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stomics database  (Complete Genomics Inc)


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    Structured Review

    Complete Genomics Inc stomics database
    Stomics Database, supplied by Complete Genomics Inc, used in various techniques. Bioz Stars score: 99/100, based on 474 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/stomics+database/Stereo-seq+Transcriptomics+Set+for+FFPE/pmc12885794-109-9-9
    Average 99 stars, based on 474 article reviews
    stomics database - by Bioz Stars, 2026-10
    99/100 stars

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    Related Articles

    Expressing:

    Article Title: Functional and Genetic Analyses Unveil the Implication of hoxa4a in Zebrafish Craniofacial Development
    Article Snippet: .. Analysis of hoxa4a expression patterns during early zebrafish embryogenesis was conducted using the Spatial Transcript Omics Database (STOmics DB) [20], incorporating both single-cell RNA sequencing (scRNA-seq) and spatial transcriptomic (stereo-seq) datasets. ..

    Single Cell:

    Article Title: Functional and Genetic Analyses Unveil the Implication of hoxa4a in Zebrafish Craniofacial Development
    Article Snippet: .. Analysis of hoxa4a expression patterns during early zebrafish embryogenesis was conducted using the Spatial Transcript Omics Database (STOmics DB) [20], incorporating both single-cell RNA sequencing (scRNA-seq) and spatial transcriptomic (stereo-seq) datasets. ..

    Article Title: Mapping the zygote-to-adult developmental cell phylogeny in Arabidopsis thaliana reveals a three-cell rule of branching.
    Article Snippet: Similar to the evolutionary history of all species on Earth, the developmental lineage history of all cells in a multicellular organism is stored in a phylogenetic tree.. Mapping the zygote-to-adult developmental cell phylogeny of a complex organism is of tremendous value but technically challenging.. We here developed e-SMALT, a powerful cell lineage tracing system integrated with single-cell RNA sequencing, in Arabidopsis thaliana to record the zygote-to-adult developmental lineages of two plant individuals.

    Article Title: Chemotherapy triggers immune evasion by fostering LEPR + Kupffer cell differentiation in liver metastases.
    Article Snippet: Article Chemotherapy triggers immune evasion by fostering LEPR + Kupffer cell differentiation in liver metastases

    RNA Sequencing:

    Article Title: Functional and Genetic Analyses Unveil the Implication of hoxa4a in Zebrafish Craniofacial Development
    Article Snippet: .. Analysis of hoxa4a expression patterns during early zebrafish embryogenesis was conducted using the Spatial Transcript Omics Database (STOmics DB) [20], incorporating both single-cell RNA sequencing (scRNA-seq) and spatial transcriptomic (stereo-seq) datasets. ..

    Transformation Assay:

    Article Title: Mapping the zygote-to-adult developmental cell phylogeny in Arabidopsis thaliana reveals a three-cell rule of branching.
    Article Snippet: Similar to the evolutionary history of all species on Earth, the developmental lineage history of all cells in a multicellular organism is stored in a phylogenetic tree.. Mapping the zygote-to-adult developmental cell phylogeny of a complex organism is of tremendous value but technically challenging.. We here developed e-SMALT, a powerful cell lineage tracing system integrated with single-cell RNA sequencing, in Arabidopsis thaliana to record the zygote-to-adult developmental lineages of two plant individuals.

    other:

    Article Title: RegFormer: a single-cell foundation model powered by gene regulatory hierarchies.
    Article Snippet: We acknowledge the Stomics Cloud platform (https://cloud.stomics.tech/) for providing GPU computational resources.

    Spatial Transcriptomics:

    Article Title: Impaired Metabolic Remodeling Characterizes Injured Niches during Post-ischemic Kidney Repair
    Article Snippet: Background The role of the tissue microenvironment in the transition from AKI to CKD remains poorly understood.. While the persistence of failed-repair proximal tubule (FR-PT) cells is postulated to hamper kidney regeneration, the spatial metabolic architecture of injured tissue and its effect on regenerative capacity have not been fully characterized.. Methods We analyzed mouse kidneys 14 days after bilateral ischemia-reperfusion injury using a multimodal spatial omics approach.

    Enzyme-linked Immunosorbent Assay:

    Article Title: Chemotherapy triggers immune evasion by fostering LEPR + Kupffer cell differentiation in liver metastases.
    Article Snippet: Article Chemotherapy triggers immune evasion by fostering LEPR + Kupffer cell differentiation in liver metastases

    Transcriptomics:

    Article Title: Chemotherapy triggers immune evasion by fostering LEPR + Kupffer cell differentiation in liver metastases.
    Article Snippet: Article Chemotherapy triggers immune evasion by fostering LEPR + Kupffer cell differentiation in liver metastases

    Sequencing:

    Article Title: Chemotherapy triggers immune evasion by fostering LEPR + Kupffer cell differentiation in liver metastases.
    Article Snippet: Article Chemotherapy triggers immune evasion by fostering LEPR + Kupffer cell differentiation in liver metastases

    ALP Assay:

    Article Title: Chemotherapy triggers immune evasion by fostering LEPR + Kupffer cell differentiation in liver metastases.
    Article Snippet: Article Chemotherapy triggers immune evasion by fostering LEPR + Kupffer cell differentiation in liver metastases

    Infection:

    Article Title: Chemotherapy triggers immune evasion by fostering LEPR + Kupffer cell differentiation in liver metastases.
    Article Snippet: Article Chemotherapy triggers immune evasion by fostering LEPR + Kupffer cell differentiation in liver metastases

    H&E Stain:

    Article Title: Spatial transcriptomic profiling of porcine tissue microarray detecting subclinical circovirus infection
    Article Snippet: .. The first section was subjected to H&E staining for histological evaluation, while the second was mounted directly onto a Stereo-seq chip N Slide V1.0 (STOmics, Cat. No. 210CN114). .. Subsequent processing was performed according to the Stereo-seq Transcriptomics Set for FFPE User Manual (Document No. STUM-TT004) using the Stereo-seq Transcriptomics N Kit V1.0 (Cat. No. 211KN114) and Stereo-seq 16 Barcode Library Preparation Kit V1.0 (Cat. No. 111KL160).



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    Complete Genomics Inc stomics db transcription database
    Single-cell analysis of SUSD3 in various cancers. (A) SUSD3 expression summary of 32 cell types from 77 single-cell datasets. (B) The scatter plot shows the distribution of 10 different cell types in the GSE103322HINSC dataset, as well as SUSD3 expression levels of cells in the GSE103322 dataset. (C) Spatial <t>transcription</t> slices showed the spatial expression of SUSD3, CD68, and CD163 markers, and the color of the dots indicated the expression level of the markers. (D) The scatter plot shows the distribution of 10 different cell types in the GSE120575 dataset, as well as SUSD3 expression levels of cells in the GSE120575 dataset. (E) Spatial transcription slices showed the spatial expression of SUSD3, ANXA1, and CCR7 markers, and the color of the dots indicated the expression level of the markers.
    Stomics Db Transcription Database, supplied by Complete Genomics Inc, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Image Search Results


    Single-cell analysis of SUSD3 in various cancers. (A) SUSD3 expression summary of 32 cell types from 77 single-cell datasets. (B) The scatter plot shows the distribution of 10 different cell types in the GSE103322HINSC dataset, as well as SUSD3 expression levels of cells in the GSE103322 dataset. (C) Spatial transcription slices showed the spatial expression of SUSD3, CD68, and CD163 markers, and the color of the dots indicated the expression level of the markers. (D) The scatter plot shows the distribution of 10 different cell types in the GSE120575 dataset, as well as SUSD3 expression levels of cells in the GSE120575 dataset. (E) Spatial transcription slices showed the spatial expression of SUSD3, ANXA1, and CCR7 markers, and the color of the dots indicated the expression level of the markers.

    Journal: Frontiers in Immunology

    Article Title: Exploration of SUSD3 in pan-cancer: studying its role, predictive analysis, and biological significance in various malignant tumors in humans

    doi: 10.3389/fimmu.2025.1521965

    Figure Lengend Snippet: Single-cell analysis of SUSD3 in various cancers. (A) SUSD3 expression summary of 32 cell types from 77 single-cell datasets. (B) The scatter plot shows the distribution of 10 different cell types in the GSE103322HINSC dataset, as well as SUSD3 expression levels of cells in the GSE103322 dataset. (C) Spatial transcription slices showed the spatial expression of SUSD3, CD68, and CD163 markers, and the color of the dots indicated the expression level of the markers. (D) The scatter plot shows the distribution of 10 different cell types in the GSE120575 dataset, as well as SUSD3 expression levels of cells in the GSE120575 dataset. (E) Spatial transcription slices showed the spatial expression of SUSD3, ANXA1, and CCR7 markers, and the color of the dots indicated the expression level of the markers.

    Article Snippet: Additionally, the spatial distribution of SUSD3 was examined using the STOmics DB transcription database ( https://db.cngb.org/stomics/ ) ( ).

    Techniques: Single-cell Analysis, Expressing