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gse175540 spatial transcriptome sequencing data npc  (ATCC)


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    ATCC gse175540 spatial transcriptome sequencing data npc
    Gse175540 Spatial Transcriptome Sequencing Data Npc, supplied by ATCC, used in various techniques. Bioz Stars score: 91/100, based on 6 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/spatial+transcriptome+sequencing+data/Phytophthora+palmivora+(Butler)+Butler/pmc12281385__mmc5-281-58-73
    Average 91 stars, based on 6 article reviews
    gse175540 spatial transcriptome sequencing data npc - by Bioz Stars, 2026-10
    91/100 stars

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    Single Cell:

    Article Title: Interferon-responsive HEVs drive tumor tertiary lymphoid structure formation and predict immunotherapy response in nasopharyngeal carcinoma.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Foxp3/Transcription Factor Staining Buffer Set ThermoFisher Cat# 00-5523-00 Recombinant human CXCL9 MedChemExpress Cat# HY-P7253 Recombinant human IFNγ PeproTech Cat# 300-02-100 Recombinant human IFNβ MedChemExpress Cat# HY-P73128 Recombinant human TNFα PeproTech Cat# 300-01A-50 Recombinant human LIGHT PeproTech Cat# CM84 Deposited data GeoMx Digital spatial profiler data (TLS) This paper GEO: GSE289272 RNA-seq data of isolated endothelial cell subsets This paper NGDC: HRA010207 RNA-seq data of HUVEC after cytokines induction This paper NGDC: HRA010207 Pan-cancer vascular EC profile https://www.nature.com/ articles/s41586-024-07698-1 NGDC: PRJCA018695 Bulk RNA-seq data (Melanoma-GSE100797, Melanoma-GSE91061, Melanoma-PRJEB23709, Metastatic gastric cancer-PRJEB25780, NSCLC-GSE135222, Renal cell carcinoma-Braun.2020) https://doi.org/10.1016/j.gpb. .. 2022.08.004 TIGER: http://tiger.canceromics.org/ Single-cell transcriptome sequencing and bulk RNA sequencing data (NPC-HRA000087) https://www.nature.com/articles/ s41422-020-00402-8 NGDC: HRA000087 Bulk RNA sequencing data (NPC-HRA004738) https://www.nature.com/articles/ s41467-023-40402-x NGDC: HRA004738 Single-cell transcriptome sequencing data (CRC) https://www.cell.com/cancer-cell/ fulltext/S1535-6108(23)00137-X?_ returnURL=https%3A%2F%2 Flinkinghub.elsevier.com%2 Fretrieve%2Fpii%2FS1535 61082300137X%3Fshowall%3Dtrue GEO: GSE205506 Single-cell transcriptome sequencing data (ccRCC) https://www.nature.com/articles/ s41467-022-33375-w GEO: GSE178481 Spatial transcriptome sequencing data (ccRCC) https://www.cell.com/immunity/fulltext/ S1074-7613(22)00081-4?_returnURL= https%3A%2F%2Flinkinghub.elsevier. com%2Fretrieve%2Fpii%2FS107476 1322000814%3Fshowall%3Dtrue GEO: GSE175540 Spatial transcriptome sequencing data (NPC) https://www.nature.com/articles/ s41467-024-52153-4 GEO: GSE206245 Experimental models: Cell lines HUVEC ATCC Cat# CRL-1730; RRID: CVCL_2959 Oligonucleotides Primers in Table S1 This paper N/A Software and algorithms FlowJo V.10 BD Bioscience https://www.flowjo.com/ GraphPad Prism (9.3.1) Dotmatics https://www.graphpad.com/ R (v4.4.1) R Core Team https://www.r-project.org Python (3.9.12) Python http://www.python.org/ HALO (3.2.1851) Indica Labs https://indicalab.com/ ggplot2 (3.4.4) CRAN https://CRAN.R-project.org/package=ggplot2 (Continued on next page) Cell Reports Medicine 6, 102200, July 15, 2025 e2 OPEN ACCESS .. HUVEC cell lines were purchased from the American Type Culture Collection (Manassas, VA, USA) and were used within 6 months of thawing.

