Review



t-sne plots  (Muris Inc)

 
  • Logo
  • About
  • News
  • Press Release
  • Team
  • Advisors
  • Partners
  • Contact
  • Bioz Stars
  • Bioz vStars
    • 90
      Buy from Supplier

    Structured Review

    Muris Inc t-sne plots
    T Sne Plots, supplied by Muris Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/t-sne+plot/t+sne+plots/pm39468010-184-34-39
    Average 90 stars, based on 1 article reviews
    t-sne plots - by Bioz Stars, 2026-10
    90/100 stars

    Images

    Related Articles

    other:

    Article Title: Ror2 signaling regulated by differential Wnt proteins determines pathological fate of muscle mesenchymal progenitors
    Article Snippet: Fig. 4 Wnt11 is involved in regulating MP proliferation, differentiation, or cellular senescence. a Expression of Wnt11 was projected on t-SNE plots obtained from Tabula Muris.

    Article Title: Localization of aquaglyceroporins in human and murine white adipose tissue.
    Article Snippet: The glycerol channel AQP7 facilitates glycerol efflux from adipose tissue (AT), and AQP7 deficiency has been suggested to promote obesity.. However, the release of glycerol from AT is not fully blocked in AQP7-deficient mice, which suggests that either alternative glycerol channels are present in AT or significant simple diffusion of glycerol occurs.. Previous investigations of the expression of other aquaglyceroporins (AQP3, AQP9, AQP10) than AQP7 in AT are contradictory.

    Article Title: Ror2 signaling regulated by differential Wnt proteins determines pathological fate of muscle mesenchymal progenitors.
    Article Snippet: It is expected that the molecular mechanisms underlying this crosstalk will be elucidated by Fig. 4 Wnt11 is involved in regulating MP proliferation, differentiation, or cellular senescence. a Expression of Wnt11 was projected on t-SNE plots obtained from Tabula Muris.

    Article Title: Gpr125 is a unifying hallmark of multiple mammary progenitors coupled to tumor latency
    Article Snippet: The t-SNE plots of Fig. , panel D were generated using available data of whole mammary gland single cells from Tabula Muris ( https://tabula-muris.ds.czhub.org/ ).

    Microarray:

    Article Title: TIM4 expression by dendritic cells mediates uptake of tumor-associated antigens and anti-tumor responses
    Article Snippet: .. Data are expressed as mean ± SD with nLung n = 4, KP(l) n = 3. b Volcano plot showing the fold change of genes encoding scavenger receptors (significantly modulated genes are depicted in red and blue, using a q -value < 5%, a false discovery rate (FDR) ≤ 5% and a fold change ≥2 or ≤2), using the Significance Analysis of Microarray (SAM) algorithm. c The dot-plot shows the relative abundance of genes in b using a color and size scale of linear expression values. d T-distributed stochastic neighbor embedding (tSNE) plots of single cells expression profiles in mouse lungs (Tabula Muris). ..

    Expressing:

    Article Title: TIM4 expression by dendritic cells mediates uptake of tumor-associated antigens and anti-tumor responses
    Article Snippet: .. Data are expressed as mean ± SD with nLung n = 4, KP(l) n = 3. b Volcano plot showing the fold change of genes encoding scavenger receptors (significantly modulated genes are depicted in red and blue, using a q -value < 5%, a false discovery rate (FDR) ≤ 5% and a fold change ≥2 or ≤2), using the Significance Analysis of Microarray (SAM) algorithm. c The dot-plot shows the relative abundance of genes in b using a color and size scale of linear expression values. d T-distributed stochastic neighbor embedding (tSNE) plots of single cells expression profiles in mouse lungs (Tabula Muris). ..

    Article Title: Ceria nanoparticles ameliorate white matter injury after intracerebral hemorrhage: microglia-astrocyte involvement in remyelination
    Article Snippet: .. Lens: × 7500, × 15,000; Scale bar: 5 μm (white), 2 μm (yellow). c tSNE plots of brain myeloid cells (Tabula Muris). d Expression of C3aR1 genes in microglia and macrophage (Tabula Muris). e Representative images of C3aR and Iba1 double immunostaining in brain sections. ..

