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Structured Review

Mendeley Ltd spatial transcriptome datasets
Overview of data content and functions of SPathDB. The left panel contains the database content, which includes the spatial <t>transcriptome</t> dataset and pathway data content, and construction of spatial pathway activity profiles. The right panel contains the tools of SPathDB to retrieve, analyze and visualize spatial pathway activity.
Spatial Transcriptome Datasets, supplied by Mendeley Ltd, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/xenium+spatial+transcriptomic+dataset/datasets+spatial+transcriptome/pmc11701687-28-0-22
Average 86 stars, based on 1 article reviews
spatial transcriptome datasets - by Bioz Stars, 2026-09
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1) Product Images from "SPathDB: a comprehensive database of spatial pathway activity atlas"

Article Title: SPathDB: a comprehensive database of spatial pathway activity atlas

Journal: Nucleic Acids Research

doi: 10.1093/nar/gkae1041

Overview of data content and functions of SPathDB. The left panel contains the database content, which includes the spatial transcriptome dataset and pathway data content, and construction of spatial pathway activity profiles. The right panel contains the tools of SPathDB to retrieve, analyze and visualize spatial pathway activity.
Figure Legend Snippet: Overview of data content and functions of SPathDB. The left panel contains the database content, which includes the spatial transcriptome dataset and pathway data content, and construction of spatial pathway activity profiles. The right panel contains the tools of SPathDB to retrieve, analyze and visualize spatial pathway activity.

Techniques Used: Activity Assay

Related Articles

Expressing:

Article Title: Targeting SPAK suppresses progression and averts an immune exhaustive microenvironment in hepatocellular carcinoma.
Article Snippet: .. Combined targeting SPAK and PD-1 showed enhanced efficacy in HCC. (a) Representative tissue region maps and expression analysis of SPAK levels from a spatial transcriptome dataset of ICI responders and non-responders (Mendeley Data: skrx2fz79n). (b) Representative abdominal MRI images, representative IHC staining and quantitative IHC analysis of SPAK levels performed on human HCC tissue obtained before and after treatment of ICI responders (n = 7 patients) and non-responders (n = 12 patients) (scale bars, 100 μm). (c) A schematic representation of the treatment strategy in the DEN/CCl4-induced HCC model. (d-e) Gross images of livers (scale bars, 5 mm), representative H&E staining (scale bars, 1000 μm), and tumor burden (n = 5 mice) from the indicated DEN/CCl4-induced HCC model. (f) A schematic representation of the treatment strategy in the AKT/NRasV12-induced HCC model. (g-h) Gross images of livers (scale bars, 5 mm), representative H&E staining (scale bars, 1000 μm), and tumor burden (n = 5 mice) from the indicated AKT/NRasV12-induced HCC model. (i) A schematic representation of the treatment strategy in the Hepa1-6-induced HCC model. (j-k) Gross images of livers (scale bars, 5 mm), representative H&E staining (scale bars, 200 μm), and tumor burden (n = 6 mice) from the indicated Hepa1-6-induced HCC model. (l-m) Total flux curve and bioluminescence images of mice from the indicated Hepa1-6-induced HCC model for the indicated days (n = 6 mice); a, b, e, h, k, m P values were calculated using an unpaired t test (two-tailed). ..

