Review




Structured Review

10X Genomics transcriptome st data
Transcriptome St Data, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/transcriptomics+st/data+st/pm42121254-153-2-14
Average 86 stars, based on 1 article reviews
transcriptome st data - by Bioz Stars, 2026-09
86/100 stars

Images

Related Articles

other:

Article Title: scHolography: a computational method for single-cell spatial neighborhood reconstruction and analysis
Article Snippet: We used previously published mouse kidney scRNA-seq data [ ] and ST data (10X Genomics Mouse Kidney Section Coronal, spaceranger-1.1.0 processed). scHolography reconstruction used the default settings.

Article Title: Scalable image-based visualization and alignment of spatial transcriptomics datasets.
Article Snippet: The datasets that were used for the alignment of mouse hippocampus sections were published in Slide-seq.7 The 10X Visium datasets were downloaded from the 10x Genomics website.

Article Title: SpaceBender: Denoising Spatial Transcriptomics Data to Enhance Biological Signals
Article Snippet: That is, publicly-available subcellular-resolution ST data (coronal slice of the mouse brain assayed with Xenium Prime, 10x Genomics) was computationally laid upon a spot-resolution (Visium-like) grid; transcripts were aggregated together if their spatial positions lay in the same computationally-defined spot.

Article Title: Identification of METTL3 and PRMT5 as an oncogenic pair for the prognosis and therapeutic targets of colorectal cancer subtype.
Article Snippet: The spatial transcriptome (ST) data for two CRC tissue samples were obtained from the 10X Genomics database (https://www.10xgenomics.com/).

Spatial Transcriptomics:

Article Title: Pan-cancer single cell and spatial transcriptomics analysis deciphers the molecular landscapes of senescence related cancer-associated fibroblasts and reveals its predictive value in neuroblastoma via integrated multi-omics analysis and machine learning.
Article Snippet: .. To explore biological landscapes of CAFs in pan-cancer spatial transcriptomics (ST) resolution, we sourced ST slide data of various cancer types form 10x database (https://www.10xgenomics.com/cn/ frontiersin.org datasets), as well as GSE176078, GSE179572, GSE203612 and GSE181300 from GEO database. ..

Article Title: Pan-cancer single cell and spatial transcriptomics analysis deciphers the molecular landscapes of senescence related cancer-associated fibroblasts and reveals its predictive value in neuroblastoma via integrated multi-omics analysis and machine learning
Article Snippet: .. To explore biological landscapes of CAFs in pan-cancer spatial transcriptomics (ST) resolution, we sourced ST slide data of various cancer types form 10x database ( https://www.10xgenomics.com/cn/datasets ), as well as GSE176078, GSE179572, GSE203612 and GSE181300 from GEO database. ..

Gene Expression:

Article Title: Spatial and single-nucleus transcriptomic analysis of genetic and sporadic forms of Alzheimer's disease.
Article Snippet: .. We performed a spatially resolved cross-species gene expression study of AD by generating ST data (10x Genomics Visium) from postmortem human prefrontal cortex (FCX; n = 10 cognitively healthy controls, n = 9 early-stage AD, n = 10 late-stage AD, n = 10 DSAD) and 5xFAD and wild-type (WT) mouse brains (n = 8–12 per group, 4–12 months; Fig. 1a–c and Supplementary Fig. 1). ..

Article Title: Spatial and single-nucleus transcriptomic analysis of genetic and sporadic forms of Alzheimer’s disease
Article Snippet: .. We performed a spatially resolved cross-species gene expression study of AD by generating ST data (10x Genomics Visium) from postmortem human prefrontal cortex (FCX; n = 10 cognitively healthy controls, n = 9 early-stage AD, n = 10 late-stage AD, n = 10 DSAD) and 5xFAD and wild-type (WT) mouse brains ( n = 8–12 per group, 4–12 months; Fig. and Supplementary Fig. ). ..