    Article Title: Interferon-responsive HEVs drive tumor tertiary lymphoid structure formation and predict immunotherapy response in nasopharyngeal carcinoma
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Foxp3/Transcription Factor Staining Buffer Set ThermoFisher Cat# 00-5523-00 Recombinant human CXCL9 MedChemExpress Cat# HY-P7253 Recombinant human IFNγ PeproTech Cat# 300-02-100 Recombinant human IFNβ MedChemExpress Cat# HY-P73128 Recombinant human TNFα PeproTech Cat# 300-01A-50 Recombinant human LIGHT PeproTech Cat# CM84 Deposited data GeoMx Digital spatial profiler data (TLS) This paper GEO: GSE289272 RNA-seq data of isolated endothelial cell subsets This paper NGDC: HRA010207 RNA-seq data of HUVEC after cytokines induction This paper NGDC: HRA010207 Pan-cancer vascular EC profile https://www.nature.com/ articles/s41586-024-07698-1 NGDC: PRJCA018695 Bulk RNA-seq data (Melanoma-GSE100797, Melanoma-GSE91061, Melanoma-PRJEB23709, Metastatic gastric cancer-PRJEB25780, NSCLC-GSE135222, Renal cell carcinoma-Braun.2020) https://doi.org/10.1016/j.gpb. .. 2022.08.004 TIGER: http://tiger.canceromics.org/ Single-cell transcriptome sequencing and bulk RNA sequencing data (NPC-HRA000087) https://www.nature.com/articles/ s41422-020-00402-8 NGDC: HRA000087 Bulk RNA sequencing data (NPC-HRA004738) https://www.nature.com/articles/ s41467-023-40402-x NGDC: HRA004738 Single-cell transcriptome sequencing data (CRC) https://www.cell.com/cancer-cell/ fulltext/S1535-6108(23)00137-X?_ returnURL=https%3A%2F%2 Flinkinghub.elsevier.com%2 Fretrieve%2Fpii%2FS1535 61082300137X%3Fshowall%3Dtrue GEO: GSE205506 Single-cell transcriptome sequencing data (ccRCC) https://www.nature.com/articles/ s41467-022-33375-w GEO: GSE178481 Spatial transcriptome sequencing data (ccRCC) https://www.cell.com/immunity/fulltext/ S1074-7613(22)00081-4?_returnURL= https%3A%2F%2Flinkinghub.elsevier. com%2Fretrieve%2Fpii%2FS107476 1322000814%3Fshowall%3Dtrue GEO: GSE175540 Spatial transcriptome sequencing data (NPC) https://www.nature.com/articles/ s41467-024-52153-4 GEO: GSE206245 Experimental models: Cell lines HUVEC ATCC Cat# CRL-1730; RRID: CVCL_2959 Oligonucleotides Primers in Table S1 This paper N/A Software and algorithms FlowJo V.10 BD Bioscience https://www.flowjo.com/ GraphPad Prism (9.3.1) Dotmatics https://www.graphpad.com/ R (v4.4.1) R Core Team https://www.r-project.org Python (3.9.12) Python http://www.python.org/ HALO (3.2.1851) Indica Labs https://indicalab.com/ ggplot2 (3.4.4) CRAN https://CRAN.R-project.org/package=ggplot2 (Continued on next page) Cell Reports Medicine 6, 102200, July 15, 2025 e2 Article ll OPEN ACCESS .. HUVEC cell lines were purchased from the American Type Culture Collection (Manassas, VA, USA) and were used within 6 months of thawing.

    Sequencing:

    Article Title: Interferon-responsive HEVs drive tumor tertiary lymphoid structure formation and predict immunotherapy response in nasopharyngeal carcinoma.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Foxp3/Transcription Factor Staining Buffer Set ThermoFisher Cat# 00-5523-00 Recombinant human CXCL9 MedChemExpress Cat# HY-P7253 Recombinant human IFNγ PeproTech Cat# 300-02-100 Recombinant human IFNβ MedChemExpress Cat# HY-P73128 Recombinant human TNFα PeproTech Cat# 300-01A-50 Recombinant human LIGHT PeproTech Cat# CM84 Deposited data GeoMx Digital spatial profiler data (TLS) This paper GEO: GSE289272 RNA-seq data of isolated endothelial cell subsets This paper NGDC: HRA010207 RNA-seq data of HUVEC after cytokines induction This paper NGDC: HRA010207 Pan-cancer vascular EC profile https://www.nature.com/ articles/s41586-024-07698-1 NGDC: PRJCA018695 Bulk RNA-seq data (Melanoma-GSE100797, Melanoma-GSE91061, Melanoma-PRJEB23709, Metastatic gastric cancer-PRJEB25780, NSCLC-GSE135222, Renal cell carcinoma-Braun.2020) https://doi.org/10.1016/j.gpb. .. 2022.08.004 TIGER: http://tiger.canceromics.org/ Single-cell transcriptome sequencing and bulk RNA sequencing data (NPC-HRA000087) https://www.nature.com/articles/ s41422-020-00402-8 NGDC: HRA000087 Bulk RNA sequencing data (NPC-HRA004738) https://www.nature.com/articles/ s41467-023-40402-x NGDC: HRA004738 Single-cell transcriptome sequencing data (CRC) https://www.cell.com/cancer-cell/ fulltext/S1535-6108(23)00137-X?_ returnURL=https%3A%2F%2 Flinkinghub.elsevier.com%2 Fretrieve%2Fpii%2FS1535 61082300137X%3Fshowall%3Dtrue GEO: GSE205506 Single-cell transcriptome sequencing data (ccRCC) https://www.nature.com/articles/ s41467-022-33375-w GEO: GSE178481 Spatial transcriptome sequencing data (ccRCC) https://www.cell.com/immunity/fulltext/ S1074-7613(22)00081-4?_returnURL= https%3A%2F%2Flinkinghub.elsevier. com%2Fretrieve%2Fpii%2FS107476 1322000814%3Fshowall%3Dtrue GEO: GSE175540 Spatial transcriptome sequencing data (NPC) https://www.nature.com/articles/ s41467-024-52153-4 GEO: GSE206245 Experimental models: Cell lines HUVEC ATCC Cat# CRL-1730; RRID: CVCL_2959 Oligonucleotides Primers in Table S1 This paper N/A Software and algorithms FlowJo V.10 BD Bioscience https://www.flowjo.com/ GraphPad Prism (9.3.1) Dotmatics https://www.graphpad.com/ R (v4.4.1) R Core Team https://www.r-project.org Python (3.9.12) Python http://www.python.org/ HALO (3.2.1851) Indica Labs https://indicalab.com/ ggplot2 (3.4.4) CRAN https://CRAN.R-project.org/package=ggplot2 (Continued on next page) Cell Reports Medicine 6, 102200, July 15, 2025 e2 OPEN ACCESS .. HUVEC cell lines were purchased from the American Type Culture Collection (Manassas, VA, USA) and were used within 6 months of thawing.