Article Title: Targeting SPAK suppresses progression and averts an immune exhaustive microenvironment in hepatocellular carcinoma
Article Snippet: .. Fig. 8 Combined targeting SPAK and PD-1 showed enhanced efficacy in HCC. a Representative tissue region maps and expression analysis of SPAK levels from a spatial transcriptome dataset of ICI responders and non-responders (Mendeley Data: skrx2fz79n). b Representative abdominal MRI images, representative IHC staining and quantitative IHC analysis of SPAK levels performed on human HCC tissue obtained before and after treatment of ICI responders ( n = 7 patients) and non-responders ( n = 12 patients) (scale bars, 100 μm). c A schematic representation of the treatment strategy in the DEN/CCl4-induced HCC model. d , e Gross images of livers (scale bars, 5 mm), representative H&E staining (scale bars, 1000 μm), and tumor burden ( n = 5 mice) from the indicated DEN/CCl4-induced HCC model. f A schematic representation of the treatment strategy in the AKT/NRasV12 -induced HCC model. g , h Gross images of livers (scale bars, 5 mm), representative H&E staining (scale bars, 1000 μm), and tumor burden ( n = 5 mice) from the indicated AKT/NRasV12-induced HCC model. i A schematic representation of the treatment strategy in the Hepa1-6-induced HCC model. j , k Gross images of livers (scale bars, 5 mm), representative H&E staining (scale bars, 200 μm), and tumor burden ( n = 6 mice) from the indicated Hepa1-6-induced HCC model. l , m Total flux curve and bioluminescence images of mice from the indicated Hepa1-6-induced HCC model for the indicated days ( n = 6 mice); a , b , e , h , k , m P values were calculated using an unpaired t test (two-tailed). ..

Magnetic Resonance Imaging:

Article Title: Targeting SPAK suppresses progression and averts an immune exhaustive microenvironment in hepatocellular carcinoma.
Article Snippet: .. Combined targeting SPAK and PD-1 showed enhanced efficacy in HCC. (a) Representative tissue region maps and expression analysis of SPAK levels from a spatial transcriptome dataset of ICI responders and non-responders (Mendeley Data: skrx2fz79n). (b) Representative abdominal MRI images, representative IHC staining and quantitative IHC analysis of SPAK levels performed on human HCC tissue obtained before and after treatment of ICI responders (n = 7 patients) and non-responders (n = 12 patients) (scale bars, 100 μm). (c) A schematic representation of the treatment strategy in the DEN/CCl4-induced HCC model. (d-e) Gross images of livers (scale bars, 5 mm), representative H&E staining (scale bars, 1000 μm), and tumor burden (n = 5 mice) from the indicated DEN/CCl4-induced HCC model. (f) A schematic representation of the treatment strategy in the AKT/NRasV12-induced HCC model. (g-h) Gross images of livers (scale bars, 5 mm), representative H&E staining (scale bars, 1000 μm), and tumor burden (n = 5 mice) from the indicated AKT/NRasV12-induced HCC model. (i) A schematic representation of the treatment strategy in the Hepa1-6-induced HCC model. (j-k) Gross images of livers (scale bars, 5 mm), representative H&E staining (scale bars, 200 μm), and tumor burden (n = 6 mice) from the indicated Hepa1-6-induced HCC model. (l-m) Total flux curve and bioluminescence images of mice from the indicated Hepa1-6-induced HCC model for the indicated days (n = 6 mice); a, b, e, h, k, m P values were calculated using an unpaired t test (two-tailed). ..

Article Title: Targeting SPAK suppresses progression and averts an immune exhaustive microenvironment in hepatocellular carcinoma
Article Snippet: .. Fig. 8 Combined targeting SPAK and PD-1 showed enhanced efficacy in HCC. a Representative tissue region maps and expression analysis of SPAK levels from a spatial transcriptome dataset of ICI responders and non-responders (Mendeley Data: skrx2fz79n). b Representative abdominal MRI images, representative IHC staining and quantitative IHC analysis of SPAK levels performed on human HCC tissue obtained before and after treatment of ICI responders ( n = 7 patients) and non-responders ( n = 12 patients) (scale bars, 100 μm). c A schematic representation of the treatment strategy in the DEN/CCl4-induced HCC model. d , e Gross images of livers (scale bars, 5 mm), representative H&E staining (scale bars, 1000 μm), and tumor burden ( n = 5 mice) from the indicated DEN/CCl4-induced HCC model. f A schematic representation of the treatment strategy in the AKT/NRasV12 -induced HCC model. g , h Gross images of livers (scale bars, 5 mm), representative H&E staining (scale bars, 1000 μm), and tumor burden ( n = 5 mice) from the indicated AKT/NRasV12-induced HCC model. i A schematic representation of the treatment strategy in the Hepa1-6-induced HCC model. j , k Gross images of livers (scale bars, 5 mm), representative H&E staining (scale bars, 200 μm), and tumor burden ( n = 6 mice) from the indicated Hepa1-6-induced HCC model. l , m Total flux curve and bioluminescence images of mice from the indicated Hepa1-6-induced HCC model for the indicated days ( n = 6 mice); a , b , e , h , k , m P values were calculated using an unpaired t test (two-tailed). ..

