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visual omp software (DNA Software Inc)

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DNA Software Inc visual omp software
Visual Omp Software, supplied by DNA Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/visual+omp/visual+omp+software/us11674171-508-7-12
Average 90 stars, based on 1 article reviews

visual omp software - by Bioz Stars, 2026-09

90/100 stars

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Article Title: Multiplex target detection assay
Article Snippet: .. These types of interactions were predicted using Visual OMP software version 7.5.1.0 (DNA Software Inc., Ann Arbor, Mich. USA) and the probes were modified by changing the sequence of the probe to reduce or eliminate these interactions. ..

Modification:

Sequencing:

other:

Article Title: Genomic analysis of high copy-number sequences for the targeted detection of Listeria species using a flow-through surveillance system
Article Snippet: Ribosomal RNA (rRNA) was chosen as the targeted region to enable a reliable detection of Listeria species at low cell concentrations. a Simulated folding was performed to assess RNA accessibility in the identified regions (circles) by calculating the equilibrium target unfolding (blue symbols) and the target complexity (green symbols) calculations, as determined using Visual-OMPTM software package (DNA Software, Inc., Ann Arbor, MI). b To further assess the oligonucleotide specificity for cross hybridization with non-targeted bacterial species from soil, water, and plant surfaces, the in silico mismatch was examined by comparing Listeria monocytogenes sequences with strains belonging to Bacillus, Citrobacter, Escherichia , Lactobacillus , Pantoea , Pectobacterium, Planococcus, Proteus, Pseudomonas , and Salmonella genera The in silico analyses were performed with algorithms using the nearest-neighbor model coupled with multi-state equilibrium model for conducting simulated folding to assess RNA accessibility in the identified genomic regions targeted for detection (Fig. a).

Article Title: Methods for performing multiplexed PCR
Article Snippet: For example, Visual OMPTM software (DNA Software, Inc., Ann Arbor, Mich.) enables one to determine melting temperatures of nucleic acid duplexes under various reaction conditions.

Article Title: Genomic analysis of high copy-number sequences for the targeted detection of Listeria species using a flow-through surveillance system
Article Snippet: Simulated folding of the model sequence was performed to find regions of high RNA accessibility with unfolding energy < 20 kcal/mol using Visual-OMPTM software package (DNA Software, Inc., Ann Arbor, MI).

Article Title: Methods for performing multiplexed real-time PCR
Article Snippet: For example, Visual OMPTM software (DNA Software, Inc., Ann Arbor, Mich.) enables one to determine melting temperatures of nucleic acid duplexes under various reaction conditions.

Article Title: Rapid Pyrazinamide Drug Susceptibility Testing using a Closed-Tube PCR Assay of the Entire pncA gene
Article Snippet: During development the probes Tm and binding were checked utilizing Visual-OMP software (DNA Software Inc., Ann Arbor, MI, USA).

Article Title: Rapid Pyrazinamide Drug Susceptibility Testing using a Closed-Tube PCR Assay of the Entire pncA gene
Article Snippet: The primers and probes were designed using Visual-OMP software (DNA Software Inc., Ann Arbor, MI, USA).