    Double Immunostaining:

    Article Title: Ceria nanoparticles ameliorate white matter injury after intracerebral hemorrhage: microglia-astrocyte involvement in remyelination
    Article Snippet: .. Lens: × 7500, × 15,000; Scale bar: 5 μm (white), 2 μm (yellow). c tSNE plots of brain myeloid cells (Tabula Muris). d Expression of C3aR1 genes in microglia and macrophage (Tabula Muris). e Representative images of C3aR and Iba1 double immunostaining in brain sections. ..



    Similar Products

    t-sne plots  (GraphPad Software Inc)
    90
    GraphPad Software Inc t-sne plots
    T Sne Plots, supplied by GraphPad Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/t-sne+plot/t+sne+plots/pm40112155-74-3-40
    Average 90 stars, based on 1 article reviews
    t-sne plots - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    t-sne plots  (MathWorks Inc)
    90
    MathWorks Inc t-sne plots
    T Sne Plots, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/t-sne+plot/pmc12088720-150-22-28
    Average 90 stars, based on 1 article reviews
    t-sne plots - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    t sne plot  (10X Genomics)
    86
    10X Genomics t sne plot
    T Sne Plot, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/t-sne+plot/plot+sne+t/pm40056978-441-81-27
    Average 86 stars, based on 1 article reviews
    t sne plot - by Bioz Stars, 2026-10
    86/100 stars
    		  Buy from Supplier
    t-sne plots  (Muris Inc)
    90
    Muris Inc t-sne plots
    T Sne Plots, supplied by Muris Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/t-sne+plot/t+sne+plots/pm39468010-184-34-39
    Average 90 stars, based on 1 article reviews
    t-sne plots - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    t-sne 2d plot  (MathWorks Inc)
    90
    MathWorks Inc t-sne 2d plot
    T Sne 2d Plot, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/t-sne+plot/pm39030477-122-46-55
    Average 90 stars, based on 1 article reviews
    t-sne 2d plot - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    t-distributed stochastic neighbor embedding (t-sne) 2d plot  (MathWorks Inc)
    90
    MathWorks Inc t-distributed stochastic neighbor embedding (t-sne) 2d plot
    Automatic analysis of the 2P microscopy images of infected cells using SARS-CoV-2 variants D614G and B.1.1.7. A Purple contours indicate the areas automatically defined as particles during this analysis. B , C , E , F Spider charts showing the effects of B variant, C virus titer, E dye concentration, and F photomultiplier tube (PMT) relative voltage on the range-normalized values of seven different image parameters obtained from 2P microscopy images. The error bars for the spider charts can be found in Supplementary Fig. 7. D The image parameter called “relative signal area” shows a significant increase at virus titers higher than TCID 50 10 –3 mL −1 . G The image parameter called “image mean intensity” for the two studied variants at high virus titer (TCID 50 > 10 –3 mL −1 ) at 0.05 μM and 0.5 μM dye concentration. H t -Distributed <t>stochastic</t> neighbor embedding (t-SNE) <t>2D</t> plot obtained from all the seven image parameters recorded at 0.5 µM dye concentration shows three clusters depending on the virus variant and titer. Inset shows that the three groups, namely no or low infection, infection with D614G variant, and infection with B.1.1.7 variant are clearly separated along the first dimension. I Classification of the images corresponding to different variants at various virus titer in three clusters by seven-dimensional Gaussian mixture model clustering (error bars show standard deviation; significance levels as * p ≤ 0.1; ** p ≤ 0.05; *** p ≤ 0.01.)
    T Distributed Stochastic Neighbor Embedding (T Sne) 2d Plot, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/t-sne+plot/pmc11264913-104-47-56
    Average 90 stars, based on 1 article reviews
    t-distributed stochastic neighbor embedding (t-sne) 2d plot - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    scatter plot based on t-sne embedding  (Janssen)
    90
    Janssen scatter plot based on t-sne embedding
    Automatic analysis of the 2P microscopy images of infected cells using SARS-CoV-2 variants D614G and B.1.1.7. A Purple contours indicate the areas automatically defined as particles during this analysis. B , C , E , F Spider charts showing the effects of B variant, C virus titer, E dye concentration, and F photomultiplier tube (PMT) relative voltage on the range-normalized values of seven different image parameters obtained from 2P microscopy images. The error bars for the spider charts can be found in Supplementary Fig. 7. D The image parameter called “relative signal area” shows a significant increase at virus titers higher than TCID 50 10 –3 mL −1 . G The image parameter called “image mean intensity” for the two studied variants