Immunohistochemistry:

Article Title: Targeting SPAK suppresses progression and averts an immune exhaustive microenvironment in hepatocellular carcinoma.
Article Snippet: .. Combined targeting SPAK and PD-1 showed enhanced efficacy in HCC. (a) Representative tissue region maps and expression analysis of SPAK levels from a spatial transcriptome dataset of ICI responders and non-responders (Mendeley Data: skrx2fz79n). (b) Representative abdominal MRI images, representative IHC staining and quantitative IHC analysis of SPAK levels performed on human HCC tissue obtained before and after treatment of ICI responders (n = 7 patients) and non-responders (n = 12 patients) (scale bars, 100 μm). (c) A schematic representation of the treatment strategy in the DEN/CCl4-induced HCC model. (d-e) Gross images of livers (scale bars, 5 mm), representative H&E staining (scale bars, 1000 μm), and tumor burden (n = 5 mice) from the indicated DEN/CCl4-induced HCC model. (f) A schematic representation of the treatment strategy in the AKT/NRasV12-induced HCC model. (g-h) Gross images of livers (scale bars, 5 mm), representative H&E staining (scale bars, 1000 μm), and tumor burden (n = 5 mice) from the indicated AKT/NRasV12-induced HCC model. (i) A schematic representation of the treatment strategy in the Hepa1-6-induced HCC model. (j-k) Gross images of livers (scale bars, 5 mm), representative H&E staining (scale bars, 200 μm), and tumor burden (n = 6 mice) from the indicated Hepa1-6-induced HCC model. (l-m) Total flux curve and bioluminescence images of mice from the indicated Hepa1-6-induced HCC model for the indicated days (n = 6 mice); a, b, e, h, k, m P values were calculated using an unpaired t test (two-tailed). ..

Article Title: Targeting SPAK suppresses progression and averts an immune exhaustive microenvironment in hepatocellular carcinoma
Article Snippet: .. Fig. 8 Combined targeting SPAK and PD-1 showed enhanced efficacy in HCC. a Representative tissue region maps and expression analysis of SPAK levels from a spatial transcriptome dataset of ICI responders and non-responders (Mendeley Data: skrx2fz79n). b Representative abdominal MRI images, representative IHC staining and quantitative IHC analysis of SPAK levels performed on human HCC tissue obtained before and after treatment of ICI responders ( n = 7 patients) and non-responders ( n = 12 patients) (scale bars, 100 μm). c A schematic representation of the treatment strategy in the DEN/CCl4-induced HCC model. d , e Gross images of livers (scale bars, 5 mm), representative H&E staining (scale bars, 1000 μm), and tumor burden ( n = 5 mice) from the indicated DEN/CCl4-induced HCC model. f A schematic representation of the treatment strategy in the AKT/NRasV12 -induced HCC model. g , h Gross images of livers (scale bars, 5 mm), representative H&E staining (scale bars, 1000 μm), and tumor burden ( n = 5 mice) from the indicated AKT/NRasV12-induced HCC model. i A schematic representation of the treatment strategy in the Hepa1-6-induced HCC model. j , k Gross images of livers (scale bars, 5 mm), representative H&E staining (scale bars, 200 μm), and tumor burden ( n = 6 mice) from the indicated Hepa1-6-induced HCC model. l , m Total flux curve and bioluminescence images of mice from the indicated Hepa1-6-induced HCC model for the indicated days ( n = 6 mice); a , b , e , h , k , m P values were calculated using an unpaired t test (two-tailed). ..

