guinea-pig Abcam #ab17413; RRID:AB_443865 Donkey anti-goat IgG (H+L) secondary antibody, Alexa Fluor 568 conjugate Thermo-Fisher Scientific #A11057; RRID:AB_2534104 Goat anti-rabbit IgG (H+L) secondary antibody, Alexa Fluor 568 conjugate Thermo-Fisher Scientific #A11011; RRID:AB_143157 Goat anti-rabbit IgG (H+L) secondary antibody, Alexa Fluor 647 conjugate Thermo-Fisher Scientific #A32733; RRID: AB_2633282 Goat anti-guinea-pig IgG (H+L) secondary antibody, Alexa Fluor 647 conjugate Thermo-Fisher Scientific #A21450; RRID:AB_2735091 Goat anti-mouse IgG1 (H+L) secondary antibody, Alexa Fluor 647 conjugate Thermo-Fisher Scientific #A21240; RRID:AB_2536165 Goat anti-rat IgG (H+L) secondary antibody, Alexa Fluor 488 conjugate Thermo-Fisher Scientific #A48262; RRID:AB_2896330 Goat Anti-chicken IgG (H+L) secondary antibody, Alexa Fluor 488 Conjugate Thermo-Fisher Scientific #A11039; RRID:AB_142924 Chemicals, peptides, and recombinant proteins Stressin-1 Tocris #1608 Antalarmin Tocris #2778 DMSO Sigma-Aldrich #D8418 CNO Cayman Chemical #16882 CGP 55845 Tocris Cat# 1248 SR 95531 Tocris Cat# 1262 ISH probe Mm-Crh ACD Bio #316091 ISH probe mCherry-C2 ACD Bio #431201-C2 Experimental models: Organisms/strains C57BL/6J Mus musculus Jackson Laboratories RRID:IMSR_JAX:000664 B6(Cg)-Crhtm1(cre)Zjh/J Jackson Laboratories RRID:IMSR_JAX:012704 B6-Crhr1tm4(cre)Jde Jan Deussing RRID:MGI:6281608 B6.Cg-Gt(ROSA)26Sortm9(CAG-tdTomato)Hze/J Jackson Laboratories RRID:IMSR_JAX:007909 Recombinant DNA AAV2/DJ hSyn.FLEX.mGFP.2A.Synatophysin-mRuby Stanford vector core #1930 / Addgene #71760 AAV2/9 EF1a.DIO.hChR2(E123T/T159C).eYFP Addgene #35505-AAV9 HSV hEF1a.LSIL.GFP (HT) Massachusetts General Hospital #RN406 HSV hEF1a-Cre (HT) Massachusetts General Hospital #RN242 (Continued on next page) e1 Cell 186, 4152–4171.e1–e8, September 14, 2023 .. REAGENT or RESOURCE SOURCE IDENTIFIER AAV2/8 hSyn.DIO.hM4D(Gi)-mCherry Addgene #44362-AAV8 AAV2/8 hSyn.DIO.mCherry Addgene #50459-AAV8 AAV2/5-hSyn-DIO-hM3D(Gq)-mCherry Addgene #44361-AAV5 AAV2/5 hsyn.DIO.mCherry Addgene #50459-AAV5 AAV2/1 syn.FLEX.GCaMP6f.WPRE.SV40 Addgene #100833-AAV1 PX552 Addgene #60958 rAAV-U6-shRNA1(CRH)-CMV-EGFP-SV40-polyA Brain VTA #PT-2784 rAAV-U6-shRNA2(CRH)-CMV-EGFP-SV40-polyA Brain VTA #PT-2785 rAAV-U6-shRNA3(CRH)-CMV-EGFP-SV40-polyA Brain VTA #PT-2786 rAAV-U6-shRNA(scramble)-CMV-EGFP-SV40-polyA Brain VTA #PT-0916 rAAV-CMV-CRH-P2A-EGFP-WPRE-hGH-polyA Brain VTA #PT-2827 AAV2/9 CMV-DIO-(mCherry-U6)-shRNA(anti-Crh) Brain VTA #PT-2787 AAV2/9 CMV-DIO-(mCherry-U6)-shRNA(scrambled) Brain VTA #PT-2788 AAV2/9 hSyn.FLEX.dsRed-shRNA(vGAT) Addgene Addgene #67845 AAV 2/9 hSyn-flex-dsRed-shRNA(scrambled) Addgene Addgene #71383 AAV2/5 DIO.mGFP University of North Carolina #AV4310i AAV2/2 CAG.FLEX.ArchT-tdTomato University of North Carolina Addgene #28305 AAV2/2 CAG.FLEX.tdTomato University of North Carolina Addgene #28306 AAV2/1 syn.GCaMP6f.WPRE.SV40 Pennsylvania University #AV-1-PV2822 AAV2/9 syn.CRF1.0 Yulong Li Lab Ref. 51 AA2/2 hSyn1.hChR2(H134R)-mCherry.WPRE University of Zurich #V-124 AA2/2 hSyn1.mCherry.WPRE Addgene #114472-AAV2 Software AxoGraph AxoGraph 1.6.4 PRISM 9 Graphpad 9.0.1 (128) Microsoft Office Word Microsoft 2019 16.56 Microsoft Office Exel Microsoft 2019 Adobe Illustrator Adobe 2020 v24.1 FIDJI GPL v2 2.3.0/1.53f MATLAB Mathworks 2018 Python 3.10.2 Guppy Lerner Lab79 1.1.4 Leica Application Suite X Leica v3.7.4 ANY-maze Stoelting Co. 4.99 Doric Neuroscience Studio Doric 5.4.1.23 ll



