3d watershed segmentation function (MathWorks Inc)

MathWorks Inc is a verified supplier

About

News

Press Release

Team

Advisors

Partners

Contact

Bioz Stars

Bioz vStars

Buy from Supplier

Structured Review

MathWorks Inc 3d watershed segmentation function
3d Watershed Segmentation Function, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/watershed+function/pm40615398-471-1-0
Average 90 stars, based on 1 article reviews

3d watershed segmentation function - by Bioz Stars, 2026-09

90/100 stars

Images

other:

Article Title: Blood-Brain Barrier (BBB) Disruption Using a Diagnostic Ultrasound Scanner and Definity(R) in Mice
Article Snippet: By inverting the gray-scale values in the MR image, applying a 3-D watershed algorithm (The MathWorks, Inc., Natick, MA), and ignoring any voxels originally below the background level, the contrast-enhanced volumes associated with BBB opening were segmented.

Article Title: A multi-tiered mechanical mechanism shapes the early neural plate.
Article Snippet: Matlab’s 3D watershed segmentation function was applied after preprocessing (3DCLAHE,windowsize = 10 followedbyGaussian smoothing, σ = 2).

Article Title: ASB Clinical Biomechanics Award Paper 2010: Virtual Pre-Operative Reconstruction Planning for Comminuted Articular Fractures
Article Snippet: The image segmentation algorithm used a 3D watershed transform ( Meyer, 1994 ), implemented in the MATLAB image processing toolbox (MathWorks, Inc; Natick, MA, USA).

Clinical Proteomics:

Article Title: Veklury® (remdesivir) formulations inhibit initial membrane-coupled events of SARS-CoV-2 infection due to their sulfobutylether-β-cyclodextrin content.
Article Snippet: .. During image analysis, pixels corresponding to the plasma membrane and the intracellular space were identified in F66 Z-stack images using a custom-written 3D watershed algorithm in MATLAB, and the average fluorescence intensity values emitted by Alexa Fluor 488 were calculated using data of intracellular pixels for each cell. ..

Membrane:

Article Title: Veklury® (remdesivir) formulations inhibit initial membrane-coupled events of SARS-CoV-2 infection due to their sulfobutylether-β-cyclodextrin content.
Article Snippet: .. During image analysis, pixels corresponding to the plasma membrane and the intracellular space were identified in F66 Z-stack images using a custom-written 3D watershed algorithm in MATLAB, and the average fluorescence intensity values emitted by Alexa Fluor 488 were calculated using data of intracellular pixels for each cell. ..

Article Title: Veklury® (remdesivir) formulations inhibit initial membrane-coupled events of SARS-CoV-2 infection due to their sulfobutylether-β-cyclodextrin content.
Article Snippet: HEK/ACE2 + TMPRSS2 or Calu-3 cells treated with 1- or 5-mM MβCD, HPβCD, SBECD, Veklury® P (powder) or Veklury® S (solution), 100-μM remdesivir (REM) or 200-μM cholesterol (CHOL) for 1 h were subsequently incubated for 4 h in the presence of WT or Delta SARS-CoV-2 spike trimers conjugated with Alexa Fluor 488 and labelled with N-[3-(40-dihexylamino3-hydroxy-flavonyl-6-oxy)-propyl]N,N-dimethyl-N-(3-sulfopropyl)-ammonium inner salt (F66). (a) A representative orthogonal view of a confocal Z-stack of untreated control HEK/ACE2 + TMPRSS2 cells demonstrates notable internalization of trimers. (b) During image analysis, pixels corresponding to plasma membrane and intracellular pixels were identified in F66 Z-stack images. .. Markers were placed inside cells (green circles in the grayscale orthogonal view), and a MATLAB implementation of the 3D watershed algorithm identified the intracellular space of cells and their membrane (coloured regions and red lines in the orthogonal view in the middle, respectively, and their overlay image displayed on the right). ..

Fluorescence:

Article Title: Veklury® (remdesivir) formulations inhibit initial membrane-coupled events of SARS-CoV-2 infection due to their sulfobutylether-β-cyclodextrin content.
Article Snippet: .. During image analysis, pixels corresponding to the plasma membrane and the intracellular space were identified in F66 Z-stack images using a custom-written 3D watershed algorithm in MATLAB, and the average fluorescence intensity values emitted by Alexa Fluor 488 were calculated using data of intracellular pixels for each cell. ..

Review