Staining:

Article Title: Targeting SPAK suppresses progression and averts an immune exhaustive microenvironment in hepatocellular carcinoma.
Article Snippet: .. Combined targeting SPAK and PD-1 showed enhanced efficacy in HCC. (a) Representative tissue region maps and expression analysis of SPAK levels from a spatial transcriptome dataset of ICI responders and non-responders (Mendeley Data: skrx2fz79n). (b) Representative abdominal MRI images, representative IHC staining and quantitative IHC analysis of SPAK levels performed on human HCC tissue obtained before and after treatment of ICI responders (n = 7 patients) and non-responders (n = 12 patients) (scale bars, 100 μm). (c) A schematic representation of the treatment strategy in the DEN/CCl4-induced HCC model. (d-e) Gross images of livers (scale bars, 5 mm), representative H&E staining (scale bars, 1000 μm), and tumor burden (n = 5 mice) from the indicated DEN/CCl4-induced HCC model. (f) A schematic representation of the treatment strategy in the AKT/NRasV12-induced HCC model. (g-h) Gross images of livers (scale bars, 5 mm), representative H&E staining (scale bars, 1000 μm), and tumor burden (n = 5 mice) from the indicated AKT/NRasV12-induced HCC model. (i) A schematic representation of the treatment strategy in the Hepa1-6-induced HCC model. (j-k) Gross images of livers (scale bars, 5 mm), representative H&E staining (scale bars, 200 μm), and tumor burden (n = 6 mice) from the indicated Hepa1-6-induced HCC model. (l-m) Total flux curve and bioluminescence images of mice from the indicated Hepa1-6-induced HCC model for the indicated days (n = 6 mice); a, b, e, h, k, m P values were calculated using an unpaired t test (two-tailed). ..

Article Title: Targeting SPAK suppresses progression and averts an immune exhaustive microenvironment in hepatocellular carcinoma
Article Snippet: .. Fig. 8 Combined targeting SPAK and PD-1 showed enhanced efficacy in HCC. a Representative tissue region maps and expression analysis of SPAK levels from a spatial transcriptome dataset of ICI responders and non-responders (Mendeley Data: skrx2fz79n). b Representative abdominal MRI images, representative IHC staining and quantitative IHC analysis of SPAK levels performed on human HCC tissue obtained before and after treatment of ICI responders ( n = 7 patients) and non-responders ( n = 12 patients) (scale bars, 100 μm). c A schematic representation of the treatment strategy in the DEN/CCl4-induced HCC model. d , e Gross images of livers (scale bars, 5 mm), representative H&E staining (scale bars, 1000 μm), and tumor burden ( n = 5 mice) from the indicated DEN/CCl4-induced HCC model. f A schematic representation of the treatment strategy in the AKT/NRasV12 -induced HCC model. g , h Gross images of livers (scale bars, 5 mm), representative H&E staining (scale bars, 1000 μm), and tumor burden ( n = 5 mice) from the indicated AKT/NRasV12-induced HCC model. i A schematic representation of the treatment strategy in the Hepa1-6-induced HCC model. j , k Gross images of livers (scale bars, 5 mm), representative H&E staining (scale bars, 200 μm), and tumor burden ( n = 6 mice) from the indicated Hepa1-6-induced HCC model. l , m Total flux curve and bioluminescence images of mice from the indicated Hepa1-6-induced HCC model for the indicated days ( n = 6 mice); a , b , e , h , k , m P values were calculated using an unpaired t test (two-tailed). ..

Gene Expression:

Article Title: SPathDB: a comprehensive database of spatial pathway activity atlas
Article Snippet: .. Spatial transcriptome datasets of human and mouse were collected from the Gene Expression Omnibus (GEO) database , 10× Genomics ( https://www.10xgenomics.com/ ), Mendeley Data ( https://data.mendeley.com/ ) and CROST ( https://ngdc.cncb.ac.cn/crost/ ). ..



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