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buffer kits illumina  (Illumina Inc)


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    Structured Review

    Illumina Inc buffer kits illumina
    Buffer Kits Illumina, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 97/100, based on 999 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/thruplex+dna-seq+12s+kit/Illumina+Tagment+DNA+Enzyme+and+Buffer+Small+Kit/pm34582804-617-236-238
    Average 97 stars, based on 999 article reviews
    buffer kits illumina - by Bioz Stars, 2026-11
    97/100 stars

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    Related Articles

    ATAC-seq:

    Article Title: Transient SUMOylation inhibition in human pre-adipocytes stably imprints a transcriptional beiging fate
    Article Snippet: .. Samples for assay for transposase-accessible chromatin sequencing (ATAC-seq) were prepared based on previously published protocols with the Illumina ATAC-seq library preparation kit (20034197) [ – ]. ..

    Article Title: PUS7 pseudouridylation of 7SK orchestrates human somatic cell reprogramming into iPS cells.
    Article Snippet: Briefly, 100,000 human iPS cells were dissociated for each replicate and mixed with 20 μl of Drosophila nuclei spike-in (Active Motif, 53154). .. Cells were permeabilized using the buffer provided in the ATAC-seq kit (Active Motif, 53150) and accessible chromatin regions were tagmented using Tn5 transposase (Illumina, 20034197). .. Genomic DNA was subsequently purified and sequencing libraries were generated by PCR amplification (ten cycles) with dual index primers (Illumina, FC-131-2004).

    other:

    Article Title: Uncovering essential RNA components of fusion oncoprotein condensates using bicon-seq.
    Article Snippet: Reagents and tools table Reagent/Resource Reference or Source Identifier or Catalog Number Experimental models dTAG-V5-NUP98::KDM5A Troester et al (2025) NA dTAG-GFP-V5-NUP98::KDM5A Troester et al (2025) NA GFP-V5-NUP98::KDM5A Zhang et al (2025) NA DDX6-dTAG MOLM13 Kodali et al (2024) NA LentiX 293T cells Takara bio 632180 U2OS ATCC HTB-96 Recombinant DNA LeGO-lnc-MONC Addgene #86966 LeGO-lnc-Gas5 This study NA pLenti-SFFV-dCas9-KRABMeCP2-P2A-Blasti Addgene #122205 psPAX2 Addgene #12260 pMD2.G Addgene #12259 Antibodies V5-Tag (D3H8Q) Rabbit mAb Cell Signaling Technology 13202S Rabbit IgG Diagenode C15410206 Mouse anti-CD11b/Mac-1 BV 421 (clone M1/70) BioLegend 101235 Mouse anti-Gr-1/Ly-6C PE-Cy7 (clone RB6-8C5) BioLegend 108415 Mouse anti-CD117/c-Kit APC (clone 2B8) BioLegend 105811 Anti-GFP Abcam ab290 Normal Rabbit IgG Cell Signaling Technology 2729 Rabbit anti-DDX6 Novus Biologicals NB200-192 Mouse anti-G3BP1 (F6X8V) Cell Signaling Technology 48372 Rabbit anti-PSPC1 (E7L8B) Cell Signaling Technology 65992 Rabbit anti-NPM1 Abcam ab15440 Rabbit anti-Coilin Abcam ab210785 Rabbit anti-TRAP220/MED1 Abcam ab64965 F(ab’)2-Goat anti-Rabbit IgG (H+ L) Cross-Adsorbed Secondary Antibody, Alexa Fluor 647 Invitrogen A-21246 14 The EMBO Journal © The Author(s) Reagent/Resource Reference or Source Identifier or Catalog Number Goat anti-Mouse IgG (H+ L) Cross-Adsorbed Secondary Antibody, Alexa Fluor 647 Invitrogen A-21235 Oligonucleotides and other sequence-based reagents PCR primers This study Dataset EV1 Chemicals, enzymes and other reagents Biotinylated isoxazole Sigma-Aldrich 900572 7-AAD Viability Staining Solution Invitrogen 00-6993-42 Annexin V Pacific Blue conjugate Invitrogen #A35122 Sodium arsenite Sigma-Aldrich S7400 DMSO Sigma-Aldrich D4540 dTAG-13 Sigma-Aldrich SML2601 DMEM, high glucose, no glutamine Gibco, Thermo Fisher Scientific 11510416 IMDM Gibco, Thermo Fisher Scientific 11504556 FBS Sigma-Aldrich F9665 Penicillin-Streptomycin Gibco, Thermo Fisher Scientific 11548876 L-Glutamine Gibco, Thermo Fisher Scientific 11500626 2-Mercaptoethanol Gibco, Fisher Scientific 11528926 SCF PeproTech, Thermo Fisher Scientific 250-03-10UG mIL-3 PeproTech, Thermo Fisher Scientific 213-13-10UG mIL-6 PeproTech, Thermo Fisher Scientific 216-16-10UG RPMI 1640 Gibco, Thermo Fisher Scientific 11544446 HEPES Sigma-Aldrich H0887 Sodium pyruvate Sigma-Aldrich S8636 DMEM, high glucose, GlutaMAX Supplement Gibco, Thermo Fisher Scientific 10566016 Polybrene Szabo-Scandic SACSC134220A 0.45 μM filter TPP TPP-99745 NaCl Carl Roth HN00.3 NP-40 alternative Millipore 492016 EDTA Sigma-Aldrich E9884 EGTA Millipore 324626 Glycerol Thermo Scientific Chemicals 158920025 Protease Inhibitor Cocktail Roche 11697498001 NaF Sigma-Aldrich 201154 PMSF Roche 10837091001 DTT Thermo Scientific A39255 TPCK Sigma-Aldrich T4376 Reagent/Resource Reference or Source Identifier or Catalog Number Pierce Bradford Protein Assay Kit Thermo Scientific 23200 NEB Monarch Total RNA Miniprep Kit NEB T1110 QuantSeq 3‘ mRNA-Seq Library Prep Kit Lexogen 015.96 Tris-HCl ITW reagents,AppliChem A1087,1000 MgCl2 Sigma-Aldrich M8266 Vanadyl Ribonucleoside Complex NEB S1402S RNA ChIP-IT Magnetic Chromatin Immunoprecipitation Kit Active Motif Cat#53024 Formaldehyde Sigma-Aldrich 252549 Trizol LS Reagent Invitrogen 10296010 Chloroform Merck 102447 Isopropanol Merck 190764 Linear acrylamide Thermo Scientific Chemicals J67830-XF RevertAid First Strand cDNA Synthesis Kit Thermo Scientific K1621 SsoAdvanced Universal SYBR Green Supermix Bio-Rad #1725271 RNAscope Multiplex Fluorescent v2 Assay ACD Bio-Techne 323100 Histofix Roth P087.6 Ethanol Sigma-Aldrich 51976 RNAscope probe-Mm-Gas5 Tocris Bioscience #561631 RNAscope probe-Mm-Malat1 Tocris Bioscience #313391 RNAscope negative control probe Tocris Bioscience #320871 TSA-Cy3 Tocris Bioscience #7527 Polyethylenimine Merck 408727 Spermidine Sigma-Aldrich S2626 Digitonin Sigma-Aldrich D141 BioMagPlus Concanavalin A Polysciences 86057 RNase A (DNase-free) ITW Reagents A3832,0050 AmPure XP Beads Beckman Coulter A63880 NEBNext Ultra II DNA Library Prep Kit for Illumina New England Biolabs E7645S NEBNext Multiplex Oligos for Illumina (Dual Index Set 1) New England Biolabs E7600S Triton X-100 Sigma-Aldrich X100 cOmplete, EDTA-free Protease Inhibitor Cocktail Roche 04693132001 pAG-Mnase In-house NA Monarch PCR & DNA Cleanup Kit New England Biolabs T1030 IDTE pH 7.5 (1X TE Solution) Integrated DNA Technologies 11-05-01-15 Illumina Tagment DNA Enzyme and Buffer Small Kit Illumina 20034197 © The Author(s) The EMBO Journal 15 Reagent/Resource Reference or Source Identifier or Catalog Number Illumina DNA/RNA UD Indexes Set A, Tagmentation Illumina 20091654 NEBNext High-Fidelity 2X PCR master mix New England Biolabs M0541S MinElute PCR Purification Kit Qiagen 28004 SYBR Green I dye Invitrogen S7563 IGEPAL CA-630 Sigma-Aldrich I3021 Histofix Carl ROTH P087.6 Triton X-100 Sigma-Aldrich T8787 DPBS Gibco 14190169 RNAscope Protease III ACD Bio-Techne 322337 RNAscope Wash buffer ACD Bio-Techne 320058 GFP-Booster ATTO488 ChromoTek Gba488-100 Aqua-Poly/Mount antifade medium Polysciences 18606 Normal goat serum Invitrogen 31872 1.5H glass bottoms Ibidi 80827 (3-Mercaptopropyl) trimethoxysilane Sigma-Aldrich 175617 Mal-PEG3-NH2 TFA MedChemExpress YHW190796A Dibenzocyclooctyne-Nhydroxysuccinimidyl ester Sigma-Aldrich 761524 Ac4ManNAz TargetMol T14093 Attofluor Cell Chamber Invitrogen A7816 Software ForeCyte software Essen Bioscience, Ann Arbor, Michigan, USA NA GraphPad Prism 10 https://www.graphpad.

    Lysis:

    Article Title: Long-term immunoprophylaxis by TLR9 ligand mediates macrophage-ILC cross-talk against respiratory viral infection
    Article Snippet: .. Cells were lysed in cold lysis buffer [10 mM tris-HCl (pH 7.4), 10 mM NaCl, 3 mM MgCl 2 , and 0.1% IGEPAL CA-630] on ice for 10 min. After centrifugation, nuclei pellets were resuspended with 50 μl of transposase reaction mix [25 μl of Tagment DNA buffer (Illumina), 2.5 μl of Tagment DNA enzyme (Illumina), and 22.5 μl of water], incubated at 37°C for 35 min, and were purified with a MinElute PCR Purification Kit (QIAGEN). .. After the optimization of polymerase chain reaction (PCR) cycle number using SYBR Green I nucleic acid gel stain (Takara Bio), transposed fragments were amplified using NEBNext High Fidelity 2× PCR Master mix and index primers and were purified with a MinElute PCR Purification Kit (QIAGEN).

