3d visualization (Accelrys)

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Accelrys 3d visualization
3d Visualization, supplied by Accelrys, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/visual+3d/3d+visualization/pm41878317-68-3-9
Average 86 stars, based on 1 article reviews

3d visualization - by Bioz Stars, 2026-09

86/100 stars

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Article Title: Nano-Cilostazol Mitigates Cisplatin-Induced Nephrotoxicity in Rats via Modulation of Oxidative Stress, Apoptosis, Pyroptosis, and miRNA-155 Signaling
Article Snippet: C shows a 3D visualization of the interaction between Cilostazol and the ASC protein using Biovia 2020; the figure shows a binding interaction inside the red alpha helix by targeting ARG, SER and GLY amino acids. .. D shows a 2D visualization of the interaction between Cilostazol and the ASC protein using Biovia 2020; the figure shows a binding interaction inside the pocket by targeting ARG345, TYR259, SER109 and GLY110 amino acids. .. E shows a 3D visualization of the interaction between Cilostazol and the GSDMD protein using Biovia 2020; the figure shows a binding interaction inside the red alpha helix and blue B-sheets by targeting PRO, SER and GL Yamino acids.

Article Title: Nano-Cilostazol Mitigates Cisplatin-Induced Nephrotoxicity in Rats via Modulation of Oxidative Stress, Apoptosis, Pyroptosis, and miRNA-155 Signaling
Article Snippet: C depicts a3D visualization of the interaction between Cilostazol and the JAK2 protein using Biovia 2020; the figure shows a binding interaction between red alpha helices and cyan structural regions, with the ligand engaging with SER, LEU, and ASP amino acids within the kinase binding pocket. .. D shows a 2D visualization of the interaction between Cilostazol and the JAK2 protein using Biovia 2020; the figure shows a binding interaction inside the pocket featuring conventional hydrogen bonding with SER, a carbon–hydrogen bond with GLY, pi–anion interaction with ASP, and extensive hydrophobic contacts with LEU, VAL, and ALA amino acids. .. E depicts a 3D visualization of the interaction between Cilostazol and the NLRP3 protein using Biovia 2020;the figure shows the binding interaction within a deep pocket surrounded by red alpha helices and cyan beta sheets, targeting ARG, ILE, TYR, and PHE amino acids.

Article Title: Nano-Cilostazol Mitigates Cisplatin-Induced Nephrotoxicity in Rats via Modulation of Oxidative Stress, Apoptosis, Pyroptosis, and miRNA-155 Signaling
Article Snippet: Figure 5B shows a 2D visualization of the interaction between Cilostazol and the BAX protein using Biovia 2020; the figure shows binding interactions within the pocket by https://doi.org/10.3390/antiox15030315 targeting GLN32, SER60, and LYS57 amino acids. .. Figure 5C shows a 3D visualization of the interaction between Cilostazol and the ASC protein using Biovia 2020; the figure shows a binding interaction inside the red alpha helix by targeting ARG, SER and GLY amino acids. .. Figure 5D shows a 2D visualization of the interaction between Cilostazol and the ASC protein using Biovia 2020; the figure shows a binding interaction inside the pocket by targeting ARG345, TYR259, SER109 and GLY110 amino acids.

Article Title: Taurine suppresses Aβ aggregation and attenuates Alzheimer's disease pathologies in 5XFAD mice and patient-derived cerebral organoids.
Article Snippet: .. The visualization tools within Biovia Discovery Studio 2024 were used to analyze and visualize the 2D and 3D receptor-ligand interactions, including binding poses and specific molecular contacts. .. Molecular dynamics simulations were carried out using BIOVIA Discovery Studio Client 2024.

Article Title: Nano-Cilostazol Mitigates Cisplatin-Induced Nephrotoxicity in Rats via Modulation of Oxidative Stress, Apoptosis, Pyroptosis, and miRNA-155 Signaling
Article Snippet: F shows a 2D visualization of the interaction between Cilostazol and the GSDMD protein using Biovia 2020; the figure shows a binding interaction inside the red alpha helix and blue B-sheets by targeting THR447, PRO 25 and 451, SER448 and GLY432amino acids. .. G shows a 3D visualization of interaction between Cilostazol and the KIM-1 protein using Biovia 2020;the figure shows a binding interaction within structural elements including cyan helical regions, with the ligand positioned in the binding pocket interacting with GLN, THR, MET, PHE, ARG, and PRO amino acids. .. H shows a 2D visualization of the interaction between Cilostazol and the KIM-1 protein using Biovia 2020; the figure shows a binding interaction inside the pocket through hydrogen bonding with THR and GLN residues, pi–pi T-shaped interaction with PHE, and multiple hydrophobic contacts with MET, ARG, and PRO amino acids.

other:

Article Title: Targeting ORMDL2 in glioblastoma through integrated landscape of high-throughput sequencing and pharmacogenomic analysis
Article Snippet: Three- (3D) and two-dimensional (2D) visualization of the docked structure were then done using Biovia Discovery Studio 2025 - .

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