oligonucleotide modeling platform visual omp (DNA Software Inc)

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DNA Software Inc oligonucleotide modeling platform visual omp
Oligonucleotide Modeling Platform Visual Omp, supplied by DNA Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/visual+omp+platform/oligonucleotide+modeling+platform+omp/pmc05661860-72-27-34
Average 90 stars, based on 1 article reviews

oligonucleotide modeling platform visual omp - by Bioz Stars, 2026-11

90/100 stars

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Hybridization:

Article Title: Effects of Template Sequence and Secondary Structure on DNA-Templated Reactivity
Article Snippet: .. The Oligonucleotide Modeling Platform (OMP, DNA Software Inc.) 8 , 9 was also used to model the hybridization of reagents to these templates ( ) under the experimental conditions (100 nM template, 150 nM reagent, 1 M NaCl, 25 °C). ..

Article Title: Computational prediction of the melting temperature of a DNA biosensor to detect Mycobacterium tuberculosis
Article Snippet: Biosensors are DNA probes that form a stem-and-loop structure.. When the biosensor binds to the complementary nucleic acid target, it undergoes a conformational transition that enables them to fluoresce brightly.. Thermodynamic properties such as melting temperature (Tm) and free energy (DG) can to predict computationally the hybridization.

Software:

Article Title: Computational Biosensors: Molecules, Algorithms, and Detection Platforms
Article Snippet: .. Thermodynamics based methods developed by SantaLucia and colleagues have been implemented in two comparable software packages: the freely available HyTher web server and the commercial Oligonucleotide Modeling Platform (OMP) sold by DNA Software, Inc. Our initial prediction pipeline used HyTher, but ultimately we used OMP to develop a pipeline for deoxyribozyme gate and computational well design [ ]. ..

Article Title: An array-based melt curve analysis method for the identification and classification of closely related pathogen strains.
Article Snippet: .. Subsequently, extensive thermodynamic simulations were conducted with Oligonucleotide Modeling Platform (OMP) Developers Edition (DE) software package (DNA Software Inc, Ann Arbor, MI) [28], to identify thermodynamically optimal primer pair candidates (see Supplementary Data Section Table 1A and 1B for key parameters). ..

Generated:

Article Title: An In Vitro Translation, Selection, and Amplification System for Peptide Nucleic Acids
Article Snippet: .. 10,000 (x’y’t)8 library members or 10,000 N40 library members were randomly generated and their secondary structure folding energies were calculated as DNA using the Oligonucleotide Modeling Platform (OMP; DNA Software, Inc.). ..

other:

Article Title: An array-based melt curve analysis method for the identification and classification of closely related pathogen strains
Article Snippet: Subsequently, extensive thermodynamic simulations were conducted with Oligonucleotide Modeling Platform (OMP) Developers Edition (DE) software package (DNA Software Inc, Ann Arbor, MI) [ ], to identify thermodynamically optimal primer pair candidates (see for key parameters).

Review