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slide seq  (10X Genomics)

 
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    10X Genomics slide seq
    Slide Seq, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/visium+array+slide/data+st/pmc08375048-83-4-11
    Average 86 stars, based on 1 article reviews
    slide seq - by Bioz Stars, 2026-10
    86/100 stars

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    Related Articles

    other:

    Article Title: scHolography: a computational method for single-cell spatial neighborhood reconstruction and analysis
    Article Snippet: We used previously published mouse kidney scRNA-seq data [ ] and ST data (10X Genomics Mouse Kidney Section Coronal, spaceranger-1.1.0 processed). scHolography reconstruction used the default settings.

    Article Title: Scalable image-based visualization and alignment of spatial transcriptomics datasets.
    Article Snippet: The datasets that were used for the alignment of mouse hippocampus sections were published in Slide-seq.7 The 10X Visium datasets were downloaded from the 10x Genomics website.

    Article Title: SpaceBender: Denoising Spatial Transcriptomics Data to Enhance Biological Signals
    Article Snippet: That is, publicly-available subcellular-resolution ST data (coronal slice of the mouse brain assayed with Xenium Prime, 10x Genomics) was computationally laid upon a spot-resolution (Visium-like) grid; transcripts were aggregated together if their spatial positions lay in the same computationally-defined spot.

    Article Title: Identification of METTL3 and PRMT5 as an oncogenic pair for the prognosis and therapeutic targets of colorectal cancer subtype.
    Article Snippet: The spatial transcriptome (ST) data for two CRC tissue samples were obtained from the 10X Genomics database (https://www.10xgenomics.com/).

    Spatial Transcriptomics:

    Article Title: Pan-cancer single cell and spatial transcriptomics analysis deciphers the molecular landscapes of senescence related cancer-associated fibroblasts and reveals its predictive value in neuroblastoma via integrated multi-omics analysis and machine learning.
    Article Snippet: .. To explore biological landscapes of CAFs in pan-cancer spatial transcriptomics (ST) resolution, we sourced ST slide data of various cancer types form 10x database (https://www.10xgenomics.com/cn/ frontiersin.org datasets), as well as GSE176078, GSE179572, GSE203612 and GSE181300 from GEO database. ..

    Article Title: Pan-cancer single cell and spatial transcriptomics analysis deciphers the molecular landscapes of senescence related cancer-associated fibroblasts and reveals its predictive value in neuroblastoma via integrated multi-omics analysis and machine learning
    Article Snippet: .. To explore biological landscapes of CAFs in pan-cancer spatial transcriptomics (ST) resolution, we sourced ST slide data of various cancer types form 10x database ( https://www.10xgenomics.com/cn/datasets ), as well as GSE176078, GSE179572, GSE203612 and GSE181300 from GEO database. ..

    Gene Expression:

    Article Title: Spatial and single-nucleus transcriptomic analysis of genetic and sporadic forms of Alzheimer's disease.
    Article Snippet: .. We performed a spatially resolved cross-species gene expression study of AD by generating ST data (10x Genomics Visium) from postmortem human prefrontal cortex (FCX; n = 10 cognitively healthy controls, n = 9 early-stage AD, n = 10 late-stage AD, n = 10 DSAD) and 5xFAD and wild-type (WT) mouse brains (n = 8–12 per group, 4–12 months; Fig. 1a–c and Supplementary Fig. 1). ..

    Article Title: Spatial and single-nucleus transcriptomic analysis of genetic and sporadic forms of Alzheimer’s disease
    Article Snippet: .. We performed a spatially resolved cross-species gene expression study of AD by generating ST data (10x Genomics Visium) from postmortem human prefrontal cortex (FCX; n = 10 cognitively healthy controls, n = 9 early-stage AD, n = 10 late-stage AD, n = 10 DSAD) and 5xFAD and wild-type (WT) mouse brains ( n = 8–12 per group, 4–12 months; Fig. and Supplementary Fig. ). ..



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    10X Genomics genomics visium array slides
    Fig. 5. SHT regulates genes expression in renal outer CTX. (A) The experimental design of spatial multi-omics. (B) UMAP dimensionality reduction of spatially resolved transcriptomic spots to visualize clusters. The x-axis and y-axis stand for PC1 and PC2 of UMAP dimensionality reduction in the above figure. Every point in the panel symbolizes a spot. Different colored spots represent different groups. Following the color of the above figure, the below panel depicts the precise spatial distribution of various clusters in the tissue slice of each sample. (C) The heatmap showing the relative intensities of differential gene expression in the outer CTX, inner CTX, outer MDLA, and inner MDLA across the three experimental groups. (D) Oat of tissue map in situ based on 10 <t>×</t> <t>Genomics</t> <t>Visium</t> platform. (E) IHC showing the distribution of Odc1 in renal outer CTX of rats in the three experimental groups. Scale, 50 µm.
    Genomics Visium Array Slides, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/visium+array+slide/expression+gene+slides+spatial+visium/pm40233505-106-17-21
    Average 86 stars, based on 1 article reviews
    genomics visium array slides - by Bioz Stars, 2026-10
    86/100 stars
    		  Buy from Supplier
    visium array slide  (10X Genomics)
    86
    10X Genomics visium array slide
    Fig. 5. SHT regulates genes expression in renal outer CTX. (A) The experimental design of spatial multi-omics. (B) UMAP dimensionality reduction of spatially resolved transcriptomic spots to visualize clusters. The x-axis and y-axis stand for PC1 and PC2 of UMAP dimensionality reduction in the above figure. Every point in the panel symbolizes a spot. Different colored spots represent different groups. Following the color of the above figure, the below panel depicts the precise spatial distribution of various clusters in the tissue slice of each sample. (C) The heatmap showing the relative intensities of differential gene expression in the outer CTX, inner CTX, outer MDLA, and inner MDLA across the three experimental groups. (D) Oat of tissue map in situ based on 10 <t>×</t> <t>Genomics</t> <t>Visium</t> platform. (E) IHC showing the distribution of Odc1 in renal outer CTX of rats in the three experimental groups. Scale, 50 µm.
    Visium Array Slide, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/visium+array+slide/expression+gene+slides+spatial+visium/pm38976559-382-7-18
    Average 86 stars, based on 1 article reviews
    visium array slide - by Bioz Stars, 2026-10
    86/100 stars
    		  Buy from Supplier

