Review



visium data analysis  (Spatial Transcriptomics Inc)

 
  • Logo
  • About
  • News
  • Press Release
  • Team
  • Advisors
  • Partners
  • Contact
  • Bioz Stars
  • Bioz vStars
    • 90
      Buy from Supplier

    Structured Review

    Spatial Transcriptomics Inc visium data analysis
    Visium Data Analysis, supplied by Spatial Transcriptomics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/visium+data+analysis/visium+data+analysis/pm37258682-535-2-0
    Average 90 stars, based on 1 article reviews
    visium data analysis - by Bioz Stars, 2026-09
    90/100 stars

    Images

    Related Articles

    Spatial Transcriptomics:

    Article Title: Hallmarks of transcriptional intratumour heterogeneity across a thousand tumours.
    Article Snippet: Avishai Gavish, Michael Tyler, Alissa C. Greenwald, Rouven Hoefflin, Dor Simkin, Roi Tschernichovsky, Noam Galili Darnell, Einav Somech, Chaya Barbolin, Tomer Antman, Daniel Kovarsky, Thomas Barrett, L. Nicolas Gonzalez Castro, Debdatta Halder, Rony Chanoch-Myers, Julie Laffy, Michael Mints, Adi Wider, Rotem Tal, Avishay Spitzer, Toshiro Hara, Maria Raitses-Gurevich, Chani Stossel, Talia Golan, Amit Tirosh, Mario L. Suvà, Sidharth V. Puram & Itay Tirosh1 ✉



    Similar Products

    analysis ○ xenium st data preparation ○ visium st data  (Spatial Transcriptomics Inc)
    86
    Spatial Transcriptomics Inc analysis ○ xenium st data preparation ○ visium st data
    Analysis ○ Xenium St Data Preparation ○ Visium St Data, supplied by Spatial Transcriptomics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/visium+data+analysis/analysis+data+data+preparation+st+st+visium+xenium+%E2%97%8B+%E2%97%8B/pmc12208317__mmc8-240-108-105
    Average 86 stars, based on 1 article reviews
    analysis ○ xenium st data preparation ○ visium st data - by Bioz Stars, 2026-09
    86/100 stars
    		  Buy from Supplier
    visium hd data analysis  (10X Genomics)
    86
    10X Genomics visium hd data analysis
    Fig. 8. Spatial transcriptomics analysis of GPR37 expression in human DRG. (A) Schematic diagram of flowchart for spatial transcriptomics analysis in human DRG <t>using</t> <t>10x</t> <t>Visium</t> HD platform and the gene expression matrices for the 8×8 μm bins. (B) Colocalization of GPR37 with CALCA in peptidergic neuron (indicated by filled arrows). Scale bar, 20 µm. The filled arrow with a cross indicates a bin with GPR37 expression only. (C) Co-expression of GPR37 and CSF1R in macrophages (indicated by an open arrow). Scale bar, 20 µm. The filled arrow with a cross indicates GPR37 expression in neuron. (D) Co-expression of GPR37 and CD163+ in M2 macrophage (indicated with open arrows). Scale bar, 20 µm. Left panels in B-D are H&E images showing the morphology of human DRG neurons, surrounded by many non-neuronal cells.
    Visium Hd Data Analysis, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/visium+data+analysis/hd+visium/pm40287118-146-0-8
    Average 86 stars, based on 1 article reviews
    visium hd data analysis - by Bioz Stars, 2026-09
    86/100 stars
    		  Buy from Supplier
    spaceranger, which is a full analysis pipeline designed specifically for visium data alongside brightfield or fluorescence microscope images  (10X Genomics)
    90
    10X Genomics spaceranger, which is a full analysis pipeline designed specifically for visium data alongside brightfield or fluorescence microscope images
    Fig. 8. Spatial transcriptomics analysis of GPR37 expression in human DRG. (A) Schematic diagram of flowchart for spatial transcriptomics analysis in human DRG <t>using</t> <t>10x</t> <t>Visium</t> HD platform and the gene expression matrices for the 8×8 μm bins. (B) Colocalization of GPR37 with CALCA in peptidergic neuron (indicated by filled arrows). Scale bar, 20 µm. The filled arrow with a cross indicates a bin with GPR37 expression only. (C) Co-expression of GPR37 and CSF1R in macrophages (indicated by an open arrow). Scale bar, 20 µm. The filled arrow with a cross indicates GPR37 expression in neuron. (D) Co-expression of GPR37 and CD163+ in M2 macrophage (indicated with open arrows). Scale bar, 20 µm. Left panels in B-D are H&E images showing the morphology of human DRG neurons, surrounded by many non-neuronal cells.
    Spaceranger, Which Is A Full Analysis Pipeline Designed Specifically For Visium Data Alongside Brightfield Or Fluorescence Microscope Images, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/visium+data+analysis/spaceranger++which+is+a+full+analysis+pipeline+designed+specifically+for+visium+data+alongside+brightfield+or+fluorescence+microscope+images/pmc11394603-156-23-31
    Average 90 stars, based on 1 article reviews
    spaceranger, which is a full analysis pipeline designed specifically for visium data alongside brightfield or fluorescence microscope images - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier
    visium spatial rnaseq data analysis  (Partek)
    90
    Partek visium spatial rnaseq data analysis
    Fig. 8. Spatial transcriptomics analysis of GPR37 expression in human DRG. (A) Schematic diagram of flowchart for spatial transcriptomics analysis in human DRG <t>using</t> <t>10x</t> <t>Visium</t> HD platform and the gene expression matrices for the 8×8 μm bins. (B) Colocalization of GPR37 with CALCA in peptidergic neuron (indicated by filled arrows). Scale bar, 20 µm. The filled arrow with a cross indicates a bin with GPR37 expression only. (C) Co-expression of GPR37 and CSF1R in macrophages (indicated by an open arrow). Scale bar, 20 µm. The filled arrow with a cross indicates GPR37 expression in neuron. (D) Co-expression of GPR37 and CD163+ in M2 macrophage (indicated with open arrows). Scale bar, 20 µm. Left panels in B-D are H&E images showing the morphology of human DRG neurons, surrounded by many non-neuronal cells.
    Visium Spatial Rnaseq Data Analysis, supplied by Partek, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/visium+data+analysis/visium+spatial+rnaseq+data+analysis/pm37925446-399-15-9
    Average 90 stars, based on 1 article reviews
    visium spatial rnaseq data analysis - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier
    visium spatial gene expression data analysis  (Partek)
    90
    Partek visium spatial gene expression data analysis
    Fig. 8. Spatial transcriptomics analysis of GPR37 expression in human DRG. (A) Schematic diagram of flowchart for spatial transcriptomics analysis in human DRG <t>using</t> <t>10x</t> <t>Visium</t> HD platform and the gene expression matrices for the 8×8 μm bins. (B) Colocalization of GPR37 with CALCA in peptidergic neuron (indicated by filled arrows). Scale bar, 20 µm. The filled arrow with a cross indicates a bin with GPR37 expression only. (C) Co-expression of GPR37 and CSF1R in macrophages (indicated by an open arrow). Scale bar, 20 µm. The filled arrow with a cross indicates GPR37 expression in neuron. (D) Co-expression of GPR37 and CD163+ in M2 macrophage (indicated with open arrows). Scale bar, 20 µm. Left panels in B-D are H&E images showing the morphology of human DRG neurons, surrounded by many non-neuronal cells.
    Visium Spatial Gene Expression Data Analysis, supplied by Partek, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/visium+data+analysis/visium+spatial+gene+expression+data+analysis/pm37773230-408-13-4
    Average 90 stars, based on 1 article reviews
    visium spatial gene expression data analysis - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier
    visium data analysis  (Spatial Transcriptomics Inc)
    90
    Spatial Transcriptomics Inc visium data analysis
    Fig. 8. Spatial transcriptomics analysis of GPR37 expression in human DRG. (A) Schematic diagram of flowchart for spatial transcriptomics analysis in human DRG <t>using</t> <t>10x</t> <t>Visium</t> HD platform and the gene expression matrices for the 8×8 μm bins. (B) Colocalization of GPR37 with CALCA in peptidergic neuron (indicated by filled arrows). Scale bar, 20 µm. The filled arrow with a cross indicates a bin with GPR37 expression only. (C) Co-expression of GPR37 and CSF1R in macrophages (indicated by an open arrow). Scale bar, 20 µm. The filled arrow with a cross indicates GPR37 expression in neuron. (D) Co-expression of GPR37 and CD163+ in M2 macrophage (indicated with open arrows). Scale bar, 20 µm. Left panels in B-D are H&E images showing the morphology of human DRG neurons, surrounded by many non-neuronal cells.
    Visium Data Analysis, supplied by Spatial Transcriptomics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/visium+data+analysis/visium+data+analysis/pm37258682-535-2-0
    Average 90 stars, based on 1 article reviews
    visium data analysis - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier

    Image Search Results


    Fig. 8. Spatial transcriptomics analysis of GPR37 expression in human DRG. (A) Schematic diagram of flowchart for spatial transcriptomics analysis in human DRG using 10x Visium HD platform and the gene expression matrices for the 8×8 μm bins. (B) Colocalization of GPR37 with CALCA in peptidergic neuron (indicated by filled arrows). Scale bar, 20 µm. The filled arrow with a cross indicates a bin with GPR37 expression only. (C) Co-expression of GPR37 and CSF1R in macrophages (indicated by an open arrow). Scale bar, 20 µm. The filled arrow with a cross indicates GPR37 expression in neuron. (D) Co-expression of GPR37 and CD163+ in M2 macrophage (indicated with open arrows). Scale bar, 20 µm. Left panels in B-D are H&E images showing the morphology of human DRG neurons, surrounded by many non-neuronal cells.

    Journal: Pharmacological research

    Article Title: Neuroprotectin D1 and GPR37 protect against chemotherapy-induced peripheral neuropathy and the transition from acute to chronic pain.

    doi: 10.1016/j.phrs.2025.107746

    Figure Lengend Snippet: Fig. 8. Spatial transcriptomics analysis of GPR37 expression in human DRG. (A) Schematic diagram of flowchart for spatial transcriptomics analysis in human DRG using 10x Visium HD platform and the gene expression matrices for the 8×8 μm bins. (B) Colocalization of GPR37 with CALCA in peptidergic neuron (indicated by filled arrows). Scale bar, 20 µm. The filled arrow with a cross indicates a bin with GPR37 expression only. (C) Co-expression of GPR37 and CSF1R in macrophages (indicated by an open arrow). Scale bar, 20 µm. The filled arrow with a cross indicates GPR37 expression in neuron. (D) Co-expression of GPR37 and CD163+ in M2 macrophage (indicated with open arrows). Scale bar, 20 µm. Left panels in B-D are H&E images showing the morphology of human DRG neurons, surrounded by many non-neuronal cells.

    Article Snippet: Visium HD Data Analysis: Space Ranger software (v3.1.2 10x Genomics) was used to process raw FASTQ files, align the reads to the reference transcriptome, and generate gene expression matrices for the default 2um, 8um, and 16um binning in each sample.

    Techniques: Expressing, Gene Expression