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nearest neighbours approach of the two-dimensional deconvolution setup  (MetaMorph Inc)

 
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    MetaMorph Inc nearest neighbours approach of the two-dimensional deconvolution setup
    Nearest Neighbours Approach Of The Two Dimensional Deconvolution Setup, supplied by MetaMorph Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/two-dimensional+deconvolution/no+neighbors+deconvolution+function+in/pmc03069024-397-11-14
    Average 90 stars, based on 1 article reviews
    nearest neighbours approach of the two-dimensional deconvolution setup - by Bioz Stars, 2026-10
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    Article Snippet: This was done using a no-neighbors deconvolution algorithm (Metamorph) performed on the WGA images.

    Cell Tracking Assay:

    Article Title: Homeostatic lymphoid chemokines synergize with adhesion ligands to trigger T and B lymphocyte chemokinesis.
    Article Snippet: Cell polarization and migration were analyzed with the aid of Metamorph and Volocity (Improvision) software packages. .. Data were sharpened with the no-neighbors two-dimensional deconvolution algorithm in Metamorph to facilitate cell tracking using Volocity. ..

    Produced:

    Article Title: Aligned neurite bundles of granule cells regulate orientation of Purkinje cell dendrites by perpendicular contact guidance in two-dimensional and three-dimensional mouse cerebellar cultures.
    Article Snippet: To identify structures that determine the 90° orientation of thin espalier dendritic trees of Purkinje cells with respect to parallel fibers (axonal neurite bundles of granule cells) in the cerebellar cortex, we designed five types of two-dimensional and three-dimensional cell and tissue cultures of cerebella from postnatal mice and analyzed the orientation of Purkinje cell dendrites with respect to neurite bundles and astrocyte fibers by immunofluorescence double or triple staining.. We cultured dissociated cerebellar cells on micropatterned substrates and preformed neurite bundles of a microexplant culture two-dimensionally and in matrix gels threedimensionally.. Dendrites, but not axons, of Purkinje cells extended toward the neurites of granule cells and oriented at right angles two-dimensionally to aligned neurite bundles in the three cultures.

    Imaging:

    Article Title: Roles for MreC and MreD proteins in helical growth of the cylindrical cell wall in Bacillus subtilis.
    Article Snippet: .. For GFP imaging out of focus light was removed using the No Neighbours Deconvolution utility of the Metamorph program. ..



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    cLTP-enhanced recycling facilitates TrkB-FL translocation into postsynaptic densities. A, Hippocampal neurons (18 DIV) were transfected with GFP and treated with various agents as indicated. Endogenous TrkB-FL stained by the Trk (C-14) antibody that recognizes the C terminus of Trk (catalog# sc-11; Santa Cruz Biotechnology) was labeled red. Arrowheads and arrows denote protrusions with and without TrkB in the spine head, respectively. Scale bars, 1 μm. B, Three types of TrkB-FL distribution in spines. Scale bars, 2 μm. C, Proportions of spines containing TrkB-FL in the indicated locations. Graphs represent means ± SEM (n = 116, 169, and 135 spines analyzed from 8, 8, and 10 neurons, respectively, *p < 0.05 relative to no BDNF control of each group, #p < 0.05, χ2 test. D, Coimmunofluorescence labeling of recycled TrkB and PSD-95 in neurons (9 DIV) transfected with pcDNA3.1 or pCAGIG-GFP-Rab11S25N. Hippocampal neurons were stained for recycled TrkB (green) and PSD-95 (red) with (left) or without (right) glycine stimulation. Blue indicates neurons expressing pcAGIG-GFP-Rab11S25N. Colocalization is indicated by white arrows. Scale bars, 10 μm. E, Quantification analysis of the colocalization of recycled TrkB-FL or TrkB.T1 with PSD-95 in D. Graphs represent means ± SEM (n ≥ 30 cells for each condition per experiment, ***p < 0.001 relative to its baseline, #p < 0.05, Student's t test). F, Quantification analysis of the clusters of PSD95. Images were taken using a 100× objective and two-dimensional <t>deconvolution</t> software (MetaMorph) was used.
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    cLTP-enhanced recycling facilitates TrkB-FL translocation into postsynaptic densities. A, Hippocampal neurons (18 DIV) were transfected with GFP and treated with various agents as indicated. Endogenous TrkB-FL stained by the Trk (C-14) antibody that recognizes the C terminus of Trk (catalog# sc-11; Santa Cruz Biotechnology) was labeled red. Arrowheads and arrows denote protrusions with and without TrkB in the spine head, respectively. Scale bars, 1 μm. B, Three types of TrkB-FL distribution in spines. Scale bars, 2 μm. C, Proportions of spines containing TrkB-FL in the indicated locations. Graphs represent means ± SEM (n = 116, 169, and 135 spines analyzed from 8, 8, and 10 neurons, respectively, *p < 0.05 relative to no BDNF control of each group, #p < 0.05, χ2 test. D, Coimmunofluorescence labeling of recycled TrkB and PSD-95 in neurons (9 DIV) transfected with pcDNA3.1 or pCAGIG-GFP-Rab11S25N. Hippocampal neurons were stained for recycled TrkB (green) and PSD-95 (red) with (left) or without (right) glycine stimulation. Blue indicates neurons expressing pcAGIG-GFP-Rab11S25N. Colocalization is indicated by white arrows. Scale bars, 10 μm. E, Quantification analysis of the colocalization of recycled TrkB-FL or TrkB.T1 with PSD-95 in D. Graphs represent means ± SEM (n ≥ 30 cells for each condition per experiment, ***p < 0.001 relative to its baseline, #p < 0.05, Student's t test). F, Quantification analysis of the clusters of PSD95. Images were taken using a 100× objective and two-dimensional deconvolution software (MetaMorph) was used.

    Journal: The Journal of Neuroscience

    Article Title: BDNF-Dependent Recycling Facilitates TrkB Translocation to Postsynaptic Density during LTP via a Rab11-Dependent Pathway

    doi: 10.1523/JNEUROSCI.3256-12.2013

    Figure Lengend Snippet: cLTP-enhanced recycling facilitates TrkB-FL translocation into postsynaptic densities. A, Hippocampal neurons (18 DIV) were transfected with GFP and treated with various agents as indicated. Endogenous TrkB-FL stained by the Trk (C-14) antibody that recognizes the C terminus of Trk (catalog# sc-11; Santa Cruz Biotechnology) was labeled red. Arrowheads and arrows denote protrusions with and without TrkB in the spine head, respectively. Scale bars, 1 μm. B, Three types of TrkB-FL distribution in spines. Scale bars, 2 μm. C, Proportions of spines containing TrkB-FL in the indicated locations. Graphs represent means ± SEM (n = 116, 169, and 135 spines analyzed from 8, 8, and 10 neurons, respectively, *p < 0.05 relative to no BDNF control of each group, #p < 0.05, χ2 test. D, Coimmunofluorescence labeling of recycled TrkB and PSD-95 in neurons (9 DIV) transfected with pcDNA3.1 or pCAGIG-GFP-Rab11S25N. Hippocampal neurons were stained for recycled TrkB (green) and PSD-95 (red) with (left) or without (right) glycine stimulation. Blue indicates neurons expressing pcAGIG-GFP-Rab11S25N. Colocalization is indicated by white arrows. Scale bars, 10 μm. E, Quantification analysis of the colocalization of recycled TrkB-FL or TrkB.T1 with PSD-95 in D. Graphs represent means ± SEM (n ≥ 30 cells for each condition per experiment, ***p < 0.001 relative to its baseline, #p < 0.05, Student's t test). F, Quantification analysis of the clusters of PSD95. Images were taken using a 100× objective and two-dimensional deconvolution software (MetaMorph) was used.

    Article Snippet: Images were taken using a 100× objective and two-dimensional deconvolution software (MetaMorph) was used.

    Techniques: Translocation Assay, Transfection, Staining, Labeling, Control, Expressing, Software