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visium platform  (10X Genomics)

 
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    Structured Review

    10X Genomics visium platform
    Visium Platform, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/visium+image+alignment+function/visium+platform/pmc10690172-2-19-17
    Average 90 stars, based on 1 article reviews
    visium platform - by Bioz Stars, 2026-11
    90/100 stars

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    Related Articles

    Profiling:

    Article Title: HISSTA: a human in situ single-cell transcriptome atlas
    Article Snippet: .. For example, the Visium platform from 10x Genomics offers transcriptome profiling at 50 μm resolution ( Ståhl et al. 2016 ) and, more recently, 2 μm resolution with its HD service. ..

    Spatial Transcriptomics:

    Article Title: Single-cell transcriptome sequencing reveals new epithelial-stromal associated mesenchymal-like subsets in recurrent gliomas.
    Article Snippet: .. Spatial transcriptomics data were generated using the 10x Genomics Visium platform. ..

    Article Title: CellNEST reveals cell-cell relay networks using attention mechanisms on spatial transcriptomics.
    Article Snippet: .. Spatial transcriptomics using the Visium platform was carried out according to manufacturer’s instructions (10x Genomics, part no. 1000200, protocol CG000160 RevB, CG000239 RevD). .. Sequencing was performed on the Illumina NovaSeq 6000 platform with paired-end reads according to 10x Genomics specifications.

    Article Title: Primed Mesenchymal Stem Cells by IFN-γ and IL-1β Ameliorate Acute Respiratory Distress Syndrome through Enhancing Homing Effect and Immunomodulation.
    Article Snippet: Acute Respiratory Distress Syndrome (ARDS) often result from infections, trauma, or other systemic inflammatory responses.. These conditions, severe and life-threatening, are characterized by extensive lung inflammation leading to respiratory failure (Wick et al., 2024).. They are marked by rapid inflammation onset and increased permeability of the alveolar-capillary barrier, which causes respiratory dysfunction (Vichare and Janjic, 2022; Lim et al., 2023).

    Generated:

    Article Title: Single-cell transcriptome sequencing reveals new epithelial-stromal associated mesenchymal-like subsets in recurrent gliomas.
    Article Snippet: .. Spatial transcriptomics data were generated using the 10x Genomics Visium platform. ..

    other:

    Article Title: Single-cell sequencing and spatial transcriptomics reveal FAS+ T cell and autophagy-related signatures predicting chemoimmunotherapy response in diffuse large B-cell lymphoma patients.
    Article Snippet: 1Clinical Pharmacology Research Center, Beijing Key Laboratory of Clinical PK & PD Investigation for Innovative Drugs, NMPA Key Laboratory for Clinical Research and Evaluation of Drug, State Key Laboratory of Complex Severe and Rare Diseases, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100730, China 2Department of Medical Oncology, Beijing Key Laboratory of Clinical Study on Anticancer Molecular Targeted Drugs, National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100021, China

    Next-Generation Sequencing:

    Article Title: SpaceBF: Spatial coexpression analysis using Bayesian Fused approaches in spatial omics datasets
    Article Snippet: .. For example, next-generation sequencing (NGS)-based ST platform Visium (from 10X Genomics) [ ] offers transcriptome-wide gene-expression profiling (throughput ~ 20, 000) at a 55 μm spot-level resolution. .. MALDI MSI-based platforms (from Bruker Daltonics [ ] and others) offer profiling different types of molecules, such as peptides, lipids, nucleotides, proteins, metabolites, and N-glycans, (throughput ~ 50 − 1000) at 10 μm spot-level resolution.

    Transcriptome Wide Gene Expression:

    Article Title: SpaceBF: Spatial coexpression analysis using Bayesian Fused approaches in spatial omics datasets
    Article Snippet: .. For example, next-generation sequencing (NGS)-based ST platform Visium (from 10X Genomics) [ ] offers transcriptome-wide gene-expression profiling (throughput ~ 20, 000) at a 55 μm spot-level resolution. .. MALDI MSI-based platforms (from Bruker Daltonics [ ] and others) offer profiling different types of molecules, such as peptides, lipids, nucleotides, proteins, metabolites, and N-glycans, (throughput ~ 50 − 1000) at 10 μm spot-level resolution.



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