other:Article Title: Evolution of transcriptional regulation of histidine metabolism in Gram-positive bacteria
Article Snippet: 168 fig|1297581.3 Anoxybacillus flavithermus AK1 fig|742743.3 Dialister succinatiphilus YIT 11850 fig|1234409.3 Catellicoccus marimammalium M35/04/3 fig|742737.3 Clostridium hathewayi WAL-18680 fig|515620.4 Eubacterium eligens ATCC 27750 fig|1121114.4 Blautia producta ATCC 27340 fig|1122925.3 Paenibacillus sanguinis 2301083 = DSM 16941 fig|1121468.4 Desulfovirgula thermocuniculi DSM 16036 fig|1408.101 Bacillus pumilus strain TUAT1 fig|991789.4 Clostridium propionicum DSM 1682 fig|471872.6 Streptococcus infantarius subsp. infantarius ATCC BAA-102 fig|1121335.3 Clostridium stercorarium subsp. stercorarium DSM 8532 fig|1387557.3 Caldicellulosiruptor sp. Wai35.B1 fig|868595.4 Desulfotomaculum carboxydivorans CO-1-SRB fig|1262650.3 Staphylococcus xylosus NJ fig|301302.4 Roseburia faecis strain M72 fig|596315.3 Peptostreptococcus stomatis DSM 17678 fig|1158608.4 Enterococcus haemoperoxidus ATCC BAA-382 fig|460384.4 Clostridium lavalense strain NLAE-zl-G277 fig|904314.5 Staphylococcus pettenkoferi VCU012 fig|411463.4 Eubacterium ventriosum ATCC 27560 fig|1120992.3 Anaeromusa acidaminophila DSM 3853 fig|656519.3 Halanaerobium sp. sapolanicus fig|610130.3 Clostridium saccharolyticum WM1 fig|632335.8 Caldicellulosiruptor kristjanssonii 177R1B fig|1234664.3 Geobacillus caldoxylosilyticus CIC9 fig|335541.7 Syntrophomonas wolfei subsp. wolfei str.
Article Title: Full-length 16S rRNA gene amplicon analysis of human gut microbiota using MinION™ nanopore sequencing confers species-level resolution
Article Snippet: 97-27 GCA_000008505.1 118 Bacillus hemicellulosilyticus JCM 9152 GCA_000513115.1 118 Bacillus licheniformis DSM 13 = ATCC 14580 GCA_000011645.1 118 Oceanobacillus iheyensis HTE831 GCA_000011245.1 jt 167 Streptococcus mutans UA159 GCA_000007465.2 119 Streptococcus sobrinus DSM 20742 = ATCC 33478 GCA_000686605.1 118 Streptococcus macacae NCTC 11558 GCA_000187995.3 ju 239 Streptococcus mutans UA159 GCA_000007465.2 222 Enterococcus faecalis V583 GCA_000007785.1 222 Streptomyces cinnamoneus GCA_001885705.1 189 Enterococcus asini ATCC 700915 GCA_000407365.1 189 Enterococcus canis NBRC 100695 GCA_001544375.1 189 Enterococcus casseliflavus EC20 GCA_000157355.2 189 Enterococcus cecorum GCA_001318405.1 189 Enterococcus columbae DSM 7374 = ATCC 51263 GCA_000406925.1 189 Enterococcus dispar ATCC 51266 GCA_000406945.1 189 Enterococcus faecium DO GCA_000174395.2 189 Enterococcus gilvus ATCC BAA-350 GCA_000407545.1 189 Enterococcus haemoperoxidus ATCC BAA-382 GCA_000407165.1 189 Enterococcus hermanniensis GCA_001885945.1 189 Enterococcus hirae ATCC 9790 GCA_000271405.2 189 Enterococcus italicus DSM 15952 GCA_000185365.1 189 Enterococcus malodoratus ATCC 43197 GCA_000407185.1 189 Enterococcus massiliensis GCA_001050095.1 189 Enterococcus mundtii QU 25 GCA_000504125.1 189 Enterococcus pallens ATCC BAA-351 GCA_000407485.1 189 Enterococcus phoeniculicola ATCC BAA-412 GCA_000407505.1 189 Enterococcus pseudoavium NBRC 100491 GCA_001544295.1 189 Enterococcus rivorum GCA_001742285.1 189 Enterococcus saccharolyticus subsp. saccharolyticus ATCC 43076 GCA_000407285.1 