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Spatial Transcriptomics Inc visium spatial
Visium Spatial, supplied by Spatial Transcriptomics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/visium+image+alignment+function/data+spatial+transcriptomics+visium/pmc12649904-80-0-1
Average 86 stars, based on 1 article reviews
visium spatial - by Bioz Stars, 2026-09
86/100 stars

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Spatial Transcriptomics:

Article Title: Phase Separation Competent TIA1 Couples Glycolytic Shutdown to CD8 + T-Cell Activation and Shapes the Efficacy of Intravesical BCG in Bladder Cancer
Article Snippet: .. Visium spatial-transcriptomics data (GEO GSE171351 ) were processed in Seurat v4; TIA1, EPCAM, and CD8A spot-level expression was visualized in ggplot2 (RStudio, Version: 2025.09.2+418). ..

Article Title: A technical comparison of spatial transcriptomics platforms across six cancer types.
Article Snippet: .. To systematically evaluate the technical performance of current spatial transcriptomics technologies, we profiled six FFPE tumor types using five commercially available platforms: Visium v1, Visium v2 (CytAssist), VisiumHD, Xenium, and CosMx. ..


Article Title: Integrative transcriptomic analysis reveals microglial metabolic-inflammatory crosstalk of HK2–HSPA5–TNF axis after intracerebral hemorrhage
Article Snippet: .. Spatial transcriptomics analysis leveraged preprocessed Visium data from lesional (hemorrhage-affected) and contralateral hemispheres across nine timepoints (Naive to D28). ..

Article Title: Ghent Pathology 2025. 15th Joint Meeting of the BDIAP and The Pathological Society joint with the Belgian Society of Pathology, 24-26 June 2025.
Article Snippet: .. Additionally, we assessed SEQUOIA’s ability to infer spatially resolved expression by comparing predicted values with ground truth obtained from Visium spatial transcriptomics data. ..

Article Title: CEBPB expression in tumor cells drives immune evasion in colorectal cancer via CTLA4 upregulation in T cells
Article Snippet: .. For comparative analyses, we also used the publicly available human colorectal cancer scRNA-seq dataset (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE178341) and a Visium spatial-transcriptomics dataset from Zenodo (https://doi.org/10.5281/zenodo.7551712). .. HJY, DY, JDL, HS, and SMK performed in vitro and in vivo experiments, CHP, KK, D ow nloaded from https://spj.science.org on February 04, 2026 32 and HS analyzed scRNA-seq data, HRS analyzed whole-exome sequencing, immunohistochemistry, and public data, CP analyzed public data, MJK, JWP, SBR, SYJ, KJP, and TYK provided human tumor tissue and analyzed clinical data, YL analyzed Lunit SCOPE IO data, JK supervised scRNA-seq analysis, JKW supervised public data and pathological analysis, and SWH provided concept of the study and supervised in vitro and in vivo experiments.

Article Title: Hist2Cell: Deciphering fine-grained cellular architectures from histology images.
Article Snippet: .. 39 We selected slices that included both Visium Spatial Transcriptomics (ST) data and 20× magnification H&E images. ..

Article Title: Single Cell and Spatial Transcriptomics Define a Proinflammatory and Profibrotic Niche After Kidney Injury.
Article Snippet: .. Spatial Transcriptomics VisiumData Processing: Mouse kidney samples stored in a frozen state were embedded withOCT compound and stored at −80 °C. .. For the preparation of sections for Visium Spatial Transcriptomics sequencing, samples were equilibrated at−18 °C and a 10 μmthick section was cut onto the active sequencing area (6 mm x 6 mm) of a spatial barcoded slide.

Expressing:

Article Title: Phase Separation Competent TIA1 Couples Glycolytic Shutdown to CD8 + T-Cell Activation and Shapes the Efficacy of Intravesical BCG in Bladder Cancer
Article Snippet: .. Visium spatial-transcriptomics data (GEO GSE171351 ) were processed in Seurat v4; TIA1, EPCAM, and CD8A spot-level expression was visualized in ggplot2 (RStudio, Version: 2025.09.2+418). ..

Article Title: Ghent Pathology 2025. 15th Joint Meeting of the BDIAP and The Pathological Society joint with the Belgian Society of Pathology, 24-26 June 2025.
Article Snippet: .. Additionally, we assessed SEQUOIA’s ability to infer spatially resolved expression by comparing predicted values with ground truth obtained from Visium spatial transcriptomics data. ..

Formalin-fixed Paraffin-Embedded:

Article Title: A technical comparison of spatial transcriptomics platforms across six cancer types.
Article Snippet: .. To systematically evaluate the technical performance of current spatial transcriptomics technologies, we profiled six FFPE tumor types using five commercially available platforms: Visium v1, Visium v2 (CytAssist), VisiumHD, Xenium, and CosMx. ..



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