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tomato genome array genechip  (Thermo Fisher)


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    Structured Review

    Thermo Fisher tomato genome array genechip
    Tomato Genome Array Genechip, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/tomato+genome+array/pmc03465262-294-10-9
    Average 90 stars, based on 1 article reviews
    tomato genome array genechip - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    other:

    Article Title: The drought-tolerant Solanum pennellii regulates leaf water loss and induces genes involved in amino acid and ethylene/jasmonate metabolism under dehydration
    Article Snippet: The resulting preparations were hybridized to GeneChip® Tomato Genome Array (Affymetrix) interrogating 10209 sequences.

    Article Title: Basal differences in the transcriptional profiles of tomato leaves associated with the presence/absence of the resistance geneMi-1and changes in these differences after infestation by the whiteflyBemisia tabaci
    Article Snippet: Gene expression of tomato leaves was performed using the Affymetrix GeneChipTM Tomato Genome Array, which contains over 10,000 probe sets to interrogate over 9200 tomato transcripts (http://www.affymetrix.com/products_services/arrays/specific/ tomato.affx).

    Article Title: Basal differences in the transcriptional profiles of tomato leaves associated with the presence/absence of the resistance geneMi-1and changes in these differences after infestation by the whiteflyBemisia tabaci
    Article Snippet: In the present work, the GeneChipTM Tomato Genome Array (Affymetrix®), with over 9200 transcripts, was used for the first time in an unbiased study to detect basal differences in the global gene expression of tomato associated with the presence/absence of the R gene Mi-1.

    Article Title: Basal differences in the transcriptional profiles of tomato leaves associated with the presence/absence of the resistance geneMi-1and changes in these differences after infestation by the whiteflyBemisia tabaci
    Article Snippet: In the present work, the GeneChipTM Tomato Genome Array (Affymetrix®) was used to compare the transcriptional profiles of Motelle (bearing Mi-1) and Moneymaker (lacking Mi-1) cultivars, both before and after B. tabaci infestation.

    Hybridization:

    Article Title: Transcriptome Analysis of Quantitative Resistance-Specific Response upon Ralstonia solanacearum Infection in Tomato
    Article Snippet: For each hybridization, RNA from 15 plants was isolated using an RNeasy Plant Mini Kit (Qiagen, Chatsworth, CA, USA) in accordance with the manufacturer’s protocol. .. Preparation of biotin-labeled probes from total RNA, hybridization with Affymetrix Tomato Genome Array GeneChip (Santa Clara, CA, USA), scanning and data collection were performed at an Affymetrix service provider (Kurabo Industries, Osaka, Japan). .. RNA quality and concentration were measured using an Agilent 2100 bioanalyzer (Agilent Technologies, Santa Clara, CA, USA), and 250 ng of total RNA was used for the following steps.

    Article Title: The Non-Pathogenic Fusarium oxysporum Fo47 Induces Distinct Responses in Two Closely Related Solanaceae Plants against the Pathogen Verticillium dahliae
    Article Snippet: .. The protocol of the GeneChip Hybridization, Wash, and Stain Kit was followed to hybridize the fragmented aRNA into the Affymetrix GeneChip Tomato Genome Array. .. GeneChips were hybridized in an Affymetrix GeneChip Hybridization Oven 645 for 16 h. Washing and staining were performed in an Affymetrix GeneChip Fluidics Station 450.

    Mutagenesis:

    Article Title: Transcriptomic analysis of tomato carpel development reveals alterations in ethylene and gibberellin synthesis during pat3/pat4 parthenocarpic fruit set
    Article Snippet: .. We employed the Affymetrix GeneChip Tomato Genome Array to compare the transcriptome of a non-parthenocarpic line, UC82, with that of the parthenocarpic line RP75/59 ( pat3/pat4 mutant). ..

    Gene Expression:

    Article Title: Transcriptome Analysis of Quantitative Resistance-Specific Response upon Ralstonia solanacearum Infection in Tomato
    Article Snippet: .. For global gene expression analysis, LS-89 and Ponderosa were inoculated with R. solanacearum (1.0×10 6 CFU/ml) or water as a control mock inoculation, and gene expression profiles at 1 dpi were analyzed using an Affymetrix Tomato Genome Array GeneChip representing over 9,200 tomato genes. ..

    Control:

    Article Title: Transcriptome Analysis of Quantitative Resistance-Specific Response upon Ralstonia solanacearum Infection in Tomato
    Article Snippet: .. For global gene expression analysis, LS-89 and Ponderosa were inoculated with R. solanacearum (1.0×10 6 CFU/ml) or water as a control mock inoculation, and gene expression profiles at 1 dpi were analyzed using an Affymetrix Tomato Genome Array GeneChip representing over 9,200 tomato genes. ..

    Staining:

    Article Title: The Non-Pathogenic Fusarium oxysporum Fo47 Induces Distinct Responses in Two Closely Related Solanaceae Plants against the Pathogen Verticillium dahliae
    Article Snippet: .. The protocol of the GeneChip Hybridization, Wash, and Stain Kit was followed to hybridize the fragmented aRNA into the Affymetrix GeneChip Tomato Genome Array. .. GeneChips were hybridized in an Affymetrix GeneChip Hybridization Oven 645 for 16 h. Washing and staining were performed in an Affymetrix GeneChip Fluidics Station 450.



