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Bioedit Company tblastn program
Tblastn Program, supplied by Bioedit Company, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/tblastn+programs/tblastn+program/pm39791875-123-5-35
Average 90 stars, based on 1 article reviews
tblastn program - by Bioz Stars, 2026-10
90/100 stars

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Related Articles

Sequencing:

Article Title: Coinducible Catabolism of 1-Naphthol via Synergistic Regulation of the Initial Hydroxylase Genes in Sphingobium sp. Strain B2
Article Snippet: .. To clone the genes involved in 1-naphthol catabolism in strain B2, sequences of previously reported enzymes related to downstream catabolism of 1-naphthol were subjected to local BLAST searches against the genome sequence of strain B2 (GenBank accession number {"type":"entrez-nucleotide","attrs":{"text":"VDBZ00000000","term_id":"1710613412","term_text":"VDBZ00000000"}} VDBZ00000000 ) using the tblastn program in BioEdit, because we supposed that enzymes for the downstream catabolism of 1-naphthol are conserved. ..

Article Title: Cultivation and mating of the truffle Tuber japonicum in plantations of ectomycorrhizal Quercus serrata seedlings.
Article Snippet: .. A local BLAST using the tblastn program was conducted utilizing the amino acid sequence of the MAT1-1-1 gene of T. borchii (PUU82705) as a query to identify a potential MAT1-1-1 gene with high affinity, using BioEdit Ver. ..

Article Title: Characterization and catalytic mechanism of a direct demethylsulfide hydrolase for catabolism of the methylthiol-s-triazine prometryn.
Article Snippet: • ProA from the strain JW-1 was successfully identified and characterized.. • ProA catalyzes the conversion of prometryne to 2-hydroxyprometryne and

Article Title: Identification, molecular characterization and expression of JAZ genes in Lycoris aurea
Article Snippet: Here, by using BioEdit software ( http://www.mbio.ncsu.edu/BioEdit/bioedit.html ), a local library for L . aurea non-redundant unigenes assembled from the two cDNA libraries was created. .. Each JAZ protein sequence of Arabidopsis and rice was locally Blasted against the library using the tblastn program in BioEdit. ..

Article Title: Selection of Reference Genes for Gene Expression Normalization in Peucedanum praeruptorum Dunn under Abiotic Stresses, Hormone Treatments and Different Tissues
Article Snippet: .. And then, a local BLAST was conducted using the tblastn program in Bioedit Sequence Alignment Editor. ..

Article Title: Cloning and characterisation of JAZ gene family in Hevea brasiliensis.
Article Snippet: Mechanical wounding or treatment with exogenous jasmonates (JA) induces differentiation of the laticifer in Hevea brasiliensis.. JA is a key signal for latex biosynthesis and wounding response in the rubber tree.. Identification of JAZ (jasmonate ZIMdomain) family of proteins that repress JA responses has facilitated rapid progress in understanding how this lipid-derived hormone controls gene expression and related physiological processes in plants.

other:

Article Title: A genetic linkage map of Pleurotus tuoliensis integrated with physical mapping of the de novo sequenced genome and the mating type loci
Article Snippet: Homologs of pheromone precursors were searched among the genome of P. tuoliensis via tBlastn of BioEdit program [ ].

RNA sequencing:

Article Title: Selection of Reference Genes for qRT-PCR Analysis in Medicinal Plant Glycyrrhiza under Abiotic Stresses and Hormonal Treatments
Article Snippet: .. Protein sequences of these candidates were downloaded from the NCBI database; nucleotide sequences of these genes were obtained from G. uralensis genome ( http://ngs-data-archive.psc.riken.jp/Gur-genome/index.pl #) and G. inflata RNA-Seq database (SRA accession: PRJNA574093) using TBLASTN program in BioEdit software. .. Four new generation candidate genes ( ABCC2 , COPS3 , CS, and R3HDM2 ) were selected from the RNA-seq data and expressed consistently in different RNA-Seq samples. qRT-PCR primers were designed using PrimerQuest Tool, INTEGRATED DNA TECHNOLOGIES (IDT) ( https://sg.idtdna.com/Primerquest/Home/Index ).



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