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microarray  (10X Genomics)

 
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    10X Genomics microarray
    Microarray, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/visium+array+slide/microarray/pmc11399101-69-14-18
    Average 86 stars, based on 1 article reviews
    microarray - by Bioz Stars, 2026-10
    86/100 stars

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    Article Title: Systematic comparison of sequencing-based spatial transcriptomic methods
    Article Snippet: We systematically benchmarked spatial transcriptomics (sST) methods based on distinct spatial indexing strategies, encompassing microarray (probe-based and polyA-based 10X Genomics Visium , DynaSpatial ), bead-based approaches (HDST , BMKMANU S1000, Slide-seq V2 (ref. ), Curio Seeker (which is the commercialized version of Slide-seq at Curio Bioscience), Slide-tag ), polony- or nanoball-based technologies (Stereo-seq , PIXEL-seq , Salus) and microfluidics (DBiT-seq ).

    Article Title: Systematic comparison of sequencing-based spatial transcriptomic methods.
    Article Snippet: Benchmarking reference tissues and experimental design We systematically benchmarked spatial transcriptomics (sST) methods based on distinct spatial indexing strategies, encompassing microarray (probe-based and polyA-based 10X Genomics Visium13, DynaSpatial14), bead-based approaches (HDST15, BMKMANU S1000, Slide-seq V2 (ref. 16), Curio Seeker (which is the commercialized version of Slide-seq at Curio Bioscience), Slide-tag17), polony- or nanoball-based technologies (Stereo-seq18, PIXEL-seq19, Salus) and microfluidics (DBiT-seq20).



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    genomics visium array slides  (10X Genomics)
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    10X Genomics genomics visium array slides
    Fig. 5. SHT regulates genes expression in renal outer CTX. (A) The experimental design of spatial multi-omics. (B) UMAP dimensionality reduction of spatially resolved transcriptomic spots to visualize clusters. The x-axis and y-axis stand for PC1 and PC2 of UMAP dimensionality reduction in the above figure. Every point in the panel symbolizes a spot. Different colored spots represent different groups. Following the color of the above figure, the below panel depicts the precise spatial distribution of various clusters in the tissue slice of each sample. (C) The heatmap showing the relative intensities of differential gene expression in the outer CTX, inner CTX, outer MDLA, and inner MDLA across the three experimental groups. (D) Oat of tissue map in situ based on 10 <t>×</t> <t>Genomics</t> <t>Visium</t> platform. (E) IHC showing the distribution of Odc1 in renal outer CTX of rats in the three experimental groups. Scale, 50 µm.
    Genomics Visium Array Slides, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/visium+array+slide/expression+gene+slides+spatial+visium/pm40233505-106-17-21
    Average 86 stars, based on 1 article reviews
    genomics visium array slides - by Bioz Stars, 2026-10
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    visium array slide  (10X Genomics)
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    10X Genomics visium array slide
    Fig. 5. SHT regulates genes expression in renal outer CTX. (A) The experimental design of spatial multi-omics. (B) UMAP dimensionality reduction of spatially resolved transcriptomic spots to visualize clusters. The x-axis and y-axis stand for PC1 and PC2 of UMAP dimensionality reduction in the above figure. Every point in the panel symbolizes a spot. Different colored spots represent different groups. Following the color of the above figure, the below panel depicts the precise spatial distribution of various clusters in the tissue slice of each sample. (C) The heatmap showing the relative intensities of differential gene expression in the outer CTX, inner CTX, outer MDLA, and inner MDLA across the three experimental groups. (D) Oat of tissue map in situ based on 10 <t>×</t> <t>Genomics</t> <t>Visium</t> platform. (E) IHC showing the distribution of Odc1 in renal outer CTX of rats in the three experimental groups. Scale, 50 µm.
    Visium Array Slide, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/visium+array+slide/expression+gene+slides+spatial+visium/pm38976559-382-7-18
    Average 86 stars, based on 1 article reviews
    visium array slide - by Bioz Stars, 2026-10
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    Fig. 5. SHT regulates genes expression in renal outer CTX. (A) The experimental design of spatial multi-omics. (B) UMAP dimensionality reduction of spatially resolved transcriptomic spots to visualize clusters. The x-axis and y-axis stand for PC1 and PC2 of UMAP dimensionality reduction in the above figure. Every point in the panel symbolizes a spot. Different colored spots represent different groups. Following the color of the above figure, the below panel depicts the precise spatial distribution of various clusters in the tissue slice of each sample. (C) The heatmap showing the relative intensities of differential gene expression in the outer CTX, inner CTX, outer MDLA, and inner MDLA across the three experimental groups. (D) Oat of tissue map in situ based on 10 × Genomics Visium platform. (E) IHC showing the distribution of Odc1 in renal outer CTX of rats in the three experimental groups. Scale, 50 µm.

    Journal: Phytomedicine : international journal of phytotherapy and phytopharmacology

    Article Title: Spatially resolved multi-omics reveals the renal cortex-metabolic reprogramming of Shenhua Tablet for intervention on IgA nephropathy.

    doi: 10.1016/j.phymed.2025.156742

    Figure Lengend Snippet: Fig. 5. SHT regulates genes expression in renal outer CTX. (A) The experimental design of spatial multi-omics. (B) UMAP dimensionality reduction of spatially resolved transcriptomic spots to visualize clusters. The x-axis and y-axis stand for PC1 and PC2 of UMAP dimensionality reduction in the above figure. Every point in the panel symbolizes a spot. Different colored spots represent different groups. Following the color of the above figure, the below panel depicts the precise spatial distribution of various clusters in the tissue slice of each sample. (C) The heatmap showing the relative intensities of differential gene expression in the outer CTX, inner CTX, outer MDLA, and inner MDLA across the three experimental groups. (D) Oat of tissue map in situ based on 10 × Genomics Visium platform. (E) IHC showing the distribution of Odc1 in renal outer CTX of rats in the three experimental groups. Scale, 50 µm.

    Article Snippet: Two adjacent slices were placed on the SUPERFROST PLUS slides (Thermo Fisher, the USA) and 10 × Genomics Visium array slides (https://www.10xgenomics.co m/) for spatial metabolomics and transcriptomics analyses, respectively.

    Techniques: Expressing, Biomarker Discovery, Gene Expression, In Situ

    Fig. 6. SHT regulates the transcriptional heterogeneity of glomeruli and renal tubules in the outer CTX. (A) UMAP and in situ image showing the spatial distribution of diseased and normal glomeruli and renal tubules in the renal outer CTX of rats in the three group samples. (B) Spatial images and expression levels of G6pc1, Pck1, and Gpx3 in glomeruli based on 10x Genomics Visium platform. (C) The correlation analysis showing the negative correlation between G6pc1 and ascorbic acid, whereas the positive correlation between Gpx3 and NAD in renal tubules. The graph below displaying the spatial distribution of ascorbic acid and NAD. (D) Spatial images and expression levels of Gclc, Gpx3, and Oat in glomeruli based on 10x Genomics Visium platform.

    Journal: Phytomedicine : international journal of phytotherapy and phytopharmacology

    Article Title: Spatially resolved multi-omics reveals the renal cortex-metabolic reprogramming of Shenhua Tablet for intervention on IgA nephropathy.

    doi: 10.1016/j.phymed.2025.156742

    Figure Lengend Snippet: Fig. 6. SHT regulates the transcriptional heterogeneity of glomeruli and renal tubules in the outer CTX. (A) UMAP and in situ image showing the spatial distribution of diseased and normal glomeruli and renal tubules in the renal outer CTX of rats in the three group samples. (B) Spatial images and expression levels of G6pc1, Pck1, and Gpx3 in glomeruli based on 10x Genomics Visium platform. (C) The correlation analysis showing the negative correlation between G6pc1 and ascorbic acid, whereas the positive correlation between Gpx3 and NAD in renal tubules. The graph below displaying the spatial distribution of ascorbic acid and NAD. (D) Spatial images and expression levels of Gclc, Gpx3, and Oat in glomeruli based on 10x Genomics Visium platform.

    Article Snippet: Two adjacent slices were placed on the SUPERFROST PLUS slides (Thermo Fisher, the USA) and 10 × Genomics Visium array slides (https://www.10xgenomics.co m/) for spatial metabolomics and transcriptomics analyses, respectively.

    Techniques: In Situ, Expressing