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    Image Search Results


    AV-Mito untethering relies on AV-bound TBC1D15 GAP activity and is required for autophagic cargo clearance in tauopathy axons. ( A and B ) Representative images ( A ) and quantitative analysis ( B ) of TBC1D15 localization in normal axons. Data were expressed as the percentage of AVs or mitochondria positive for TBC1D15 and quantified from the total numbers of AVs or mitochondria ( n , indicated in parentheses) from the axons of 51 neurons ( B ). Arrows: TBC1D15-positive AVs; arrowheads: a TBC1D15-negative AV in an AV-Mito contact; asterisk: mitophagosome. ( C and D ) Representative kymographs ( C ) and quantitative analysis ( D ) of TBC1D15-tagged AVs in axons with 24-hour trehalose incubation. The relative motility of AVs was quantified from the axons of 17 neurons as indicated in parentheses ( D ). Arrows: TBC1D15-tagged motile AVs. ( E - H ) Representative kymographs ( E ) and quantitative analysis ( F - H ) of AV-Mito contacts in axons expressing TBC1D15 or TBC1D15 D397A mutant. The data were quantified and expressed as AV-Mito contact duration and its frequency, the contact number per 100 μm axonal length, the percentage of AVs in contacts, and the relative motility of AVs. Data were quantified from the total numbers of neurons ( n ) and AV-Mito contacts (c) as indicated in parentheses ( F - H ). Arrows: AV-Mito contacts. ( I and J ) Representative images ( I ) and quantitative analysis ( J ) of p62 in tauP301S axons with and without OE of TBC1D15 or TBC1D15 D397A mutant. The data were quantified and expressed as GFP-p62 puncta number per 100 μm axonal length. Data were quantified from the total numbers of neurons ( n ) as indicated in parentheses ( J ). ( K and L ) Representative blots ( K ) and quantitative analysis ( L ) of tauP301S Tg neurons transduced with and without AAV-hTBC1D15. Protein intensities were normalized to those in control tauP301S neurons without TBC1D15 OE. Data were collected from two ( B and D ), three ( F-H and J ), or five ( L ) dissections. Data were expressed as the mean ± SEM and analyzed using linear mixed-effects models ( B , F - H , and J ) or by two-sided Student’s t -test ( L ). Scale bars: 10 μm.

    Journal: bioRxiv

    Article Title: Dysregulation of a novel autophagosome-mitochondria contact contributes to autophagy dysfunction and neurodegeneration in tauopathy

    doi: 10.64898/2026.03.23.713823

    Figure Lengend Snippet: AV-Mito untethering relies on AV-bound TBC1D15 GAP activity and is required for autophagic cargo clearance in tauopathy axons. ( A and B ) Representative images ( A ) and quantitative analysis ( B ) of TBC1D15 localization in normal axons. Data were expressed as the percentage of AVs or mitochondria positive for TBC1D15 and quantified from the total numbers of AVs or mitochondria ( n , indicated in parentheses) from the axons of 51 neurons ( B ). Arrows: TBC1D15-positive AVs; arrowheads: a TBC1D15-negative AV in an AV-Mito contact; asterisk: mitophagosome. ( C and D ) Representative kymographs ( C ) and quantitative analysis ( D ) of TBC1D15-tagged AVs in axons with 24-hour trehalose incubation. The relative motility of AVs was quantified from the axons of 17 neurons as indicated in parentheses ( D ). Arrows: TBC1D15-tagged motile AVs. ( E - H ) Representative kymographs ( E ) and quantitative analysis ( F - H ) of AV-Mito contacts in axons expressing TBC1D15 or TBC1D15 D397A mutant. The data were quantified and expressed as AV-Mito contact duration and its frequency, the contact number per 100 μm axonal length, the percentage of AVs in contacts, and the relative motility of AVs. Data were quantified from the total numbers of neurons ( n ) and AV-Mito contacts (c) as indicated in parentheses ( F - H ). Arrows: AV-Mito contacts. ( I and J ) Representative images ( I ) and quantitative analysis ( J ) of p62 in tauP301S axons with and without OE of TBC1D15 or TBC1D15 D397A mutant. The data were quantified and expressed as GFP-p62 puncta number per 100 μm axonal length. Data were quantified from the total numbers of neurons ( n ) as indicated in parentheses ( J ). ( K and L ) Representative blots ( K ) and quantitative analysis ( L ) of tauP301S Tg neurons transduced with and without AAV-hTBC1D15. Protein intensities were normalized to those in control tauP301S neurons without TBC1D15 OE. Data were collected from two ( B and D ), three ( F-H and J ), or five ( L ) dissections. Data were expressed as the mean ± SEM and analyzed using linear mixed-effects models ( B , F - H , and J ) or by two-sided Student’s t -test ( L ). Scale bars: 10 μm.

    Article Snippet: The AAV2/9-mCherry, AAV2/9-mCherry-hTBC1D15, and AAV2/9-mCherry-hTBC1D15 D397A mutant viruses were produced by Vector BioLabs.

    Techniques: Activity Assay, Incubation, Expressing, Mutagenesis, Transduction, Control

    TBC1D15 OE reduces AV-Mito hyper-tethering and alleviates p62 accumulation and tau pathology in tauopathy mouse brains. ( A and B ) Representative TEM images ( A ) and quantitative analysis ( B ) of the hippocampi in 8-month-old tauP301S Tg mouse brains infected with AAV-mCherry or AAV-mCherry-hTBC1D15. The number of presynaptic AVs, the percentage of presynaptic terminals containing AVs, and the number of AVs or mitochondria in AV-Mito contacts were quantified and normalized to or compared to those in control tauP301S Tg mouse brains. Data were collected from two mice per group; the total numbers of presynaptic terminals ( n ) are indicated in parentheses ( B ). ( C and D ) Representative images ( C ) and quantitative analysis ( D ) of p62 accumulation in 10-month-old tauP301S Tg mouse hippocampi with and without OE of TBC1D15 or TBC1D15 D397A. p62 fluorescence mean intensity in the hippocampal mossy fibers was quantified and normalized to that of AAV-mCherry-injected tauP301S Tg controls. Data were collected from three mice per group; the total numbers of imaging slice sections ( n ) are indicated in parentheses ( D ). SYP: synaptophysin. Arrows: p62 clusters at SYP-indicated presynaptic terminals. ( E and F ) Representative images ( E ) and quantitative analysis ( F ) of tau accumulation in 10-month-old non-Tg and tauP301S Tg hippocampi with and without OE of TBC1D15 or TBC1D15 D397A. AT8 and PHF1 antibody-marked phospho-tau mean intensities in the hippocampal mossy fibers were quantified and normalized to those of AAV-mCherry-injected tauP301S Tg control mice. Data were collected from three mice per group; the total numbers of imaging slice sections ( n ) are indicated in parentheses ( F ). ( G and H ) Representative blots ( G ) and quantitative analysis ( H ) of AT8 and PHF1 antibody-marked phospho-tau and Tau5 antibody-indicated total tau in sarkosyl-extractable and sarkosyl-insoluble fractions from 10-month-old tauP301S Tg mouse brains with and without TBC1D15 OE. Protein intensities were normalized to those in AAV-mCherry-injected tauP301S Tg controls. Data were quantified from four mice per group. Data were expressed as the mean ± SEM and analyzed using linear mixed-effects models ( B, D and F ) or by two-sided Student’s t -test ( H ). Scale bars: 100 nm ( A ), 10 μm ( C ), and 20 μm ( E ).

    Journal: bioRxiv

    Article Title: Dysregulation of a novel autophagosome-mitochondria contact contributes to autophagy dysfunction and neurodegeneration in tauopathy