Similar Products

86
10X Genomics transcriptome st data
Transcriptome St Data, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/transcriptomics+st/data+st/pm42121254-153-2-14
Average 86 stars, based on 1 article reviews
transcriptome st data - by Bioz Stars, 2026-09
86/100 stars
  Buy from Supplier

86
Spatial Transcriptomics Inc spatial transcriptomics st data
Spatial Transcriptomics St Data, supplied by Spatial Transcriptomics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/transcriptomics+st/data+sequencing+spatial+transcriptomics/pm41610146-199-7-7
Average 86 stars, based on 1 article reviews
spatial transcriptomics st data - by Bioz Stars, 2026-09
86/100 stars
  Buy from Supplier

86
Spatial Transcriptomics Inc visium spatial transcriptomics st
Visium Spatial Transcriptomics St, supplied by Spatial Transcriptomics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/transcriptomics+st/data+spatial+transcriptomics+visium/pm41592568-773-7-8
Average 86 stars, based on 1 article reviews
visium spatial transcriptomics st - by Bioz Stars, 2026-09
86/100 stars
  Buy from Supplier

86
Spatial Transcriptomics Inc spatial transcriptomics st
Spatial Transcriptomics St, supplied by Spatial Transcriptomics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/transcriptomics+st/visium/pmc12857762-212-0-0
Average 86 stars, based on 1 article reviews
spatial transcriptomics st - by Bioz Stars, 2026-09
86/100 stars
  Buy from Supplier

86
Spatial Transcriptomics Inc spatial transcriptomics st technologies
Spatial Transcriptomics St Technologies, supplied by Spatial Transcriptomics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/transcriptomics+st/spatial+st+technologies+transcriptomics/pm41611568-21-0-0
Average 86 stars, based on 1 article reviews
spatial transcriptomics st technologies - by Bioz Stars, 2026-09
86/100 stars
  Buy from Supplier

86
Spatial Transcriptomics Inc transcriptomics st links tissue morphology
Transcriptomics St Links Tissue Morphology, supplied by Spatial Transcriptomics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/transcriptomics+st/spatial+st+technologies+transcriptomics/pm41545411-0-2-1
Average 86 stars, based on 1 article reviews
transcriptomics st links tissue morphology - by Bioz Stars, 2026-09
86/100 stars
  Buy from Supplier

86
Spatial Transcriptomics Inc breast cancer spatial transcriptomics st
Spatial organization and cell-cell communication networks in the tumor microenvironment. (A–C) The developmental trajectories of cell sub-populations from a spatial perspective are investigated. (D, E) Heatmap and network diagrams displaying cell–cell dependency analysis in the colocated, neighboring, and extended neighboring (15-point) regions of the spatial <t>transcriptomics</t> data. (F) The interaction heatmap visualized the intensity of intercellular interactions mediated by the ligand-receptor pairs. (G) The spatial cell communication network diagram illustrates that NUhighepi exhibit a higher intensity of cell communication with other cells. (H) Circos plot summarizing cell-type-specific interaction patterns.
Breast Cancer Spatial Transcriptomics St, supplied by Spatial Transcriptomics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/transcriptomics+st/breast+data+her2+human+positive+spatial+transcriptomics+tumor/pmc12847018-99-0-2
Average 86 stars, based on 1 article reviews
breast cancer spatial transcriptomics st - by Bioz Stars, 2026-09
86/100 stars
  Buy from Supplier

Image Search Results


Spatial organization and cell-cell communication networks in the tumor microenvironment. (A–C) The developmental trajectories of cell sub-populations from a spatial perspective are investigated. (D, E) Heatmap and network diagrams displaying cell–cell dependency analysis in the colocated, neighboring, and extended neighboring (15-point) regions of the spatial transcriptomics data. (F) The interaction heatmap visualized the intensity of intercellular interactions mediated by the ligand-receptor pairs. (G) The spatial cell communication network diagram illustrates that NUhighepi exhibit a higher intensity of cell communication with other cells. (H) Circos plot summarizing cell-type-specific interaction patterns.

Journal: Frontiers in Oncology

Article Title: Spatial transcriptome and single-cell sequencing reveal the role of nucleotide metabolism in breast cancer progression and tumor microenvironment

doi: 10.3389/fonc.2025.1703778

Figure Lengend Snippet: Spatial organization and cell-cell communication networks in the tumor microenvironment. (A–C) The developmental trajectories of cell sub-populations from a spatial perspective are investigated. (D, E) Heatmap and network diagrams displaying cell–cell dependency analysis in the colocated, neighboring, and extended neighboring (15-point) regions of the spatial transcriptomics data. (F) The interaction heatmap visualized the intensity of intercellular interactions mediated by the ligand-receptor pairs. (G) The spatial cell communication network diagram illustrates that NUhighepi exhibit a higher intensity of cell communication with other cells. (H) Circos plot summarizing cell-type-specific interaction patterns.

Article Snippet: Breast cancer spatial transcriptomics (ST) data were acquired from the GEO database ( https://www.ncbi.nlm.nih.gov/geo/ ) and 10x Genomics official website ( https://www.10xgenomics.com/ ).

Techniques: