web-based tools (Broad Institute Inc)
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Broad Institute Inc
web-based tools
Web Based Tools, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/web-based+tool/web+based+tool/pmc07095488-200-32-37
Average 90 stars, based on 1 article reviews
Web Based Tools, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/web-based+tool/web+based+tool/pmc07095488-200-32-37
Average 90 stars, based on 1 article reviews
web-based tools - by Bioz Stars,
2026-10
90/100 stars
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Comparison:Article Title: Hemophilia A Inhibitor Subjects Show Unique PBMC Gene Expression Profiles That Include Up-Regulated Innate Immune Modulators Article Snippet: Hierarchical clustering of group-wise time-series DEGs and subsequent heatmap visualization were performed with web-based tools developed by the Broad Institute ( https://software.broadinstitute.org/GENE-E ). Article Title: Molecular profiling of stroma highlights stratifin as a novel biomarker of poor prognosis in pancreatic ductal adenocarcinoma Article Snippet: Gene set enrichment analysis was performed using the web-based tool developed by Broad Institute ( www.broad.mit.edu/gsea/ ). Article Title: Single-cell differential splicing analysis reveals high heterogeneity of liver tumor-infiltrating T cells Article Snippet: We performed gene set enrichment analysis[ , ] by the web-based tool provided by broad institute ( http://software.broadinstitute.org/ ). Article Title: Single-cell differential splicing analysis reveals high heterogeneity of liver tumor-infiltrating T cells Article Snippet: We performed gene set enrichment analysis , using a web-based tool provided by broad institute ( http://www.gsea-msigdb.org/gsea/msigdb/annotate.jsp ). Article Title: Blocking Wnt signaling by SFRP-like molecules inhibits in vivo cell proliferation and tumor growth in cells carrying active ?-catenin Article Snippet: GSEA was performed by using the web-based tool developed at the Broad Institute ( Subramanian et al. , 2005 ) as previously described ( Coulouarn et al. , 2009 ). Article Title: p63 + Krt5 + distal airway stem cells are essential for lung regeneration Article Snippet: For the comparison between gene expression profiles of in situ alveoli and tracheal epithelium with those of in vitro differentiated TBSCs and DASCs (see ), gene set enrichment analyses were performed using web-based tools developed by the Broad Institute , . Article Title: De novo HAPLN1 expression hallmarks Wnt-induced stem cell and fibrogenic networks leading to aggressive human hepatocellular carcinomas Article Snippet: Gene set enrichment analysis (GSEA) was performed with the web-based tool developed at the Broad Institute [ ]. Article Title: An EZH2‐dependent transcriptional complex promotes aberrant epithelial remodelling after injury Article Snippet: Gene set enrichment analysis was performed on a pre‐ranked gene list according to log 2 fold change and compared with the Board Institute Molecular Database collection of chemical and genetic perturbations (C2 CGP, 3297 gene sets) and oncogenic signatures (C6, 189 gene sets) using the web‐based tool available from the Broad Institute (Mootha et al , ; Subramanian et al , ). Gene Expression:Article Title: Hemophilia A Inhibitor Subjects Show Unique PBMC Gene Expression Profiles That Include Up-Regulated Innate Immune Modulators Article Snippet: Hierarchical clustering of group-wise time-series DEGs and subsequent heatmap visualization were performed with web-based tools developed by the Broad Institute ( https://software.broadinstitute.org/GENE-E ). Article Title: Molecular profiling of stroma highlights stratifin as a novel biomarker of poor prognosis in pancreatic ductal adenocarcinoma Article Snippet: Gene set enrichment analysis was performed using the web-based tool developed by Broad Institute ( www.broad.mit.edu/gsea/ ). Article Title: Single-cell differential splicing analysis reveals high heterogeneity of liver tumor-infiltrating T cells Article Snippet: We performed gene set enrichment analysis[ , ] by the web-based tool provided by broad institute ( http://software.broadinstitute.org/ ). Article Title: Single-cell differential splicing analysis reveals high heterogeneity of liver tumor-infiltrating T cells Article Snippet: We performed gene set enrichment analysis , using a web-based tool provided by broad institute ( http://www.gsea-msigdb.org/gsea/msigdb/annotate.jsp ). Article Title: Blocking Wnt signaling by SFRP-like molecules inhibits in vivo cell proliferation and tumor growth in cells carrying active ?-catenin Article Snippet: GSEA was performed by using the web-based tool developed at the Broad Institute ( Subramanian et al. , 2005 ) as previously described ( Coulouarn et al. , 2009 ). Article Title: p63 + Krt5 + distal airway stem cells are essential for lung regeneration Article Snippet: For the comparison between gene expression profiles of in situ alveoli and tracheal epithelium with those of in vitro differentiated TBSCs and DASCs (see ), gene set enrichment analyses were performed using web-based tools developed by the Broad Institute , . Article Title: De novo HAPLN1 expression hallmarks Wnt-induced stem cell and fibrogenic networks leading to aggressive human hepatocellular carcinomas Article Snippet: Gene set enrichment analysis (GSEA) was performed with the web-based tool developed at the Broad Institute [ ]. Article Title: An EZH2‐dependent transcriptional complex promotes aberrant epithelial remodelling after injury Article Snippet: Gene set enrichment analysis was performed on a pre‐ranked gene list according to log 2 fold change and compared with the Board Institute Molecular Database collection of chemical and genetic perturbations (C2 CGP, 3297 gene sets) and oncogenic signatures (C6, 189 gene sets) using the web‐based tool available from the Broad Institute (Mootha et al , ; Subramanian et al , ). In Situ:Article Title: Hemophilia A Inhibitor Subjects Show Unique PBMC Gene Expression Profiles That Include Up-Regulated Innate Immune Modulators Article Snippet: Hierarchical clustering of group-wise time-series DEGs and subsequent heatmap visualization were performed with web-based tools developed by the Broad Institute ( https://software.broadinstitute.org/GENE-E ). Article Title: Molecular profiling of stroma highlights stratifin as a novel biomarker of poor prognosis in pancreatic ductal adenocarcinoma Article Snippet: Gene set enrichment analysis was performed using the web-based tool developed by Broad Institute ( www.broad.mit.edu/gsea/ ). Article Title: Single-cell differential splicing analysis reveals high heterogeneity of liver tumor-infiltrating T cells Article Snippet: We performed gene set enrichment analysis[ , ] by the web-based tool provided by broad institute ( http://software.broadinstitute.org/ ). Article Title: Single-cell differential splicing analysis reveals high heterogeneity of liver tumor-infiltrating T cells Article Snippet: We performed gene set enrichment analysis , using a web-based tool provided by broad institute ( http://www.gsea-msigdb.org/gsea/msigdb/annotate.jsp ). Article Title: Blocking Wnt signaling by SFRP-like molecules inhibits in vivo cell proliferation and tumor growth in cells carrying active ?-catenin Article Snippet: GSEA was performed by using the web-based tool developed at the Broad Institute ( Subramanian et al. , 2005 ) as previously described ( Coulouarn et al. , 2009 ). Article Title: p63 + Krt5 + distal airway stem cells are essential for lung regeneration Article Snippet: For the comparison between gene expression profiles of in situ alveoli and tracheal epithelium with those of in vitro differentiated TBSCs and DASCs (see ), gene set enrichment analyses were performed using web-based tools developed by the Broad Institute , . Article Title: De novo HAPLN1 expression hallmarks Wnt-induced stem cell and fibrogenic networks leading to aggressive human hepatocellular carcinomas Article Snippet: Gene set enrichment analysis (GSEA) was performed with the web-based tool developed at the Broad Institute [ ]. Article Title: An EZH2‐dependent transcriptional complex promotes aberrant epithelial remodelling after injury Article Snippet: Gene set enrichment analysis was performed on a pre‐ranked gene list according to log 2 fold change and compared with the Board Institute Molecular Database collection of chemical and genetic perturbations (C2 CGP, 3297 gene sets) and oncogenic signatures (C6, 189 gene sets) using the web‐based tool available from the Broad Institute (Mootha et al , ; Subramanian et al , ). In Vitro:Article Title: Hemophilia A Inhibitor Subjects Show Unique PBMC Gene Expression Profiles That Include Up-Regulated Innate Immune Modulators Article Snippet: Hierarchical clustering of group-wise time-series DEGs and subsequent heatmap visualization were performed with web-based tools developed by the Broad Institute ( https://software.broadinstitute.org/GENE-E ). Article Title: Molecular profiling of stroma highlights stratifin as a novel biomarker of poor prognosis in pancreatic ductal adenocarcinoma Article Snippet: Gene set enrichment analysis was performed using the web-based tool developed by Broad Institute ( www.broad.mit.edu/gsea/ ). Article Title: Single-cell differential splicing analysis reveals high heterogeneity of liver tumor-infiltrating T cells Article Snippet: We performed gene set enrichment analysis[ , ] by the web-based tool provided by broad institute ( http://software.broadinstitute.org/ ). Article Title: Single-cell differential splicing analysis reveals high heterogeneity of liver tumor-infiltrating T cells Article Snippet: We performed gene set enrichment analysis , using a web-based tool provided by broad institute ( http://www.gsea-msigdb.org/gsea/msigdb/annotate.jsp ). Article Title: Blocking Wnt signaling by SFRP-like molecules inhibits in vivo cell proliferation and tumor growth in cells carrying active ?-catenin Article Snippet: GSEA was performed by using the web-based tool developed at the Broad Institute ( Subramanian et al. , 2005 ) as previously described ( Coulouarn et al. , 2009 ). Article Title: p63 + Krt5 + distal airway stem cells are essential for lung regeneration Article Snippet: For the comparison between gene expression profiles of in situ alveoli and tracheal epithelium with those of in vitro differentiated TBSCs and DASCs (see ), gene set enrichment analyses were performed using web-based tools developed by the Broad Institute , . Article Title: De novo HAPLN1 expression hallmarks Wnt-induced stem cell and fibrogenic networks leading to aggressive human hepatocellular carcinomas Article Snippet: Gene set enrichment analysis (GSEA) was performed with the web-based tool developed at the Broad Institute [ ]. Article Title: An EZH2‐dependent transcriptional complex promotes aberrant epithelial remodelling after injury Article Snippet: Gene set enrichment analysis was performed on a pre‐ranked gene list according to log 2 fold change and compared with the Board Institute Molecular Database collection of chemical and genetic perturbations (C2 CGP, 3297 gene sets) and oncogenic signatures (C6, 189 gene sets) using the web‐based tool available from the Broad Institute (Mootha et al , ; Subramanian et al , ). |