at high virus titer (TCID 50 > 10 –3 mL −1 ) at 0.05 μM and 0.5 μM dye concentration. H t -Distributed <t>stochastic</t> neighbor embedding (t-SNE) <t>2D</t> plot obtained from all the seven image parameters recorded at 0.5 µM dye concentration shows three clusters depending on the virus variant and titer. Inset shows that the three groups, namely no or low infection, infection with D614G variant, and infection with B.1.1.7 variant are clearly separated along the first dimension. I Classification of the images corresponding to different variants at various virus titer in three clusters by seven-dimensional Gaussian mixture model clustering (error bars show standard deviation; significance levels as * p ≤ 0.1; ** p ≤ 0.05; *** p ≤ 0.01.)
    Scatter Plot Based On T Sne Embedding, supplied by Janssen, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/t-sne+plot/scatter+plot+based+on+t+sne+embedding/10__1109_slash_tvcg__2023__3337642-121-14-0
    Average 90 stars, based on 1 article reviews
    scatter plot based on t-sne embedding - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    t-sne plots and phenotype profile maps  (Visiopharm AS)
    90
    Visiopharm AS t-sne plots and phenotype profile maps
    Automatic analysis of the 2P microscopy images of infected cells using SARS-CoV-2 variants D614G and B.1.1.7. A Purple contours indicate the areas automatically defined as particles during this analysis. B , C , E , F Spider charts showing the effects of B variant, C virus titer, E dye concentration, and F photomultiplier tube (PMT) relative voltage on the range-normalized values of seven different image parameters obtained from 2P microscopy images. The error bars for the spider charts can be found in Supplementary Fig. 7. D The image parameter called “relative signal area” shows a significant increase at virus titers higher than TCID 50 10 –3 mL −1 . G The image parameter called “image mean intensity” for the two studied variants at high virus titer (TCID 50 > 10 –3 mL −1 ) at 0.05 μM and 0.5 μM dye concentration. H t -Distributed <t>stochastic</t> neighbor embedding (t-SNE) <t>2D</t> plot obtained from all the seven image parameters recorded at 0.5 µM dye concentration shows three clusters depending on the virus variant and titer. Inset shows that the three groups, namely no or low infection, infection with D614G variant, and infection with B.1.1.7 variant are clearly separated along the first dimension. I Classification of the images corresponding to different variants at various virus titer in three clusters by seven-dimensional Gaussian mixture model clustering (error bars show standard deviation; significance levels as * p ≤ 0.1; ** p ≤ 0.05; *** p ≤ 0.01.)
    T Sne Plots And Phenotype Profile Maps, supplied by Visiopharm AS, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/t-sne+plot/t+sne+plots+and+phenotype+profile+maps/pmc10757256-45-11-5
    Average 90 stars, based on 1 article reviews
    t-sne plots and phenotype profile maps - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    t-sne plots  (Visiopharm AS)
    90
    Visiopharm AS t-sne plots
    Automatic analysis of the 2P microscopy images of infected cells using SARS-CoV-2 variants D614G and B.1.1.7. A Purple contours indicate the areas automatically defined as particles during this analysis. B , C , E , F Spider charts showing the effects of B variant, C virus titer, E dye concentration, and F photomultiplier tube (PMT) relative voltage on the range-normalized values of seven different image parameters obtained from 2P microscopy images. The error bars for the spider charts can be found in Supplementary Fig. 7. D The image parameter called “relative signal area” shows a significant increase at virus titers higher than TCID 50 10 –3 mL −1 . G The image parameter called “image mean intensity” for the two studied variants at high virus titer (TCID 50 > 10 –3 mL −1 ) at 0.05 μM and 0.5 μM dye concentration. H t -Distributed <t>stochastic</t> neighbor embedding (t-SNE) <t>2D</t> plot obtained from all the seven image parameters recorded at 0.5 µM dye concentration shows three clusters depending on the virus variant and titer. Inset shows that the three groups, namely no or low infection, infection with D614G variant, and infection with B.1.1.7 variant are clearly separated along the first dimension. I Classification of the images corresponding to different variants at various virus titer in three clusters by seven-dimensional Gaussian mixture model clustering (error bars show standard deviation; significance levels as * p ≤ 0.1; ** p ≤ 0.05; *** p ≤ 0.01.)
    T Sne Plots, supplied by Visiopharm AS, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/t-sne+plot/t+sne+plots/pmc10757256-121-6-0
    Average 90 stars, based on 1 article reviews
    t-sne plots - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier

    Image Search Results


    Automatic analysis of the 2P microscopy images of infected cells using SARS-CoV-2 variants D614G and B.1.1.7. A Purple contours indicate the areas automatically defined as particles during this analysis. B , C , E , F Spider charts showing the effects of B variant, C virus titer, E dye concentration, and F photomultiplier tube (PMT) relative voltage on the range-normalized values of seven different image parameters obtained from 2P microscopy images. The error bars for the spider charts can be found in Supplementary Fig. 7. D The image parameter called “relative signal area” shows a significant increase at virus titers higher than TCID 50 10 –3 mL −1 . G The image parameter called “image mean intensity” for the two studied variants at high virus titer (TCID 50 > 10 –3 mL −1 ) at 0.05 μM and 0.5 μM dye concentration. H t -Distributed stochastic neighbor embedding (t-SNE) 2D plot obtained from all the seven image parameters recorded at 0.5 µM dye concentration shows three clusters depending on the virus variant and titer. Inset shows that the three groups, namely no or low infection, infection with D614G variant, and infection with B.1.1.7 variant are clearly separated along the first dimension. I Classification of the images corresponding to different variants at various virus titer in three clusters by seven-dimensional Gaussian mixture model clustering (error bars show standard deviation; significance levels as * p ≤ 0.1; ** p ≤ 0.05; *** p ≤ 0.01.)

    Journal: Cellular & Molecular Biology Letters

    Article Title: Monitoring correlates of SARS-CoV-2 infection in cell culture using a two-photon-active calcium-sensitive dye

    doi: 10.1186/s11658-024-00619-0

    Figure Lengend Snippet: Automatic analysis of the 2P microscopy images of infected cells using SARS-CoV-2 variants D614G and B.1.1.7. A Purple contours indicate the areas automatically defined as particles during this analysis. B , C , E , F Spider charts showing the effects of B variant, C virus titer, E dye concentration, and F photomultiplier tube (PMT) relative voltage on the range-normalized values of seven different image parameters obtained from 2P microscopy images. The error bars for the spider charts can be found in Supplementary Fig. 7. D The image parameter called “relative signal area” shows a significant increase at virus titers higher than TCID 50 10 –3 mL −1 . G The image parameter called “image mean intensity” for the two studied variants at high virus titer (TCID 50 > 10 –3 mL −1 ) at 0.05 μM and 0.5 μM dye concentration. H t -Distributed stochastic neighbor embedding (t-SNE) 2D plot obtained from all the seven image parameters recorded at 0.5 µM dye concentration shows three clusters depending on the virus variant and titer. Inset shows that the three groups, namely no or low infection, infection with D614G variant, and infection with B.1.1.7 variant are clearly separated along the first dimension. I Classification of the images corresponding to different variants at various virus titer in three clusters by seven-dimensional Gaussian mixture model clustering (error bars show standard deviation; significance levels as * p ≤ 0.1; ** p ≤ 0.05; *** p ≤ 0.01.)

    Article Snippet: Seven parameters characterizing the detected particles on the images were defined for each image: (i) relative signal area, (ii) image mean intensity, (iii) mean of the threshold area, (iv) maximum particle intensity, (v) average particle size, (vi) particle percentage area, and (vii) particle mean intensity. t -Distributed stochastic neighbor embedding (t-SNE) 2D plot was obtained in MATLAB using the built-in “tsne” function with default random number generation, a perplexity value of 10, and exaggeration value of 50 on all seven parameters of images acquired with 0.5 μM dye concentration (Supplementary Fig. 12).

    Techniques: Microscopy, Infection, Variant Assay, Virus, Concentration Assay, Standard Deviation