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visium platform  (10X Genomics)

 
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    10X Genomics visium platform
    Analysis of four anterior and posterior sections of mouse brain tissue on sagittal plane with MUSTANG (A) Paired anterior-posterior slices placed on <t>the</t> <t>10X</t> <t>Visium</t> gene expression slides. (B) Spot-based spatial pie charts of MUSTANG-inferred brain region proportions for all four mouse brain tissue sections. (C) Left: MUSTANG-inferred cell numbers for brain region 5 matching the spatial pattern of the cortex anatomical brain region. Middle: spot-level expression visualization of the known cortex layer marker gene Tbr1. Right: the ISH images of this marker gene from the Allen Brain Atlas. (D) Left: MUSTANG-inferred cell numbers for brain region 3 matching the spatial pattern of the hypothalamus anatomical brain region. Middle: spot-level expression visualization of the known hypothalamus layer marker gene Zcchc12. Right: the ISH images of this marker gene from the Allen Brain Atlas.
    Visium Platform, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/visium+image+alignment+function/pmc11117058-103-27-25?v=10X+Genomics
    Average 86 stars, based on 1 article reviews
    visium platform - by Bioz Stars, 2026-08
    86/100 stars

    Images

    1) Product Images from "MUSTANG: Multi-sample spatial transcriptomics data analysis with cross-sample transcriptional similarity guidance"

    Article Title: MUSTANG: Multi-sample spatial transcriptomics data analysis with cross-sample transcriptional similarity guidance

    Journal: Patterns

    doi: 10.1016/j.patter.2024.100986

    Analysis of four anterior and posterior sections of mouse brain tissue on sagittal plane with MUSTANG (A) Paired anterior-posterior slices placed on the 10X Visium gene expression slides. (B) Spot-based spatial pie charts of MUSTANG-inferred brain region proportions for all four mouse brain tissue sections. (C) Left: MUSTANG-inferred cell numbers for brain region 5 matching the spatial pattern of the cortex anatomical brain region. Middle: spot-level expression visualization of the known cortex layer marker gene Tbr1. Right: the ISH images of this marker gene from the Allen Brain Atlas. (D) Left: MUSTANG-inferred cell numbers for brain region 3 matching the spatial pattern of the hypothalamus anatomical brain region. Middle: spot-level expression visualization of the known hypothalamus layer marker gene Zcchc12. Right: the ISH images of this marker gene from the Allen Brain Atlas.
    Figure Legend Snippet: Analysis of four anterior and posterior sections of mouse brain tissue on sagittal plane with MUSTANG (A) Paired anterior-posterior slices placed on the 10X Visium gene expression slides. (B) Spot-based spatial pie charts of MUSTANG-inferred brain region proportions for all four mouse brain tissue sections. (C) Left: MUSTANG-inferred cell numbers for brain region 5 matching the spatial pattern of the cortex anatomical brain region. Middle: spot-level expression visualization of the known cortex layer marker gene Tbr1. Right: the ISH images of this marker gene from the Allen Brain Atlas. (D) Left: MUSTANG-inferred cell numbers for brain region 3 matching the spatial pattern of the hypothalamus anatomical brain region. Middle: spot-level expression visualization of the known hypothalamus layer marker gene Zcchc12. Right: the ISH images of this marker gene from the Allen Brain Atlas.

    Techniques Used: Expressing, Marker



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