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lsm5 pascal software version 3.2  (Carl Zeiss)


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    Structured Review

    Carl Zeiss lsm5 pascal software version 3.2
    Quantitative analysis of confocal images. <t>Fluorescence</t> intensities for Bodipy-ceramide in the presence and absence of anti-cytoskeleton agent were measured by Zeiss LSM 5 PASCAL software version 3.2. Labeled trophozoites were randomly selected and analyzed as described Materials and methods. Results (fluorescence/area × 104) show that vinorelbine reduces ceramide uptake significantly.
    Lsm5 Pascal Software Version 3.2, supplied by Carl Zeiss, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/zeiss+histogram+analysis+function/5+confocal+lsm+microscope+pascal/pmc01831817-223-2-11
    Average 90 stars, based on 1 article reviews
    lsm5 pascal software version 3.2 - by Bioz Stars, 2026-09
    90/100 stars

    Images

    1) Product Images from "Clathrin-dependent pathways and the cytoskeleton network are involved in ceramide endocytosis by a parasitic protozoan, Giardia lamblia"

    Article Title: Clathrin-dependent pathways and the cytoskeleton network are involved in ceramide endocytosis by a parasitic protozoan, Giardia lamblia

    Journal:

    doi: 10.1016/j.ijpara.2006.09.008

    Quantitative analysis of confocal images. Fluorescence intensities for Bodipy-ceramide in the presence and absence of anti-cytoskeleton agent were measured by Zeiss LSM 5 PASCAL software version 3.2. Labeled trophozoites were randomly selected and analyzed as described Materials and methods. Results (fluorescence/area × 104) show that vinorelbine reduces ceramide uptake significantly.
    Figure Legend Snippet: Quantitative analysis of confocal images. Fluorescence intensities for Bodipy-ceramide in the presence and absence of anti-cytoskeleton agent were measured by Zeiss LSM 5 PASCAL software version 3.2. Labeled trophozoites were randomly selected and analyzed as described Materials and methods. Results (fluorescence/area × 104) show that vinorelbine reduces ceramide uptake significantly.

    Techniques Used: Fluorescence, Software, Labeling

    Potassium-depletion affects the colocalization of Bodipy-ceramide with anti-clathrin antibody. Both control and K+-depleted cells were first treated with Bodipy-ceramide (200 nM) for 30 min before reacting with anti-clathrin antibody. A) a) identifies clathrin-positive structures in trophozoites cultured in normal growth medium. b) is the 3D reconstruction of the same picture (a) using VIS-ART software (Carl Zeiss). Insets (a and b) show the association of vesicles with plasma membranes. B) c) demonstrates the localization of clathrin-positive vesicles in the presence of ceramide, which reveals enlargement of vesicles and migration towards endoplasmic reticulum/perinuclear regions. d) depicts Bodipy-ceramide labeling of trophozoites; and e) is the colocalization of ceramide with clathrin-coated vesicles in the endoplasmic reticulum/perinuclear regions. f, g) show clathrin-positive structures and Bodipy-ceramide labeling of K+-depleted cells. K+-depletion causes puffiness of trophozoites, illuminates discrete and isolated clathrin-like vesicles (f), and lowers ceramide uptake significantly (g). h) is the merger of images of (f) and (g). Histograms of fluorescence images (fluorescence/area × 104, measured by Zeiss LSM5 PASCAL software version 3.2) in (C) show the relative amount of Bodipy-ceramide internalized by parasites in control and K+-depleted cells. Arrowheads denote endoplasmic reticulum/perinuclear membranes and arrows indicate vesicle-like structures. Bars: 5 μM.
    Figure Legend Snippet: Potassium-depletion affects the colocalization of Bodipy-ceramide with anti-clathrin antibody. Both control and K+-depleted cells were first treated with Bodipy-ceramide (200 nM) for 30 min before reacting with anti-clathrin antibody. A) a) identifies clathrin-positive structures in trophozoites cultured in normal growth medium. b) is the 3D reconstruction of the same picture (a) using VIS-ART software (Carl Zeiss). Insets (a and b) show the association of vesicles with plasma membranes. B) c) demonstrates the localization of clathrin-positive vesicles in the presence of ceramide, which reveals enlargement of vesicles and migration towards endoplasmic reticulum/perinuclear regions. d) depicts Bodipy-ceramide labeling of trophozoites; and e) is the colocalization of ceramide with clathrin-coated vesicles in the endoplasmic reticulum/perinuclear regions. f, g) show clathrin-positive structures and Bodipy-ceramide labeling of K+-depleted cells. K+-depletion causes puffiness of trophozoites, illuminates discrete and isolated clathrin-like vesicles (f), and lowers ceramide uptake significantly (g). h) is the merger of images of (f) and (g). Histograms of fluorescence images (fluorescence/area × 104, measured by Zeiss LSM5 PASCAL software version 3.2) in (C) show the relative amount of Bodipy-ceramide internalized by parasites in control and K+-depleted cells. Arrowheads denote endoplasmic reticulum/perinuclear membranes and arrows indicate vesicle-like structures. Bars: 5 μM.

    Techniques Used: Control, Cell Culture, Software, Clinical Proteomics, Migration, Labeling, Isolation, Fluorescence

    Related Articles

    Fluorescence:

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    Article Snippet: .. Confocal fluorescence images of epidermal cells were obtained with an LSM5 Pascal (Zeiss) laser-scanning microscope with a Plan-Apochromat403/1.2 objective lens. ..

