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stomics db transcription database  (Complete Genomics Inc)


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    Complete Genomics Inc stomics db transcription database
    Single-cell analysis of SUSD3 in various cancers. (A) SUSD3 expression summary of 32 cell types from 77 single-cell datasets. (B) The scatter plot shows the distribution of 10 different cell types in the GSE103322HINSC dataset, as well as SUSD3 expression levels of cells in the GSE103322 dataset. (C) Spatial <t>transcription</t> slices showed the spatial expression of SUSD3, CD68, and CD163 markers, and the color of the dots indicated the expression level of the markers. (D) The scatter plot shows the distribution of 10 different cell types in the GSE120575 dataset, as well as SUSD3 expression levels of cells in the GSE120575 dataset. (E) Spatial transcription slices showed the spatial expression of SUSD3, ANXA1, and CCR7 markers, and the color of the dots indicated the expression level of the markers.
    Stomics Db Transcription Database, supplied by Complete Genomics Inc, used in various techniques. Bioz Stars score: 99/100, based on 459 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/stomics+database/Stereo-seq+Transcriptomics+Set+for+FFPE/pmc11968365-67-10-10
    Average 99 stars, based on 459 article reviews
    stomics db transcription database - by Bioz Stars, 2026-09
    99/100 stars

    Images

    1) Product Images from "Exploration of SUSD3 in pan-cancer: studying its role, predictive analysis, and biological significance in various malignant tumors in humans"

    Article Title: Exploration of SUSD3 in pan-cancer: studying its role, predictive analysis, and biological significance in various malignant tumors in humans

    Journal: Frontiers in Immunology

    doi: 10.3389/fimmu.2025.1521965

    Single-cell analysis of SUSD3 in various cancers. (A) SUSD3 expression summary of 32 cell types from 77 single-cell datasets. (B) The scatter plot shows the distribution of 10 different cell types in the GSE103322HINSC dataset, as well as SUSD3 expression levels of cells in the GSE103322 dataset. (C) Spatial transcription slices showed the spatial expression of SUSD3, CD68, and CD163 markers, and the color of the dots indicated the expression level of the markers. (D) The scatter plot shows the distribution of 10 different cell types in the GSE120575 dataset, as well as SUSD3 expression levels of cells in the GSE120575 dataset. (E) Spatial transcription slices showed the spatial expression of SUSD3, ANXA1, and CCR7 markers, and the color of the dots indicated the expression level of the markers.
    Figure Legend Snippet: Single-cell analysis of SUSD3 in various cancers. (A) SUSD3 expression summary of 32 cell types from 77 single-cell datasets. (B) The scatter plot shows the distribution of 10 different cell types in the GSE103322HINSC dataset, as well as SUSD3 expression levels of cells in the GSE103322 dataset. (C) Spatial transcription slices showed the spatial expression of SUSD3, CD68, and CD163 markers, and the color of the dots indicated the expression level of the markers. (D) The scatter plot shows the distribution of 10 different cell types in the GSE120575 dataset, as well as SUSD3 expression levels of cells in the GSE120575 dataset. (E) Spatial transcription slices showed the spatial expression of SUSD3, ANXA1, and CCR7 markers, and the color of the dots indicated the expression level of the markers.

    Techniques Used: Single-cell Analysis, Expressing

    Related Articles

    Transcriptomics:

    Article Title: A spatial code governs olfactory receptor choice and aligns sensory maps in the nose and brain
    Article Snippet: MERSCOPE Cell Boundary Staining Kit , Vizgen , Cat# 10400118. .. Stereo-seq Transcriptomics T kit v1.3 , STOmics , Cat# 211KT13114-CG. .. Stereo-seq 16 Barcode Library Preparation Kit , STOmics , Cat # 111KL160-CG.

    Expressing:

    Article Title: Functional and Genetic Analyses Unveil the Implication of hoxa4a in Zebrafish Craniofacial Development
    Article Snippet: .. Analysis of hoxa4a expression patterns during early zebrafish embryogenesis was conducted using the Spatial Transcript Omics Database (STOmics DB) [20], incorporating both single-cell RNA sequencing (scRNA-seq) and spatial transcriptomic (stereo-seq) datasets. ..

    Single Cell:

    Article Title: Functional and Genetic Analyses Unveil the Implication of hoxa4a in Zebrafish Craniofacial Development
    Article Snippet: .. Analysis of hoxa4a expression patterns during early zebrafish embryogenesis was conducted using the Spatial Transcript Omics Database (STOmics DB) [20], incorporating both single-cell RNA sequencing (scRNA-seq) and spatial transcriptomic (stereo-seq) datasets. ..

    RNA Sequencing:

    Article Title: Functional and Genetic Analyses Unveil the Implication of hoxa4a in Zebrafish Craniofacial Development
    Article Snippet: .. Analysis of hoxa4a expression patterns during early zebrafish embryogenesis was conducted using the Spatial Transcript Omics Database (STOmics DB) [20], incorporating both single-cell RNA sequencing (scRNA-seq) and spatial transcriptomic (stereo-seq) datasets. ..

    other:

