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ptyb 12 vector  (New England Biolabs)


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    New England Biolabs ptyb 12 vector
    Ptyb 12 Vector, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 99/100, based on 14890 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/statistical+program+stata+version+12/EcoRI/pmc04933167-156-19-27
    Average 99 stars, based on 14890 article reviews
    ptyb 12 vector - by Bioz Stars, 2026-09
    99/100 stars

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    Related Articles

    Polymerase Chain Reaction:

    Article Title: Rhythmic protein condensation in the circadian regulation of glycogen metabolism
    Article Snippet: The neutral site 1 (NSI) plasmid pAM2314 (Ditty et al. ) was linearized with EcoRI-HF (New England Biolabs) restriction enzyme. .. The PCR amplified gene fragment, EYFP DNA fragment and EcoRI digested pAM2314 plasmid DNA products were gel purified and Gibson assembled (New England Biolabs) to create the pAM2341-PglgA:: glgA-eyfp (pMR0300) plasmid. ..

    Article Title: Pan-cancer analysis identifies FKBP10 as a regulator of tumor immunosuppression and therapeutic response
    Article Snippet: .. The full-length human FKBP10 genetic sequence was amplified by PCR from a cDNA library using Phanta Super-Fidelity DNA Polymerase (Vazyme, China) and inserted into the LV-ECMV-PURO viral vector via the Bam HI and EcoRI restriction cut-off sites (New England Biolabs, USA). .. For FKBP10 knockdown, short hairpin RNA (shRNA) target sequences were designed with the BLOCK-iT RNAi Designer (Invitrogen, USA).

    Article Title: A Wnt-induced conformational phospho-switch in DVL3 controls association with Frizzled receptors and Wnt/β-catenin signaling
    Article Snippet: hDVL3 segments of interest (IDR2, amino acids 335 to 396; DEP, amino acids 398 to 496; PDZ, amino acids 243 to 351; and PDZ-IDR2-DEP, amino acids 243 to 496) were amplified by polymerase chain reaction (PCR) and inserted into a pETM11 or pET-Z (IDR2) expression vectors via restriction digestion between the 5′-NcoI and 3′-KpnI sites, using BspHI (R0517, NEB) and KpnI (R3142S, NEB) restriction enzymes. .. The DNA segment encoding CK1δ or ε was amplified by PCR and inserted into pETM11 expression vector via restriction digestion between the 5′-NcoI and 3′-EcoRI sites, using NcoI (R0193L, NEB) and EcoRI (R3101S, NEB) restriction enzymes. ..

    Article Title: Rhythmic protein condensation in the circadian regulation of glycogen metabolism
    Article Snippet: The neutral site 1 (NSI) plasmid pAM2991 (Ivleva et al. ) was linearized with EcoRI-HF (New England Biolabs) restriction enzyme. .. The PCR amplified gene fragment, EYFP DNA fragment and EcoRI digested pAM2991 plasmid DNA products were gel purified and Gibson assembled (New England Biolabs) to create the pAM2991-Ptrc::glgA-EYFP (pMR0301) plasmid. ..

    Amplification:

    Article Title: Rhythmic protein condensation in the circadian regulation of glycogen metabolism
    Article Snippet: The neutral site 1 (NSI) plasmid pAM2314 (Ditty et al. ) was linearized with EcoRI-HF (New England Biolabs) restriction enzyme. .. The PCR amplified gene fragment, EYFP DNA fragment and EcoRI digested pAM2314 plasmid DNA products were gel purified and Gibson assembled (New England Biolabs) to create the pAM2341-PglgA:: glgA-eyfp (pMR0300) plasmid. ..

    Article Title: Pan-cancer analysis identifies FKBP10 as a regulator of tumor immunosuppression and therapeutic response
    Article Snippet: .. The full-length human FKBP10 genetic sequence was amplified by PCR from a cDNA library using Phanta Super-Fidelity DNA Polymerase (Vazyme, China) and inserted into the LV-ECMV-PURO viral vector via the Bam HI and EcoRI restriction cut-off sites (New England Biolabs, USA). .. For FKBP10 knockdown, short hairpin RNA (shRNA) target sequences were designed with the BLOCK-iT RNAi Designer (Invitrogen, USA).

    Article Title: A Wnt-induced conformational phospho-switch in DVL3 controls association with Frizzled receptors and Wnt/β-catenin signaling
    Article Snippet: hDVL3 segments of interest (IDR2, amino acids 335 to 396; DEP, amino acids 398 to 496; PDZ, amino acids 243 to 351; and PDZ-IDR2-DEP, amino acids 243 to 496) were amplified by polymerase chain reaction (PCR) and inserted into a pETM11 or pET-Z (IDR2) expression vectors via restriction digestion between the 5′-NcoI and 3′-KpnI sites, using BspHI (R0517, NEB) and KpnI (R3142S, NEB) restriction enzymes. .. The DNA segment encoding CK1δ or ε was amplified by PCR and inserted into pETM11 expression vector via restriction digestion between the 5′-NcoI and 3′-EcoRI sites, using NcoI (R0193L, NEB) and EcoRI (R3101S, NEB) restriction enzymes. ..

    Article Title: Rhythmic protein condensation in the circadian regulation of glycogen metabolism
    Article Snippet: The neutral site 1 (NSI) plasmid pAM2991 (Ivleva et al. ) was linearized with EcoRI-HF (New England Biolabs) restriction enzyme. .. The PCR amplified gene fragment, EYFP DNA fragment and EcoRI digested pAM2991 plasmid DNA products were gel purified and Gibson assembled (New England Biolabs) to create the pAM2991-Ptrc::glgA-EYFP (pMR0301) plasmid. ..

    Plasmid Preparation:

    Article Title: Rhythmic protein condensation in the circadian regulation of glycogen metabolism
    Article Snippet: The neutral site 1 (NSI) plasmid pAM2314 (Ditty et al. ) was linearized with EcoRI-HF (New England Biolabs) restriction enzyme. .. The PCR amplified gene fragment, EYFP DNA fragment and EcoRI digested pAM2314 plasmid DNA products were gel purified and Gibson assembled (New England Biolabs) to create the pAM2341-PglgA:: glgA-eyfp (pMR0300) plasmid. ..

    Article Title: Rhythmic protein condensation in the circadian regulation of glycogen metabolism
    Article Snippet: The neutral site 1 (NSI) plasmid pAM2991 (Ivleva et al. ) was linearized with EcoRI-HF (New England Biolabs) restriction enzyme. .. The PCR amplified gene fragment, EYFP DNA fragment and EcoRI digested pAM2991 plasmid DNA products were gel purified and Gibson assembled (New England Biolabs) to create the pAM2991-Ptrc::glgA-EYFP (pMR0301) plasmid. ..

    Purification:

    Article Title: Rhythmic protein condensation in the circadian regulation of glycogen metabolism
    Article Snippet: The neutral site 1 (NSI) plasmid pAM2314 (Ditty et al. ) was linearized with EcoRI-HF (New England Biolabs) restriction enzyme. .. The PCR amplified gene fragment, EYFP DNA fragment and EcoRI digested pAM2314 plasmid DNA products were gel purified and Gibson assembled (New England Biolabs) to create the pAM2341-PglgA:: glgA-eyfp (pMR0300) plasmid. ..

    Article Title: Rhythmic protein condensation in the circadian regulation of glycogen metabolism
    Article Snippet: The neutral site 1 (NSI) plasmid pAM2991 (Ivleva et al. ) was linearized with EcoRI-HF (New England Biolabs) restriction enzyme. .. The PCR amplified gene fragment, EYFP DNA fragment and EcoRI digested pAM2991 plasmid DNA products were gel purified and Gibson assembled (New England Biolabs) to create the pAM2991-Ptrc::glgA-EYFP (pMR0301) plasmid. ..

    Transformation Assay:

    Article Title: Transcription and cohesin direct domain boundary spatial positioning and are linked to Friedreich's ataxia.
    Article Snippet: Using pLJM1-Smc3 as template, the K38A mutation was introduced into Smc3 to generate pLJM1-Smc3_K38A via PCR (NEB #M0492) site-directed mutagenesis and Gibson Assembly (NEB #E2621). .. The reaction was then transformed into chemically competent E. coli (NEB #C3040) and positive clones were identified by Nanopore whole-plasmid sequencing (Plasmidsaurus). shRNA-expressing constructs was generated as follows: SGEP (Addgene #111170) or pLKO.1-puro (Addgene #8453) plasmids were subjected to restriction digest with EcoRI (NEB #R0101) and XhoI (NEB #R0146) using standard conditions and shRNA sequences ligated using NEBuilder HiFi DNA Assembly Master Mix (NEB #E2621). ..

    Clone Assay:

    Article Title: Transcription and cohesin direct domain boundary spatial positioning and are linked to Friedreich's ataxia.
    Article Snippet: Using pLJM1-Smc3 as template, the K38A mutation was introduced into Smc3 to generate pLJM1-Smc3_K38A via PCR (NEB #M0492) site-directed mutagenesis and Gibson Assembly (NEB #E2621). .. The reaction was then transformed into chemically competent E. coli (NEB #C3040) and positive clones were identified by Nanopore whole-plasmid sequencing (Plasmidsaurus). shRNA-expressing constructs was generated as follows: SGEP (Addgene #111170) or pLKO.1-puro (Addgene #8453) plasmids were subjected to restriction digest with EcoRI (NEB #R0101) and XhoI (NEB #R0146) using standard conditions and shRNA sequences ligated using NEBuilder HiFi DNA Assembly Master Mix (NEB #E2621). ..

    Article Title: Isolation and characterization of Avs-1, a bacteriophage effective against the aquaculture pathogen Aeromonas veronii .
    Article Snippet: .. Putative endolysin gene in phage Lys40 was cloned into the vector pET28a via Hind III (New England Biolabs, Ipswich, MA, USA) and EcoR I (New England Biolabs, Ipswich, MA, USA) and introduced into E. coli BL21, which allowed the expression of lys40 to be induced under the control of the lac promoter using IPTG as the inducer. ..

    Sequencing:

    Article Title: Transcription and cohesin direct domain boundary spatial positioning and are linked to Friedreich's ataxia.
    Article Snippet: Using pLJM1-Smc3 as template, the K38A mutation was introduced into Smc3 to generate pLJM1-Smc3_K38A via PCR (NEB #M0492) site-directed mutagenesis and Gibson Assembly (NEB #E2621). .. The reaction was then transformed into chemically competent E. coli (NEB #C3040) and positive clones were identified by Nanopore whole-plasmid sequencing (Plasmidsaurus). shRNA-expressing constructs was generated as follows: SGEP (Addgene #111170) or pLKO.1-puro (Addgene #8453) plasmids were subjected to restriction digest with EcoRI (NEB #R0101) and XhoI (NEB #R0146) using standard conditions and shRNA sequences ligated using NEBuilder HiFi DNA Assembly Master Mix (NEB #E2621). ..

    Article Title: Pan-cancer analysis identifies FKBP10 as a regulator of tumor immunosuppression and therapeutic response
    Article Snippet: .. The full-length human FKBP10 genetic sequence was amplified by PCR from a cDNA library using Phanta Super-Fidelity DNA Polymerase (Vazyme, China) and inserted into the LV-ECMV-PURO viral vector via the Bam HI and EcoRI restriction cut-off sites (New England Biolabs, USA). .. For FKBP10 knockdown, short hairpin RNA (shRNA) target sequences were designed with the BLOCK-iT RNAi Designer (Invitrogen, USA).

    shRNA:

    Article Title: Transcription and cohesin direct domain boundary spatial positioning and are linked to Friedreich's ataxia.
    Article Snippet: Using pLJM1-Smc3 as template, the K38A mutation was introduced into Smc3 to generate pLJM1-Smc3_K38A via PCR (NEB #M0492) site-directed mutagenesis and Gibson Assembly (NEB #E2621). .. The reaction was then transformed into chemically competent E. coli (NEB #C3040) and positive clones were identified by Nanopore whole-plasmid sequencing (Plasmidsaurus). shRNA-expressing constructs was generated as follows: SGEP (Addgene #111170) or pLKO.1-puro (Addgene #8453) plasmids were subjected to restriction digest with EcoRI (NEB #R0101) and XhoI (NEB #R0146) using standard conditions and shRNA sequences ligated using NEBuilder HiFi DNA Assembly Master Mix (NEB #E2621). ..

    Construct:

    Article Title: Transcription and cohesin direct domain boundary spatial positioning and are linked to Friedreich's ataxia.
    Article Snippet: Using pLJM1-Smc3 as template, the K38A mutation was introduced into Smc3 to generate pLJM1-Smc3_K38A via PCR (NEB #M0492) site-directed mutagenesis and Gibson Assembly (NEB #E2621). .. The reaction was then transformed into chemically competent E. coli (NEB #C3040) and positive clones were identified by Nanopore whole-plasmid sequencing (Plasmidsaurus). shRNA-expressing constructs was generated as follows: SGEP (Addgene #111170) or pLKO.1-puro (Addgene #8453) plasmids were subjected to restriction digest with EcoRI (NEB #R0101) and XhoI (NEB #R0146) using standard conditions and shRNA sequences ligated using NEBuilder HiFi DNA Assembly Master Mix (NEB #E2621). ..

    Generated:

    Article Title: Transcription and cohesin direct domain boundary spatial positioning and are linked to Friedreich's ataxia.
    Article Snippet: Using pLJM1-Smc3 as template, the K38A mutation was introduced into Smc3 to generate pLJM1-Smc3_K38A via PCR (NEB #M0492) site-directed mutagenesis and Gibson Assembly (NEB #E2621). .. The reaction was then transformed into chemically competent E. coli (NEB #C3040) and positive clones were identified by Nanopore whole-plasmid sequencing (Plasmidsaurus). shRNA-expressing constructs was generated as follows: SGEP (Addgene #111170) or pLKO.1-puro (Addgene #8453) plasmids were subjected to restriction digest with EcoRI (NEB #R0101) and XhoI (NEB #R0146) using standard conditions and shRNA sequences ligated using NEBuilder HiFi DNA Assembly Master Mix (NEB #E2621). ..

    Article Title: DNA supercoiling modulates bZIP transcription factor–DNA interaction
    Article Snippet: The commercial plasmid pUC19 (2686 bp) was isolated from E. coli using the PureLink HiPure Midiprep kit (Thermo Fisher Scientific). .. Nicked open-circular DNA was generated by incubating pDNA(SC-) (1 μg) with 1 U mg-1 of the strand-specific nicking endonuclease Nt.BspQI (New England Biolabs) in 1 x Nt.BspQI buffer at 50° C for 2 h. Linear DNA was produced by complete digestion of pDNA(SC-) with the single-site restriction enzyme EcoRI (New England Biolabs) under saturating enzyme conditions in the manufacturer’s buffer at 37 °C for 2 h. Positively supercoiled pDNA(SC+) was obtained by treating pDNA(SC-) (30 μg) with 300 μg ml-1 reverse gyrase from Saccharolobus solfataricus ( ) in 35 mM Tris-HCl (pH 7.0), 0.1 mM EDTA, 30 mM MgCl2, 2 mM DTT and 1 mM ATP. .. Nicked open-circular DNA was generated by incubating pDNA(SC-) (1 μg) with 1 U mg-1 of the strand-specific nicking endonuclease Nt.BspQI (New England Biolabs) in 1 x Nt.BspQI buffer at 50° C for 2 h. Linear DNA was produced by complete digestion of pDNA(SC-) with the single-site restriction enzyme EcoRI (New England Biolabs) under saturating enzyme conditions in the manufacturer’s buffer at 37 °C for 2 h. Positively supercoiled pDNA(SC+) was obtained by treating pDNA(SC-) (30 μg) with 300 μg ml-1 reverse gyrase from Saccharolobus solfataricus ( ) in 35 mM Tris-HCl (pH 7.0), 0.1 mM EDTA, 30 mM MgCl2, 2 mM DTT and 1 mM ATP.

    cDNA Library Assay:

    Article Title: Pan-cancer analysis identifies FKBP10 as a regulator of tumor immunosuppression and therapeutic response
    Article Snippet: .. The full-length human FKBP10 genetic sequence was amplified by PCR from a cDNA library using Phanta Super-Fidelity DNA Polymerase (Vazyme, China) and inserted into the LV-ECMV-PURO viral vector via the Bam HI and EcoRI restriction cut-off sites (New England Biolabs, USA). .. For FKBP10 knockdown, short hairpin RNA (shRNA) target sequences were designed with the BLOCK-iT RNAi Designer (Invitrogen, USA).