    Centrifugation:

    Article Title: Long-term immunoprophylaxis by TLR9 ligand mediates macrophage-ILC cross-talk against respiratory viral infection
    Article Snippet: .. Cells were lysed in cold lysis buffer [10 mM tris-HCl (pH 7.4), 10 mM NaCl, 3 mM MgCl 2 , and 0.1% IGEPAL CA-630] on ice for 10 min. After centrifugation, nuclei pellets were resuspended with 50 μl of transposase reaction mix [25 μl of Tagment DNA buffer (Illumina), 2.5 μl of Tagment DNA enzyme (Illumina), and 22.5 μl of water], incubated at 37°C for 35 min, and were purified with a MinElute PCR Purification Kit (QIAGEN). .. After the optimization of polymerase chain reaction (PCR) cycle number using SYBR Green I nucleic acid gel stain (Takara Bio), transposed fragments were amplified using NEBNext High Fidelity 2× PCR Master mix and index primers and were purified with a MinElute PCR Purification Kit (QIAGEN).

    Incubation:

    Article Title: Long-term immunoprophylaxis by TLR9 ligand mediates macrophage-ILC cross-talk against respiratory viral infection
    Article Snippet: .. Cells were lysed in cold lysis buffer [10 mM tris-HCl (pH 7.4), 10 mM NaCl, 3 mM MgCl 2 , and 0.1% IGEPAL CA-630] on ice for 10 min. After centrifugation, nuclei pellets were resuspended with 50 μl of transposase reaction mix [25 μl of Tagment DNA buffer (Illumina), 2.5 μl of Tagment DNA enzyme (Illumina), and 22.5 μl of water], incubated at 37°C for 35 min, and were purified with a MinElute PCR Purification Kit (QIAGEN). .. After the optimization of polymerase chain reaction (PCR) cycle number using SYBR Green I nucleic acid gel stain (Takara Bio), transposed fragments were amplified using NEBNext High Fidelity 2× PCR Master mix and index primers and were purified with a MinElute PCR Purification Kit (QIAGEN).

    Article Title: Transient SUMOylation inhibition in human pre-adipocytes stably imprints a transcriptional beiging fate
    Article Snippet: .. The supernatant was removed and the nuclei pellet was resuspended in 50 μl transposition mixture [25 μl Tagment DNA Buffer (1× final, Illumina, 20034197), 2.5 μl Tagment Tn5 Transposase (100 nM final, Illumina, 20034197), 16.5 μl 1× PBS, 0.5 μl 1% Digitonin (0.01% final), 0.5 μl 10% tween 20 (0.1% final)] and incubated at 37°C for 30 min shaking at 1000 rpm. .. The tagmented DNA was purified with the Zymo DNA Clean and Concentrator-5 Kit (Zymo, D4014) and eluted in 21 μl Elution Buffer.

    Purification:

    Article Title: Long-term immunoprophylaxis by TLR9 ligand mediates macrophage-ILC cross-talk against respiratory viral infection
    Article Snippet: .. Cells were lysed in cold lysis buffer [10 mM tris-HCl (pH 7.4), 10 mM NaCl, 3 mM MgCl 2 , and 0.1% IGEPAL CA-630] on ice for 10 min. After centrifugation, nuclei pellets were resuspended with 50 μl of transposase reaction mix [25 μl of Tagment DNA buffer (Illumina), 2.5 μl of Tagment DNA enzyme (Illumina), and 22.5 μl of water], incubated at 37°C for 35 min, and were purified with a MinElute PCR Purification Kit (QIAGEN). .. After the optimization of polymerase chain reaction (PCR) cycle number using SYBR Green I nucleic acid gel stain (Takara Bio), transposed fragments were amplified using NEBNext High Fidelity 2× PCR Master mix and index primers and were purified with a MinElute PCR Purification Kit (QIAGEN).

    Polymerase Chain Reaction:

    Article Title: Long-term immunoprophylaxis by TLR9 ligand mediates macrophage-ILC cross-talk against respiratory viral infection
    Article Snippet: .. Cells were lysed in cold lysis buffer [10 mM tris-HCl (pH 7.4), 10 mM NaCl, 3 mM MgCl 2 , and 0.1% IGEPAL CA-630] on ice for 10 min. After centrifugation, nuclei pellets were resuspended with 50 μl of transposase reaction mix [25 μl of Tagment DNA buffer (Illumina), 2.5 μl of Tagment DNA enzyme (Illumina), and 22.5 μl of water], incubated at 37°C for 35 min, and were purified with a MinElute PCR Purification Kit (QIAGEN). .. After the optimization of polymerase chain reaction (PCR) cycle number using SYBR Green I nucleic acid gel stain (Takara Bio), transposed fragments were amplified using NEBNext High Fidelity 2× PCR Master mix and index primers and were purified with a MinElute PCR Purification Kit (QIAGEN).



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