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spatial transcriptomics st slides  (Spatial Transcriptomics Inc)

 
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    Spatial Transcriptomics Inc spatial transcriptomics st slides
    Spatial Transcriptomics St Slides, supplied by Spatial Transcriptomics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/transcriptomics+st/slides+spatial+st+transcriptomics/pmc12591104-242-0-0
    Average 86 stars, based on 1 article reviews
    spatial transcriptomics st slides - by Bioz Stars, 2026-09
    86/100 stars

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    Related Articles

    Spatial Transcriptomics:

    Article Title: Targeting fibroblast derived thrombospondin 2 disrupts an immune-exclusionary environment at the tumor front in colorectal cancer
    Article Snippet: .. Spatial Transcriptomics (ST) slides were made from FFPE blocks of surgically resected CRC specimens which were determined as CMS1/MSI, CMS2, or CMS4 by using RNA-seq data (for Visium) or staining (for Xenium) based on previous reports . .. Visium ST analysis was performed by Takara Bio, Japan.

    Article Title: CD81 + senescent-like fibroblasts exaggerate inflammation and activate neutrophils via C3/C3aR1 axis in periodontitis
    Article Snippet: .. Spatial transcriptomics slides were printed with two identical capture areas from one healthy sample and one periodontitis sample ( ). ..

    Article Title: Globotriaosylceramide Gb3 Influences Wound Healing and Scar Formation by Orchestrating Fibroblast Heterogeneity
    Article Snippet: [ ] The graphic flow diagram as well as the scientific hypothesis picture, were generated using Biorender ( https://biorender.com/ ). .. Spatial transcriptomics (ST) slides were captured from 2 SDB patients for the investigation of gene expression profiles. .. The overall procedure was conducted by the Visium Spatial platform of 10x Genomics ( https://www.10xgenomics.com/platforms/visium ).

    Formalin-fixed Paraffin-Embedded:

    Article Title: Targeting fibroblast derived thrombospondin 2 disrupts an immune-exclusionary environment at the tumor front in colorectal cancer
    Article Snippet: .. Spatial Transcriptomics (ST) slides were made from FFPE blocks of surgically resected CRC specimens which were determined as CMS1/MSI, CMS2, or CMS4 by using RNA-seq data (for Visium) or staining (for Xenium) based on previous reports . .. Visium ST analysis was performed by Takara Bio, Japan.

    RNA Sequencing:

    Article Title: Targeting fibroblast derived thrombospondin 2 disrupts an immune-exclusionary environment at the tumor front in colorectal cancer
    Article Snippet: .. Spatial Transcriptomics (ST) slides were made from FFPE blocks of surgically resected CRC specimens which were determined as CMS1/MSI, CMS2, or CMS4 by using RNA-seq data (for Visium) or staining (for Xenium) based on previous reports . .. Visium ST analysis was performed by Takara Bio, Japan.

    Staining:

    Article Title: Targeting fibroblast derived thrombospondin 2 disrupts an immune-exclusionary environment at the tumor front in colorectal cancer
    Article Snippet: .. Spatial Transcriptomics (ST) slides were made from FFPE blocks of surgically resected CRC specimens which were determined as CMS1/MSI, CMS2, or CMS4 by using RNA-seq data (for Visium) or staining (for Xenium) based on previous reports . .. Visium ST analysis was performed by Takara Bio, Japan.

    Gene Expression:

    Article Title: Globotriaosylceramide Gb3 Influences Wound Healing and Scar Formation by Orchestrating Fibroblast Heterogeneity
    Article Snippet: [ ] The graphic flow diagram as well as the scientific hypothesis picture, were generated using Biorender ( https://biorender.com/ ). .. Spatial transcriptomics (ST) slides were captured from 2 SDB patients for the investigation of gene expression profiles. .. The overall procedure was conducted by the Visium Spatial platform of 10x Genomics ( https://www.10xgenomics.com/platforms/visium ).



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    breast cancer spatial transcriptomics st  (Spatial Transcriptomics Inc)
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    Spatial Transcriptomics Inc breast cancer spatial transcriptomics st
    Spatial organization and cell-cell communication networks in the tumor microenvironment. (A–C) The developmental trajectories of cell sub-populations from a spatial perspective are investigated. (D, E) Heatmap and network diagrams displaying cell–cell dependency analysis in the colocated, neighboring, and extended neighboring (15-point) regions of the spatial <t>transcriptomics</t> data. (F) The interaction heatmap visualized the intensity of intercellular interactions mediated by the ligand-receptor pairs. (G) The spatial cell communication network diagram illustrates that NUhighepi exhibit a higher intensity of cell communication with other cells. (H) Circos plot summarizing cell-type-specific interaction patterns.
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    Spatial organization and cell-cell communication networks in the tumor microenvironment. (A–C) The developmental trajectories of cell sub-populations from a spatial perspective are investigated. (D, E) Heatmap and network diagrams displaying cell–cell dependency analysis in the colocated, neighboring, and extended neighboring (15-point) regions of the spatial transcriptomics data. (F) The interaction heatmap visualized the intensity of intercellular interactions mediated by the ligand-receptor pairs. (G) The spatial cell communication network diagram illustrates that NUhighepi exhibit a higher intensity of cell communication with other cells. (H) Circos plot summarizing cell-type-specific interaction patterns.

    Journal: Frontiers in Oncology

    Article Title: Spatial transcriptome and single-cell sequencing reveal the role of nucleotide metabolism in breast cancer progression and tumor microenvironment

    doi: 10.3389/fonc.2025.1703778

    Figure Lengend Snippet: Spatial organization and cell-cell communication networks in the tumor microenvironment. (A–C) The developmental trajectories of cell sub-populations from a spatial perspective are investigated. (D, E) Heatmap and network diagrams displaying cell–cell dependency analysis in the colocated, neighboring, and extended neighboring (15-point) regions of the spatial transcriptomics data. (F) The interaction heatmap visualized the intensity of intercellular interactions mediated by the ligand-receptor pairs. (G) The spatial cell communication network diagram illustrates that NUhighepi exhibit a higher intensity of cell communication with other cells. (H) Circos plot summarizing cell-type-specific interaction patterns.

    Article Snippet: Breast cancer spatial transcriptomics (ST) data were acquired from the GEO database ( https://www.ncbi.nlm.nih.gov/geo/ ) and 10x Genomics official website ( https://www.10xgenomics.com/ ).

    Techniques: