Review




Structured Review

Human Protein Atlas transcriptome datasets
Overview of TiSMeD TiSMeD is a comprehensive resource that integrates 6,782 methylomes, 16,894 <t>transcriptomes,</t> and 241 proteomes obtained from multiple platforms. All datasets were processed using a standardized pipeline, resulting in the identification of 67,427 TSMs, 4,607 TSGs, and 2,833 TSPs based on tissue specificity and confidence score evaluation. In addition, TiSMeD includes 11,411,136 HKMs. TiSMeD features a user-friendly interface that enables data searching, browsing, downloading, and visualization.
Transcriptome Datasets, supplied by Human Protein Atlas, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/transcriptome/database+hpa/pmc13011251-181-1-14
Average 86 stars, based on 1 article reviews
transcriptome datasets - by Bioz Stars, 2026-10
86/100 stars

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1) Product Images from "TiSMeD: A tissue-specific methylation and expression database for biomarker and translational applications"

Article Title: TiSMeD: A tissue-specific methylation and expression database for biomarker and translational applications

Journal: Molecular Therapy. Nucleic Acids

doi: 10.1016/j.omtn.2026.102884

Overview of TiSMeD TiSMeD is a comprehensive resource that integrates 6,782 methylomes, 16,894 transcriptomes, and 241 proteomes obtained from multiple platforms. All datasets were processed using a standardized pipeline, resulting in the identification of 67,427 TSMs, 4,607 TSGs, and 2,833 TSPs based on tissue specificity and confidence score evaluation. In addition, TiSMeD includes 11,411,136 HKMs. TiSMeD features a user-friendly interface that enables data searching, browsing, downloading, and visualization.
Figure Legend Snippet: Overview of TiSMeD TiSMeD is a comprehensive resource that integrates 6,782 methylomes, 16,894 transcriptomes, and 241 proteomes obtained from multiple platforms. All datasets were processed using a standardized pipeline, resulting in the identification of 67,427 TSMs, 4,607 TSGs, and 2,833 TSPs based on tissue specificity and confidence score evaluation. In addition, TiSMeD includes 11,411,136 HKMs. TiSMeD features a user-friendly interface that enables data searching, browsing, downloading, and visualization.

Techniques Used:

Related Articles

Expressing:

Article Title: Desmoglein 2 is associated with dihydroartemisinin resistance in HeLa cervical cancer cells: a potential link to the PI3K/AKT signaling pathway.
Article Snippet: .. AR TIC LE IN PR ES S ARTICLE IN PRESS present study was primarily conducted in the HeLa cell line, we validated the prognostic value of DSG2 using TCGA‐CESC clinical data and confirmed its protein expression via the Human Protein Atlas (HPA) database. ..

Article Title: Integrative Bioinformatics Analysis Reveals COL13A1 and COL23A1 as Potential Diagnostic and Prognostic Biomarkers in Thyroid Cancer
Article Snippet: .. The Human Protein Atlas (HPA) database was used to analyze histological images and evaluate the protein expression levels of COL13A1 and COL23A1 genes. ..

Article Title: TiSMeD: A tissue-specific methylation and expression database for biomarker and translational applications
Article Snippet: .. The transcriptome datasets were obtained from GEO, , the Genotype-Tissue Expression (GTEx) database, the Human Protein Atlas (HPA), and the RNA-seq Atlas. ..

Immunohistochemical staining:

Article Title: Filamin C activates MAPK/ERK signaling to facilitate epithelial-mesenchymal transition in bladder cancer.
Article Snippet: Background Bladder cancer (BC) is a prevalent malignancy with high metastatic and recurrent potential.. Filamin C (FLNC) has been reported implicated in various cancers, but its role in BC remains unclear.. Methods Bioinformatics analysis using The gene expression profiling interactive analysis (GEPIA) and The cancer genome atlas (TCGA) databases assessed FLNC expression, prognosis, and multivariate Cox regression in bladder urothelial carcinoma (BLCA).

RNA Sequencing:

Article Title: TiSMeD: A tissue-specific methylation and expression database for biomarker and translational applications
Article Snippet: .. The transcriptome datasets were obtained from GEO, , the Genotype-Tissue Expression (GTEx) database, the Human Protein Atlas (HPA), and the RNA-seq Atlas. ..



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