    Article Title: Artificial Intelligence in Transcriptomics: From Human-in-the-Loop to Agentic AI.
    Article Snippet: Abbreviations: Serial Analysis of Gene Expression (SAGE); Expressed Sequence Tag (EST); In Situ Hybridization (ISH); Gene Expression Omnibus (GEO); Database for Gene Expression Evolution (Bgee); Sequence Read Archive (SRA); SPAtial transcriptomics annotation at Single-CEll Resolution (SPASCER); Panglao Database (PanglaoDB); Cancer Genome Anatomy Project (CGAP) uses SAGE; Human Cell Landscape (HCL); Genomic Data Commons (GDC) Data Portal; The Cancer Genome Atlas (TCGA); CellMiner Cross-DataBase (CDB); Chinese Glioma Genome Atlas (CGGA); IVY Glioblastoma Atlas Project (GAP); Open Pediatric Brain Tumor Atlas (OpenPBTA); Open Pediatric Cancer (OpenPedCan) Project; Single-Cell Pediatric Cancer Atlas (ScPCA); The Spinal Cord Injury (SCI) Myeloid Cell Atlas; Spatio-Temporal Cell Atlas of Brain (STAB2); Human Tumor Atlas Network (HTAN); Spatial Omics Resource of Cancer (SORC) Database; Comprehensive Repository of Spatial Transcriptomics (CROST); Spatial Transcript Omics DataBase (STOmics DB); Human Brain Transcriptome (HBT); National Institutes of Health (NIH) Blueprint Non-Human Primate (NHP) Atlas; Mouse Genome Informatics Gene Expression Database (MGI GXD); Adult Genotype–Tissue Expression (GTEx) Project; Brain Transcriptome (BrainTx) Database; Brain Initiative Cell Census Network (BICCN); Integrative Library of Integrated Network-Based Cellular Signatures (iLINCS); Database of Genotypes and Phenotypes (dbGaP); Alzheimer’s Disease (AD) Knowledge Portal; Aging, Dementia and Traumatic Brain Injury (TBI) Study; Common Metabolic Diseases Genome Atlas (CMDGA); Therapeutically Applicable Research to Generate Effective Treatments (TARGET); Single-Cell and Spatial RNA-Seq Database for Alzheimer’s Disease (ssREAD).

    Article Title: RegFormer: a single-cell foundation model powered by gene regulatory hierarchies.
    Article Snippet: We acknowledge the Stomics Cloud platform (https://cloud.stomics.tech/) for providing GPU computational resources.

    Sequencing:

    Article Title: Adult regenerative defects arise from discordant scaling of signal dependent growth and patterning
    Article Snippet: .. All subsequent steps, including cryosectioning, Stereo-seq library preparation, sequencing, and raw data processing, were performed at the BGI facility (Riga, Latvia) in collaboration with BGI, supported by a STOmics Grant awarded to E. Tanaka. ..



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    stomics db transcription database  (Complete Genomics Inc)
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    Complete Genomics Inc stomics db transcription database
    Single-cell analysis of SUSD3 in various cancers. (A) SUSD3 expression summary of 32 cell types from 77 single-cell datasets. (B) The scatter plot shows the distribution of 10 different cell types in the GSE103322HINSC dataset, as well as SUSD3 expression levels of cells in the GSE103322 dataset. (C) Spatial <t>transcription</t> slices showed the spatial expression of SUSD3, CD68, and CD163 markers, and the color of the dots indicated the expression level of the markers. (D) The scatter plot shows the distribution of 10 different cell types in the GSE120575 dataset, as well as SUSD3 expression levels of cells in the GSE120575 dataset. (E) Spatial transcription slices showed the spatial expression of SUSD3, ANXA1, and CCR7 markers, and the color of the dots indicated the expression level of the markers.
    Stomics Db Transcription Database, supplied by Complete Genomics Inc, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/stomics+database/Stereo-seq+Transcriptomics+Set+for+FFPE/pmc11968365-67-10-10
    Average 99 stars, based on 1 article reviews
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    Image Search Results


    Single-cell analysis of SUSD3 in various cancers. (A) SUSD3 expression summary of 32 cell types from 77 single-cell datasets. (B) The scatter plot shows the distribution of 10 different cell types in the GSE103322HINSC dataset, as well as SUSD3 expression levels of cells in the GSE103322 dataset. (C) Spatial transcription slices showed the spatial expression of SUSD3, CD68, and CD163 markers, and the color of the dots indicated the expression level of the markers. (D) The scatter plot shows the distribution of 10 different cell types in the GSE120575 dataset, as well as SUSD3 expression levels of cells in the GSE120575 dataset. (E) Spatial transcription slices showed the spatial expression of SUSD3, ANXA1, and CCR7 markers, and the color of the dots indicated the expression level of the markers.

    Journal: Frontiers in Immunology

    Article Title: Exploration of SUSD3 in pan-cancer: studying its role, predictive analysis, and biological significance in various malignant tumors in humans

    doi: 10.3389/fimmu.2025.1521965

    Figure Lengend Snippet: Single-cell analysis of SUSD3 in various cancers. (A) SUSD3 expression summary of 32 cell types from 77 single-cell datasets. (B) The scatter plot shows the distribution of 10 different cell types in the GSE103322HINSC dataset, as well as SUSD3 expression levels of cells in the GSE103322 dataset. (C) Spatial transcription slices showed the spatial expression of SUSD3, CD68, and CD163 markers, and the color of the dots indicated the expression level of the markers. (D) The scatter plot shows the distribution of 10 different cell types in the GSE120575 dataset, as well as SUSD3 expression levels of cells in the GSE120575 dataset. (E) Spatial transcription slices showed the spatial expression of SUSD3, ANXA1, and CCR7 markers, and the color of the dots indicated the expression level of the markers.

    Article Snippet: Additionally, the spatial distribution of SUSD3 was examined using the STOmics DB transcription database ( https://db.cngb.org/stomics/ ) ( ).

    Techniques: Single-cell Analysis, Expressing