    Expressing:

    Article Title: A Wnt-induced conformational phospho-switch in DVL3 controls association with Frizzled receptors and Wnt/β-catenin signaling
    Article Snippet: hDVL3 segments of interest (IDR2, amino acids 335 to 396; DEP, amino acids 398 to 496; PDZ, amino acids 243 to 351; and PDZ-IDR2-DEP, amino acids 243 to 496) were amplified by polymerase chain reaction (PCR) and inserted into a pETM11 or pET-Z (IDR2) expression vectors via restriction digestion between the 5′-NcoI and 3′-KpnI sites, using BspHI (R0517, NEB) and KpnI (R3142S, NEB) restriction enzymes. .. The DNA segment encoding CK1δ or ε was amplified by PCR and inserted into pETM11 expression vector via restriction digestion between the 5′-NcoI and 3′-EcoRI sites, using NcoI (R0193L, NEB) and EcoRI (R3101S, NEB) restriction enzymes. ..

    Article Title: Isolation and characterization of Avs-1, a bacteriophage effective against the aquaculture pathogen Aeromonas veronii .
    Article Snippet: .. Putative endolysin gene in phage Lys40 was cloned into the vector pET28a via Hind III (New England Biolabs, Ipswich, MA, USA) and EcoR I (New England Biolabs, Ipswich, MA, USA) and introduced into E. coli BL21, which allowed the expression of lys40 to be induced under the control of the lac promoter using IPTG as the inducer. ..

    Produced:

    Article Title: DNA supercoiling modulates bZIP transcription factor–DNA interaction
    Article Snippet: The commercial plasmid pUC19 (2686 bp) was isolated from E. coli using the PureLink HiPure Midiprep kit (Thermo Fisher Scientific). .. Nicked open-circular DNA was generated by incubating pDNA(SC-) (1 μg) with 1 U mg-1 of the strand-specific nicking endonuclease Nt.BspQI (New England Biolabs) in 1 x Nt.BspQI buffer at 50° C for 2 h. Linear DNA was produced by complete digestion of pDNA(SC-) with the single-site restriction enzyme EcoRI (New England Biolabs) under saturating enzyme conditions in the manufacturer’s buffer at 37 °C for 2 h. Positively supercoiled pDNA(SC+) was obtained by treating pDNA(SC-) (30 μg) with 300 μg ml-1 reverse gyrase from Saccharolobus solfataricus ( ) in 35 mM Tris-HCl (pH 7.0), 0.1 mM EDTA, 30 mM MgCl2, 2 mM DTT and 1 mM ATP. .. Nicked open-circular DNA was generated by incubating pDNA(SC-) (1 μg) with 1 U mg-1 of the strand-specific nicking endonuclease Nt.BspQI (New England Biolabs) in 1 x Nt.BspQI buffer at 50° C for 2 h. Linear DNA was produced by complete digestion of pDNA(SC-) with the single-site restriction enzyme EcoRI (New England Biolabs) under saturating enzyme conditions in the manufacturer’s buffer at 37 °C for 2 h. Positively supercoiled pDNA(SC+) was obtained by treating pDNA(SC-) (30 μg) with 300 μg ml-1 reverse gyrase from Saccharolobus solfataricus ( ) in 35 mM Tris-HCl (pH 7.0), 0.1 mM EDTA, 30 mM MgCl2, 2 mM DTT and 1 mM ATP.

    Control:

    Article Title: Isolation and characterization of Avs-1, a bacteriophage effective against the aquaculture pathogen Aeromonas veronii .
    Article Snippet: .. Putative endolysin gene in phage Lys40 was cloned into the vector pET28a via Hind III (New England Biolabs, Ipswich, MA, USA) and EcoR I (New England Biolabs, Ipswich, MA, USA) and introduced into E. coli BL21, which allowed the expression of lys40 to be induced under the control of the lac promoter using IPTG as the inducer. ..



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