189 Enterococcus sulfureus ATCC 49903 GCA_000407605.1 189 Enterococcus thailandicus GCA_001652875.1 189 Vagococcus fluvialis bH819 GCA_900163795.1 189 Vagococcus lutrae LBD1 GCA_000498295.1 189 Vagococcus penaei GCA_001998885.1 jv 215 Clostridium butyricum GCA_001456065.2 204 Clostridium beijerinckii GCA_000833105.2 204 Clostridium puniceum GCA_002006345.1 204 Clostridium saccharobutylicum DSM 13864 GCA_000473995.1 204 Clostridium saccharoperbutylacetonicum N1-4_28HMT_29 GCA_000340885.1 200 Clostridium chromiireducens GCA_002029255.1 jw 288 Staphylococcus capitis subsp. capitis GCA_001028645.1 288 Staphylococcus epidermidis ATCC 12228 GCA_000007645.1 285 Staphylococcus haemolyticus JCSC1435 GCA_000009865.1 284 Staphylococcus cohnii subsp. cohnii GCA_000972575.1 jx 256 Rhodobacter sphaeroides 2.4.1 GCA_000012905.2 226 Rhodobacter sphaeroides ATCC 17025 GCA_000016405.1 194 Defluviimonas alba GCA_001620265.1 jy 174 Escherichia coli IAI39 GCA_000026345.1 174 Escherichia coli O104_3AH4 str.
Article Title: Hidden diversity in Enterococcus faecalis revealed by CRISPR2 screening: eco-evolutionary insights into a novel subspecies
Article Snippet: Carbohydrate transport and metabolism , UAW_01409 , PTS system, beta-glucoside-specific IIABC component/ BglF-like , 619 , 59.2 , 1876 , 0 , R2QSR1 , Enterococcus haemoperoxidus ATCC BAA-382 , .
Article Title: Full-length 16S rRNA gene amplicon analysis of human gut microbiota using MinION™ nanopore sequencing confers species-level resolution
Article Snippet: 301 GCA_000006925.2 285 Tumebacillus flagellatus GCA_000714935.1 264 Erwinia iniecta GCA_001267535.1 244 Cronobacter sakazakii GCA_000982825.1 244 Erwinia toletana DAPP-PG 735 GCA_000336255.1 3y 379 Lactobacillus gasseri ATCC 33323 = JCM 1131 GCA_000014425.1 365 Lactobacillus hominis DSM 23910 = CRBIP 24.179 GCA_000296835.1 282 Lactobacillus psittaci DSM 15354 GCA_000425905.1 3z 217 Deinococcus radiodurans R1 GCA_000008565.1 138 Deinococcus gobiensis I-0 GCA_000252445.1 129 Deinococcus marmoris DSM 12784 GCA_000701405.1 129 Deinococcus swuensis GCA_000800395.1 3A 238 Deinococcus radiodurans R1 GCA_000008565.1 172 Deinococcus puniceus GCA_001644565.1 165 Deinococcus gobiensis I-0 GCA_000252445.1 3B 259 Enterococcus faecalis V583 GCA_000007785.1 259 Streptomyces cinnamoneus GCA_001885705.1 232 Enterococcus hirae ATCC 9790 GCA_000271405.2 231 Enterococcus asini ATCC 700915 GCA_000407365.1 231 Enterococcus canis NBRC 100695 GCA_001544375.1 231 Enterococcus dispar ATCC 51266 GCA_000406945.1 231 Enterococcus faecium DO GCA_000174395.2 231 Enterococcus haemoperoxidus ATCC BAA-382 GCA_000407165.1 231 Enterococcus massiliensis GCA_001050095.1 231 Enterococcus mundtii QU 25 GCA_000504125.1 231 Enterococcus phoeniculicola ATCC BAA-412 GCA_000407505.1 231 Enterococcus rivorum GCA_001742285.1 231 Enterococcus thailandicus GCA_001652875.1 3C 218 Clostridium beijerinckii GCA_000833105.2 218 Clostridium puniceum GCA_002006345.1 218 Clostridium saccharoperbutylacetonicum N1-4_28HMT_29 GCA_000340885.1 209 Clostridium saccharobutylicum DSM 13864 GCA_000473995.1 194 Clostridium chromiireducens GCA_002029255.1 3D 157 Escherichia coli IAI39 GCA_000026345.1 157 Escherichia coli O104_3AH4 str.