    Image Search Results


    Fig. 5. SHT regulates genes expression in renal outer CTX. (A) The experimental design of spatial multi-omics. (B) UMAP dimensionality reduction of spatially resolved transcriptomic spots to visualize clusters. The x-axis and y-axis stand for PC1 and PC2 of UMAP dimensionality reduction in the above figure. Every point in the panel symbolizes a spot. Different colored spots represent different groups. Following the color of the above figure, the below panel depicts the precise spatial distribution of various clusters in the tissue slice of each sample. (C) The heatmap showing the relative intensities of differential gene expression in the outer CTX, inner CTX, outer MDLA, and inner MDLA across the three experimental groups. (D) Oat of tissue map in situ based on 10 × Genomics Visium platform. (E) IHC showing the distribution of Odc1 in renal outer CTX of rats in the three experimental groups. Scale, 50 µm.

    Journal: Phytomedicine : international journal of phytotherapy and phytopharmacology

    Article Title: Spatially resolved multi-omics reveals the renal cortex-metabolic reprogramming of Shenhua Tablet for intervention on IgA nephropathy.

    doi: 10.1016/j.phymed.2025.156742

    Figure Lengend Snippet: Fig. 5. SHT regulates genes expression in renal outer CTX. (A) The experimental design of spatial multi-omics. (B) UMAP dimensionality reduction of spatially resolved transcriptomic spots to visualize clusters. The x-axis and y-axis stand for PC1 and PC2 of UMAP dimensionality reduction in the above figure. Every point in the panel symbolizes a spot. Different colored spots represent different groups. Following the color of the above figure, the below panel depicts the precise spatial distribution of various clusters in the tissue slice of each sample. (C) The heatmap showing the relative intensities of differential gene expression in the outer CTX, inner CTX, outer MDLA, and inner MDLA across the three experimental groups. (D) Oat of tissue map in situ based on 10 × Genomics Visium platform. (E) IHC showing the distribution of Odc1 in renal outer CTX of rats in the three experimental groups. Scale, 50 µm.

    Article Snippet: Two adjacent slices were placed on the SUPERFROST PLUS slides (Thermo Fisher, the USA) and 10 × Genomics Visium array slides (https://www.10xgenomics.co m/) for spatial metabolomics and transcriptomics analyses, respectively.

    Techniques: Expressing, Biomarker Discovery, Gene Expression, In Situ

    Fig. 6. SHT regulates the transcriptional heterogeneity of glomeruli and renal tubules in the outer CTX. (A) UMAP and in situ image showing the spatial distribution of diseased and normal glomeruli and renal tubules in the renal outer CTX of rats in the three group samples. (B) Spatial images and expression levels of G6pc1, Pck1, and Gpx3 in glomeruli based on 10x Genomics Visium platform. (C) The correlation analysis showing the negative correlation between G6pc1 and ascorbic acid, whereas the positive correlation between Gpx3 and NAD in renal tubules. The graph below displaying the spatial distribution of ascorbic acid and NAD. (D) Spatial images and expression levels of Gclc, Gpx3, and Oat in glomeruli based on 10x Genomics Visium platform.

    Journal: Phytomedicine : international journal of phytotherapy and phytopharmacology

    Article Title: Spatially resolved multi-omics reveals the renal cortex-metabolic reprogramming of Shenhua Tablet for intervention on IgA nephropathy.

    doi: 10.1016/j.phymed.2025.156742

    Figure Lengend Snippet: Fig. 6. SHT regulates the transcriptional heterogeneity of glomeruli and renal tubules in the outer CTX. (A) UMAP and in situ image showing the spatial distribution of diseased and normal glomeruli and renal tubules in the renal outer CTX of rats in the three group samples. (B) Spatial images and expression levels of G6pc1, Pck1, and Gpx3 in glomeruli based on 10x Genomics Visium platform. (C) The correlation analysis showing the negative correlation between G6pc1 and ascorbic acid, whereas the positive correlation between Gpx3 and NAD in renal tubules. The graph below displaying the spatial distribution of ascorbic acid and NAD. (D) Spatial images and expression levels of Gclc, Gpx3, and Oat in glomeruli based on 10x Genomics Visium platform.

    Article Snippet: Two adjacent slices were placed on the SUPERFROST PLUS slides (Thermo Fisher, the USA) and 10 × Genomics Visium array slides (https://www.10xgenomics.co m/) for spatial metabolomics and transcriptomics analyses, respectively.

    Techniques: In Situ, Expressing