    doi: 10.64898/2026.03.23.713823

    Figure Lengend Snippet: TBC1D15 OE reduces AV-Mito hyper-tethering and alleviates p62 accumulation and tau pathology in tauopathy mouse brains. ( A and B ) Representative TEM images ( A ) and quantitative analysis ( B ) of the hippocampi in 8-month-old tauP301S Tg mouse brains infected with AAV-mCherry or AAV-mCherry-hTBC1D15. The number of presynaptic AVs, the percentage of presynaptic terminals containing AVs, and the number of AVs or mitochondria in AV-Mito contacts were quantified and normalized to or compared to those in control tauP301S Tg mouse brains. Data were collected from two mice per group; the total numbers of presynaptic terminals ( n ) are indicated in parentheses ( B ). ( C and D ) Representative images ( C ) and quantitative analysis ( D ) of p62 accumulation in 10-month-old tauP301S Tg mouse hippocampi with and without OE of TBC1D15 or TBC1D15 D397A. p62 fluorescence mean intensity in the hippocampal mossy fibers was quantified and normalized to that of AAV-mCherry-injected tauP301S Tg controls. Data were collected from three mice per group; the total numbers of imaging slice sections ( n ) are indicated in parentheses ( D ). SYP: synaptophysin. Arrows: p62 clusters at SYP-indicated presynaptic terminals. ( E and F ) Representative images ( E ) and quantitative analysis ( F ) of tau accumulation in 10-month-old non-Tg and tauP301S Tg hippocampi with and without OE of TBC1D15 or TBC1D15 D397A. AT8 and PHF1 antibody-marked phospho-tau mean intensities in the hippocampal mossy fibers were quantified and normalized to those of AAV-mCherry-injected tauP301S Tg control mice. Data were collected from three mice per group; the total numbers of imaging slice sections ( n ) are indicated in parentheses ( F ). ( G and H ) Representative blots ( G ) and quantitative analysis ( H ) of AT8 and PHF1 antibody-marked phospho-tau and Tau5 antibody-indicated total tau in sarkosyl-extractable and sarkosyl-insoluble fractions from 10-month-old tauP301S Tg mouse brains with and without TBC1D15 OE. Protein intensities were normalized to those in AAV-mCherry-injected tauP301S Tg controls. Data were quantified from four mice per group. Data were expressed as the mean ± SEM and analyzed using linear mixed-effects models ( B, D and F ) or by two-sided Student’s t -test ( H ). Scale bars: 100 nm ( A ), 10 μm ( C ), and 20 μm ( E ).

    Article Snippet: The AAV2/9-mCherry, AAV2/9-mCherry-hTBC1D15, and AAV2/9-mCherry-hTBC1D15 D397A mutant viruses were produced by Vector BioLabs.

    Techniques: Infection, Control, Fluorescence, Injection, Imaging

    Attenuation of neurodegeneration and memory deficits in tauopathy mice with TBC1D15 OE. (A and B ) Representative images ( A ) and quantitative analysis ( B ) of presynaptic terminal and neuron densities in 10-month-old non-Tg and tauP301S Tg hippocampi with and without OE of TBC1D15 or TBC1D15 D397A. The mean intensity of SYP-indicated presynaptic terminals in the hippocampal mossy fibers and the number of NeuN-labeled neurons in hippocampal CA3 areas marked by rectangles (Zoomed-in images shown in the lower row of each panel in A ) were quantified and normalized to those of AAV-mCherry-injected non-Tg control mice. Data were collected from three mice per group. ( C ) Contextual fear conditioning task performed in 7-month-old non-Tg and tauP301S Tg male mice infected with AAV-mCherry or AAV-mCherry-hTBC1D15 ( n = 15-17 male mice per group). Data were expressed as the mean ± SEM and analyzed using linear mixed-effects models ( B) or by one-way ANOVA, followed by Sidak’s post-hoc test ( C ). Scale bars ( A) : 20 μm (upper row, SYP), 250 μm (upper row, NeuN), and 25 μm (lower row, NeuN).

    Journal: bioRxiv

    Article Title: Dysregulation of a novel autophagosome-mitochondria contact contributes to autophagy dysfunction and neurodegeneration in tauopathy

    doi: 10.64898/2026.03.23.713823

    Figure Lengend Snippet: Attenuation of neurodegeneration and memory deficits in tauopathy mice with TBC1D15 OE. (A and B ) Representative images ( A ) and quantitative analysis ( B ) of presynaptic terminal and neuron densities in 10-month-old non-Tg and tauP301S Tg hippocampi with and without OE of TBC1D15 or TBC1D15 D397A. The mean intensity of SYP-indicated presynaptic terminals in the hippocampal mossy fibers and the number of NeuN-labeled neurons in hippocampal CA3 areas marked by rectangles (Zoomed-in images shown in the lower row of each panel in A ) were quantified and normalized to those of AAV-mCherry-injected non-Tg control mice. Data were collected from three mice per group. ( C ) Contextual fear conditioning task performed in 7-month-old non-Tg and tauP301S Tg male mice infected with AAV-mCherry or AAV-mCherry-hTBC1D15 ( n = 15-17 male mice per group). Data were expressed as the mean ± SEM and analyzed using linear mixed-effects models ( B) or by one-way ANOVA, followed by Sidak’s post-hoc test ( C ). Scale bars ( A) : 20 μm (upper row, SYP), 250 μm (upper row, NeuN), and 25 μm (lower row, NeuN).

    Article Snippet: The AAV2/9-mCherry, AAV2/9-mCherry-hTBC1D15, and AAV2/9-mCherry-hTBC1D15 D397A mutant viruses were produced by Vector BioLabs.

    Techniques: Labeling, Injection, Control, Infection