Article Title: Search for translation arrest peptides encoded upstream of genes for components of protein localization pathways
Article Snippet: 168 116 529122 Bacillus thuringiensis YBT-1518 117 358681 Brevibacillus brevis NBRC 100599 118 1121126 Brochothrix thermosphacta DSM 20171 = FSL F6-1036 119 565655 Enterococcus casseliflavus EC20 120 1121864 Enterococcus cecorum DSM 20682 = ATCC 43198 121 226185 Enterococcus faecalis V583 122 1158608 Enterococcus haemoperoxidus ATCC BAA-382 123 768486 Enterococcus hirae ATCC 9790 124 1397697 Exiguobacterium acetylicum DSM 20416 125 235909 Geobacillus kaustophilus HTA426 126 272621 Lactobacillus acidophilus NCFM 127 1423821 Lactobacillus aviarius subsp. aviarius DSM 20655 128 387344 Lactobacillus brevis ATCC 367 129 748671 Lactobacillus crispatus ST1 130 390333 Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 131 334390 Lactobacillus fermentum IFO 3956 132 324831 Lactobacillus gasseri ATCC 33323 = JCM 1131 133 326425 Lactobacillus helveticus CNRZ32 134 525328 Lactobacillus iners DSM 13335 135 525329 Lactobacillus jensenii JV-V16 136 257314 Lactobacillus johnsonii NCC 533 137 321967 Lactobacillus paracasei ATCC 334 138 220668 Lactobacillus plantarum WCFS1 139 557436 Lactobacillus reuteri DSM 20016 140 568703 Lactobacillus rhamnosus GG 141 1069534 Lactobacillus ruminis ATCC 27782 142 314315 Lactobacillus sakei subsp. sakei 23K 143 362948 Lactobacillus salivarius UCC118 144 420890 Lactococcus garvieae Lg2 145 272623 Lactococcus lactis subsp. lactis Il1403 146 203120 Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 147 169963 Listeria monocytogenes EGD-e 148 28031 Lysinibacillus fusiformis 149 940190 Melissococcus plutonius ATCC 35311 150 203123 Oenococcus oeni PSU-1 151 160799 Paenibacillus borealis 152 886882 Paenibacillus polymyxa SC2 153 1426 Parageobacillus thermoglucosidans 154 862514 Pediococcus acidilactici DSM 20284 155 93061 Staphylococcus aureus subsp. aureus NCTC 8325 156 1296619 Staphylococcus capitis CR01 157 176280 Staphylococcus epidermidis ATCC 12228 158 246432 Staphylococcus equorum 159 279808 Staphylococcus haemolyticus JCSC1435 160 435837 Staphylococcus hominis subsp. hominis C80 161 698737 Staphylococcus lugdunensis HKU09-01 162 937773 Staphylococcus pseudintermedius HKU10-03 163 342451 Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 164 147467 Staphylococcus sciuri subsp. sciuri 165 1194526 Staphylococcus warneri SG1 166 1288 Staphylococcus xylosus 167 208435 Streptococcus agalactiae 2603V/R 168 862971 Streptococcus anginosus C238 169 1302863 Streptococcus cristatus AS 1.3089 170 759913 Streptococcus dysgalactiae subsp. equisimilis AC-2713 171 40041 Streptococcus equi subsp. zooepidemicus 172 981539 Streptococcus gallolyticus subsp. gallolyticus ATCC 43143 173 467705 Streptococcus gordonii str.
Article Title: Full-length 16S rRNA gene amplicon analysis of human gut microbiota using MinION™ nanopore sequencing confers species-level resolution
Article Snippet: 97-27 GCA_000008505.1 261 Bacillus cereus ATCC 14579 GCA_000007825.1 215 Bacillus cytotoxicus NVH 391-98 GCA_000017425.1 wC 245 Clostridium beijerinckii GCA_000833105.2 245 Clostridium saccharoperbutylacetonicum N1-4_28HMT_29 GCA_000340885.1 231 Clostridium puniceum GCA_002006345.1 230 Clostridium saccharobutylicum DSM 13864 GCA_000473995.1 wD 328 Deinococcus radiodurans R1 GCA_000008565.1 234 Deinococcus gobiensis I-0 GCA_000252445.1 217 Deinococcus puniceus GCA_001644565.1 wE 242 Streptococcus mutans UA159 GCA_000007465.2 178 Streptococcus ferus DSM 20646 GCA_000372425.1 162 Streptococcus massiliensis DSM 18628 GCA_000380065.1 wF 214 Enterococcus faecalis V583 GCA_000007785.1 214 Streptomyces cinnamoneus GCA_001885705.1 200 Enterococcus hirae ATCC 9790 GCA_000271405.2 199 Enterococcus asini ATCC 700915 GCA_000407365.1 199 Enterococcus canis NBRC 100695 GCA_001544375.1 199 Enterococcus casseliflavus EC20 GCA_000157355.2 199 Enterococcus dispar ATCC 51266 GCA_000406945.1 199 Enterococcus faecium DO GCA_000174395.2 199 Enterococcus haemoperoxidus ATCC BAA-382 GCA_000407165.1 199 Enterococcus massiliensis GCA_001050095.1 199 Enterococcus mundtii QU 25 GCA_000504125.1 199 Enterococcus phoeniculicola ATCC BAA-412 GCA_000407505.1 199 Enterococcus rivorum GCA_001742285.1 199 Enterococcus saccharolyticus subsp. saccharolyticus ATCC 43076 GCA_000407285.1 199 Enterococcus thailandicus GCA_001652875.1 199 Vagococcus penaei GCA_001998885.1 wG 175 Clostridium beijerinckii GCA_000833105.2 175 Clostridium saccharoperbutylacetonicum N1-4_28HMT_29 GCA_000340885.1 161 Clostridium puniceum GCA_002006345.1 161 Clostridium saccharobutylicum DSM 13864 GCA_000473995.1 151 Clostridium butyricum GCA_001456065.2 wH 258 Rhodobacter sphaeroides 2.4.1 GCA_000012905.2 242 Rhodobacter sphaeroides ATCC 17025 GCA_000016405.1 236 Gemmobacter megaterium GCA_900156815.1 wI 185 Deinococcus radiodurans R1 GCA_000008565.1 147 Deinococcus deserti VCD115 GCA_000020685.1 137 Deinococcus puniceus GCA_001644565.1 wJ 216 Erwinia iniecta GCA_001267535.1 216 Escherichia coli IAI39 GCA_000026345.1 216 Escherichia coli O104_3AH4 str.
Article Title: Full-length 16S rRNA gene amplicon analysis of human gut microbiota using MinION™ nanopore sequencing confers species-level resolution
Article Snippet: 301 GCA_000006925.2 151 Erwinia iniecta GCA_001267535.1 8H 96 Bifidobacterium adolescentis ATCC 15703 GCA_000010425.1 84 Bifidobacterium dentium JCM 1195 = DSM 20436 GCA_001042595.1 84 Bifidobacterium thermophilum GCA_000741495.1 84 Bifidobacterium tsurumiense GCA_000741765.1 82 Bifidobacterium angulatum DSM 20098 = JCM 7096 GCA_001025155.1 82 Bifidobacterium callitrichos DSM 23973 GCA_000741175.1 82 Nesterenkonia alba DSM 19423 GCA_000421745.1 82 Pseudoglutamicibacter albus DNF00011 GCA_000758985.1 8I 265 Bifidobacterium adolescentis ATCC 15703 GCA_000010425.1 245 Bifidobacterium choerinum GCA_000741135.1 245 Bifidobacterium pseudolongum PV8-2 GCA_000800475.2 244 Bifidobacterium angulatum DSM 20098 = JCM 7096 GCA_001025155.1 8J 239 Deinococcus radiodurans R1 GCA_000008565.1 129 Deinococcus marmoris DSM 12784 GCA_000701405.1 129 Deinococcus swuensis GCA_000800395.1 121 Deinococcus puniceus GCA_001644565.1 8K 237 Enterococcus faecalis V583 GCA_000007785.1 237 Streptomyces cinnamoneus GCA_001885705.1 225 Enterococcus hirae ATCC 9790 GCA_000271405.2 211 Enterococcus canis NBRC 100695 GCA_001544375.1 211 Enterococcus faecium DO GCA_000174395.2 211 Enterococcus haemoperoxidus ATCC BAA-382 GCA_000407165.1 211 Enterococcus mundtii QU 25 GCA_000504125.1 211 Enterococcus phoeniculicola ATCC BAA-412 GCA_000407505.1 211 Enterococcus rivorum GCA_001742285.1 211 Enterococcus thailandicus GCA_001652875.1 8L 196 Escherichia coli IAI39 GCA_000026345.1 196 Escherichia coli O104_3AH4 str.
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