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    Venn diagram . A . The number of genes in the <t>Tomato</t> <t>Affymetrix</t> <t>GeneChip</t> that changed in TIME (during UC-82 carpel development), TIME_RP75/59 (genes that changed throughout RP75/59 development, but in a different way than in UC-82) and RP75/59_UC82 (genes whose expression was different between the two lines, regardeless of whether they changed over time). B . The number of genes in the Tomato Affymetrix GeneChip that changed in emasculated stages, eTIME (changed between anthesis and 3DPA in UC-82), eTIME RP75/59 (changed in a different way between anthesis and 3DPA in RP75/59) and eUC-82vsRP75/59 (genes whose expression was different between the two lines).
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    Venn diagram . A . The number of genes in the <t>Tomato</t> <t>Affymetrix</t> <t>GeneChip</t> that changed in TIME (during UC-82 carpel development), TIME_RP75/59 (genes that changed throughout RP75/59 development, but in a different way than in UC-82) and RP75/59_UC82 (genes whose expression was different between the two lines, regardeless of whether they changed over time). B . The number of genes in the Tomato Affymetrix GeneChip that changed in emasculated stages, eTIME (changed between anthesis and 3DPA in UC-82), eTIME RP75/59 (changed in a different way between anthesis and 3DPA in RP75/59) and eUC-82vsRP75/59 (genes whose expression was different between the two lines).
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    Venn diagram . A . The number of genes in the <t>Tomato</t> <t>Affymetrix</t> <t>GeneChip</t> that changed in TIME (during UC-82 carpel development), TIME_RP75/59 (genes that changed throughout RP75/59 development, but in a different way than in UC-82) and RP75/59_UC82 (genes whose expression was different between the two lines, regardeless of whether they changed over time). B . The number of genes in the Tomato Affymetrix GeneChip that changed in emasculated stages, eTIME (changed between anthesis and 3DPA in UC-82), eTIME RP75/59 (changed in a different way between anthesis and 3DPA in RP75/59) and eUC-82vsRP75/59 (genes whose expression was different between the two lines).
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    Venn diagram . A . The number of genes in the <t>Tomato</t> <t>Affymetrix</t> <t>GeneChip</t> that changed in TIME (during UC-82 carpel development), TIME_RP75/59 (genes that changed throughout RP75/59 development, but in a different way than in UC-82) and RP75/59_UC82 (genes whose expression was different between the two lines, regardeless of whether they changed over time). B . The number of genes in the Tomato Affymetrix GeneChip that changed in emasculated stages, eTIME (changed between anthesis and 3DPA in UC-82), eTIME RP75/59 (changed in a different way between anthesis and 3DPA in RP75/59) and eUC-82vsRP75/59 (genes whose expression was different between the two lines).
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    Thermo Fisher tomato genome array probe set
    Venn diagram . A . The number of genes in the <t>Tomato</t> <t>Affymetrix</t> <t>GeneChip</t> that changed in TIME (during UC-82 carpel development), TIME_RP75/59 (genes that changed throughout RP75/59 development, but in a different way than in UC-82) and RP75/59_UC82 (genes whose expression was different between the two lines, regardeless of whether they changed over time). B . The number of genes in the Tomato Affymetrix GeneChip that changed in emasculated stages, eTIME (changed between anthesis and 3DPA in UC-82), eTIME RP75/59 (changed in a different way between anthesis and 3DPA in RP75/59) and eUC-82vsRP75/59 (genes whose expression was different between the two lines).
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    Image Search Results


    Venn diagram . A . The number of genes in the Tomato Affymetrix GeneChip that changed in TIME (during UC-82 carpel development), TIME_RP75/59 (genes that changed throughout RP75/59 development, but in a different way than in UC-82) and RP75/59_UC82 (genes whose expression was different between the two lines, regardeless of whether they changed over time). B . The number of genes in the Tomato Affymetrix GeneChip that changed in emasculated stages, eTIME (changed between anthesis and 3DPA in UC-82), eTIME RP75/59 (changed in a different way between anthesis and 3DPA in RP75/59) and eUC-82vsRP75/59 (genes whose expression was different between the two lines).

    Journal: BMC Plant Biology

    Article Title: Transcriptomic analysis of tomato carpel development reveals alterations in ethylene and gibberellin synthesis during pat3/pat4 parthenocarpic fruit set

    doi: 10.1186/1471-2229-9-67

    Figure Lengend Snippet: Venn diagram . A . The number of genes in the Tomato Affymetrix GeneChip that changed in TIME (during UC-82 carpel development), TIME_RP75/59 (genes that changed throughout RP75/59 development, but in a different way than in UC-82) and RP75/59_UC82 (genes whose expression was different between the two lines, regardeless of whether they changed over time). B . The number of genes in the Tomato Affymetrix GeneChip that changed in emasculated stages, eTIME (changed between anthesis and 3DPA in UC-82), eTIME RP75/59 (changed in a different way between anthesis and 3DPA in RP75/59) and eUC-82vsRP75/59 (genes whose expression was different between the two lines).

    Article Snippet: We employed the Affymetrix GeneChip Tomato Genome Array to compare the transcriptome of a non-parthenocarpic line, UC82, with that of the parthenocarpic line RP75/59 ( pat3/pat4 mutant).

    Techniques: Expressing

    Array annotation summary . A . Annotation process results for Tomato Affymetrix GeneChip. B . GO level distribution chart for Tomato Affymetrix GeneChip.

    Journal: BMC Plant Biology

    Article Title: Transcriptomic analysis of tomato carpel development reveals alterations in ethylene and gibberellin synthesis during pat3/pat4 parthenocarpic fruit set

    doi: 10.1186/1471-2229-9-67

    Figure Lengend Snippet: Array annotation summary . A . Annotation process results for Tomato Affymetrix GeneChip. B . GO level distribution chart for Tomato Affymetrix GeneChip.

    Article Snippet: We employed the Affymetrix GeneChip Tomato Genome Array to compare the transcriptome of a non-parthenocarpic line, UC82, with that of the parthenocarpic line RP75/59 ( pat3/pat4 mutant).

    Techniques: