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SourceForge net trinity tool
Trinity Tool, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/trinity+software/trinity+software/pmc09437100-90-13-16
Average 90 stars, based on 1 article reviews
trinity tool - by Bioz Stars, 2026-09
90/100 stars

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Related Articles

Software:

Article Title: Salicylic acid-mediated alleviation of salt stress: Insights from physiological and transcriptomic analysis in Asarum sieboldii Miq.
Article Snippet: • This study explores the SA potential to alleviate salt stress in A. sieboldii Miq.. • SA boosts antioxidants, raises chlorophyll, and limits oxidative damage.. • Key TFs and genes had unique expressional variations under SA-coupled salt

Article Title: Morphophysiological and transcriptomic analyses during the development of microspores and megaspores in Orobanche coerulescens
Article Snippet: .. After assembling the clean reads into unigenes using Trinity software ( http://trinityrnaseq.sourceforge.net ), 108,170 unigenes from all samples were annotated using the (Non-Redundant Database) NR, (Kyoto Encyclopedia of Genes and Genomes) KEGG, (euKaryotic Orthologous Groups) KOG, and Swiss-Prot databases through Blastx. ..

Article Title: Comparative Transcriptome Analysis of the Effects of a Non-Insect Artificial Diet on the Nutritional Development of Harmonia axyridis .
Article Snippet: .. De novo transcriptome assembly was performed using Trinity software (http://TrinityRNASeq.sourceforge.net, accessed on 1 June 2024) with the filtered RNA- Insects 2025, 16, 380 5 of 15 seq data [35]. .. Redundant contigs were clustered and removed via CD-HIT, generating a non-redundant unigene dataset.

Article Title: Transcriptome and Metabolome Profiling Provide Insights into Flavonoid Biosynthesis and the Mechanism of Color Formation in Zanthoxylum bungeanum Maxim.
Article Snippet: .. Trinity software (version 2.0.6) (http://trinityrnaseq. sourceforge.net/, accessed on 12 June 2020) was used for clean read assembly, and the assembled transcript sequences served as the reference sequence. .. The longest cluster sequence obtained from Corset hierarchical clustering was designated as the unigene for subsequent analyses.

Article Title: Comparative Transcriptome Analysis of the Effects of a Non-Insect Artificial Diet on the Nutritional Development of Harmonia axyridis
Article Snippet: .. De novo transcriptome assembly was performed using Trinity software ( http://TrinityRNASeq.sourceforge.net , accessed on 1 June 2024) with the filtered RNA-seq data [ ]. .. Redundant contigs were clustered and removed via CD-HIT, generating a non-redundant unigene dataset.

Article Title: Coordinated microRNA/mRNA Expression Profiles Reveal Unique Skin Color Regulatory Mechanisms in Chinese Giant Salamander ( Andrias davidianus )
Article Snippet: Finally, the PCR products were purified using the AMPure XP system, and the quality of the library was evaluated on the Agilent Bioanalyzer 2100 system. .. The clean reads were assembled using the Trinity software ( https://sourceforge.net/projects/trinityrnaseq/files/ (accessed on 1 July 2021), trinityrnaseq-2.1.1). ..

Sequencing:

Article Title: Transcriptome and Metabolome Profiling Provide Insights into Flavonoid Biosynthesis and the Mechanism of Color Formation in Zanthoxylum bungeanum Maxim.
Article Snippet: .. Trinity software (version 2.0.6) (http://trinityrnaseq. sourceforge.net/, accessed on 12 June 2020) was used for clean read assembly, and the assembled transcript sequences served as the reference sequence. .. The longest cluster sequence obtained from Corset hierarchical clustering was designated as the unigene for subsequent analyses.

other:

Article Title: Physiological and transcriptomic analyses reveal the regulatory mechanisms of Anoectochilus roxburghii in response to high-temperature stress
Article Snippet: Using Trinity (version 2.14.0) software ( https://trinityrnaseq.sourceforge.net ), reads were first broken down into shorter fragment K-mers, and then these small fragments were extended to assemble fragments without N (Contig), and the fragment component was obtained by using the overlap between these fragments.

RNA Sequencing:

Article Title: Comparative Transcriptome Analysis of the Effects of a Non-Insect Artificial Diet on the Nutritional Development of Harmonia axyridis
Article Snippet: .. De novo transcriptome assembly was performed using Trinity software ( http://TrinityRNASeq.sourceforge.net , accessed on 1 June 2024) with the filtered RNA-seq data [ ]. .. Redundant contigs were clustered and removed via CD-HIT, generating a non-redundant unigene dataset.



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