    Article Title: Composite Fluorescence Encoding Technology Based on Tetrahedral DNA Framework for Logical Distinction and Multiplexed Recognition.
    Article Snippet: Multiplexed bioanalysis and deciphering their regulatory relationships have great significance for the diagnosis and treatment of diseases.. In this study, a composite fluorescence encoding technology (CFET) combining spectrum and intensity was developed with tetrahedral DNA frameworks (TDFs) as carriers and four Alexa Fluor dyes (AF405, AF488, AF546, and AF647) as tags.. Sixty-nine CFET codes could be established by altering the types and numbers of AF dyes at the vertexes of TDF.

    Laser-Scanning Microscopy:

    Article Title: Supporting Information for Shade-induced ROS/NO reinforce COP1-mediated diffuse cell growth
    Article Snippet: .. Confocal fluorescence images of epidermal cells were obtained with an LSM5 Pascal (Zeiss) laser-scanning microscope with a Plan-Apochromat403/1.2 objective lens. ..

    Article Title: Phosphorylated Toll-like receptor 3 nuclear translocation in cancer cell promotes metastasis and chemoresistance
    Article Snippet: .. For immunofluorescence, images were captured by a Zeiss LSM 5 Pascal Laser Scanning Microscope. ..

    other:

    Article Title: Cell Shock Absorption via Stress Relaxation Hydrogel Microspheres for Alleviating Endoplasmic Reticulum Stress in Chondrocytes
    Article Snippet: Characterization of the microspheres involved bright-field microscopy (LSM800) to check hydrogel synthesis and particle size, LSCM (laser scanning confocal microscopy) (Zeiss) to observe DIR dye-loaded liposome distribution, and UV spectrophotometry (Eppendorf) to measure TUDCA encapsulation and release.

    Article Title: Supporting Information for Shade-induced ROS/NO reinforce COP1-mediated diffuse cell growth
    Article Snippet: Confocal fluorescence images from the epidermis and the first sub-epidermal layers of the hypocotyl were obtained by using a LSM5 Pascal laser-scanning microscope (Zeiss; https://www.zeiss.com/) with a water-immersion objective lens (C-Apochromat X40/1.2, Zeiss).

    Article Title: 6-Shogaol Alleviates Endotoxin-Induced Uveitis via Activation of HIF-1α to Regulate Inflammatory Responses and Endoplasmic Reticulum Stress.
    Article Snippet: Images were taken by fluorescence microscopy (Zeiss Axio Vert, Jena, Germany).

    Article Title: Supporting Information for Constitutively active B2 Raf-like kinases are required for drought- responsive gene expression upstream of ABA-activated SnRK2 kinases
    Article Snippet: For fluorescence observations, leaf cells were observed under a confocal laser-scanning microscope (LSM5 PASCAL, Carl Zeiss).

    Imaging:

    Article Title: Appendix Supplementary Methods TPC2 rescues lysosomal storage in mucolipidosis type IV, Niemann-Pick type C1 and Batten disease
    Article Snippet: .. The Magic Red Cathepsin B Kit was prepared according to manufacturer’s instructions and the iPSC-derived neurons loaded for 60 min at 37oC before imaging with a Zeiss LSM880 confocal microscope, equipped with a 37°C incubation unit and a 63X water immersion objective. ..

    Microscopy:

    Article Title: Appendix Supplementary Methods TPC2 rescues lysosomal storage in mucolipidosis type IV, Niemann-Pick type C1 and Batten disease
    Article Snippet: .. The Magic Red Cathepsin B Kit was prepared according to manufacturer’s instructions and the iPSC-derived neurons loaded for 60 min at 37oC before imaging with a Zeiss LSM880 confocal microscope, equipped with a 37°C incubation unit and a 63X water immersion objective. ..

    Article Title: Composite Fluorescence Encoding Technology Based on Tetrahedral DNA Framework for Logical Distinction and Multiplexed Recognition.
    Article Snippet: Multiplexed bioanalysis and deciphering their regulatory relationships have great significance for the diagnosis and treatment of diseases.. In this study, a composite fluorescence encoding technology (CFET) combining spectrum and intensity was developed with tetrahedral DNA frameworks (TDFs) as carriers and four Alexa Fluor dyes (AF405, AF488, AF546, and AF647) as tags.. Sixty-nine CFET codes could be established by altering the types and numbers of AF dyes at the vertexes of TDF.

    Incubation:

    Article Title: Appendix Supplementary Methods TPC2 rescues lysosomal storage in mucolipidosis type IV, Niemann-Pick type C1 and Batten disease
    Article Snippet: .. The Magic Red Cathepsin B Kit was prepared according to manufacturer’s instructions and the iPSC-derived neurons loaded for 60 min at 37oC before imaging with a Zeiss LSM880 confocal microscope, equipped with a 37°C incubation unit and a 63X water immersion objective. ..

    Immunofluorescence:

    Article Title: Phosphorylated Toll-like receptor 3 nuclear translocation in cancer cell promotes metastasis and chemoresistance
    Article Snippet: .. For immunofluorescence, images were captured by a Zeiss LSM 5 Pascal Laser Scanning Microscope. ..



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