    Article Title: Interferon-responsive HEVs drive tumor tertiary lymphoid structure formation and predict immunotherapy response in nasopharyngeal carcinoma
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Foxp3/Transcription Factor Staining Buffer Set ThermoFisher Cat# 00-5523-00 Recombinant human CXCL9 MedChemExpress Cat# HY-P7253 Recombinant human IFNγ PeproTech Cat# 300-02-100 Recombinant human IFNβ MedChemExpress Cat# HY-P73128 Recombinant human TNFα PeproTech Cat# 300-01A-50 Recombinant human LIGHT PeproTech Cat# CM84 Deposited data GeoMx Digital spatial profiler data (TLS) This paper GEO: GSE289272 RNA-seq data of isolated endothelial cell subsets This paper NGDC: HRA010207 RNA-seq data of HUVEC after cytokines induction This paper NGDC: HRA010207 Pan-cancer vascular EC profile https://www.nature.com/ articles/s41586-024-07698-1 NGDC: PRJCA018695 Bulk RNA-seq data (Melanoma-GSE100797, Melanoma-GSE91061, Melanoma-PRJEB23709, Metastatic gastric cancer-PRJEB25780, NSCLC-GSE135222, Renal cell carcinoma-Braun.2020) https://doi.org/10.1016/j.gpb. .. 2022.08.004 TIGER: http://tiger.canceromics.org/ Single-cell transcriptome sequencing and bulk RNA sequencing data (NPC-HRA000087) https://www.nature.com/articles/ s41422-020-00402-8 NGDC: HRA000087 Bulk RNA sequencing data (NPC-HRA004738) https://www.nature.com/articles/ s41467-023-40402-x NGDC: HRA004738 Single-cell transcriptome sequencing data (CRC) https://www.cell.com/cancer-cell/ fulltext/S1535-6108(23)00137-X?_ returnURL=https%3A%2F%2 Flinkinghub.elsevier.com%2 Fretrieve%2Fpii%2FS1535 61082300137X%3Fshowall%3Dtrue GEO: GSE205506 Single-cell transcriptome sequencing data (ccRCC) https://www.nature.com/articles/ s41467-022-33375-w GEO: GSE178481 Spatial transcriptome sequencing data (ccRCC) https://www.cell.com/immunity/fulltext/ S1074-7613(22)00081-4?_returnURL= https%3A%2F%2Flinkinghub.elsevier. com%2Fretrieve%2Fpii%2FS107476 1322000814%3Fshowall%3Dtrue GEO: GSE175540 Spatial transcriptome sequencing data (NPC) https://www.nature.com/articles/ s41467-024-52153-4 GEO: GSE206245 Experimental models: Cell lines HUVEC ATCC Cat# CRL-1730; RRID: CVCL_2959 Oligonucleotides Primers in Table S1 This paper N/A Software and algorithms FlowJo V.10 BD Bioscience https://www.flowjo.com/ GraphPad Prism (9.3.1) Dotmatics https://www.graphpad.com/ R (v4.4.1) R Core Team https://www.r-project.org Python (3.9.12) Python http://www.python.org/ HALO (3.2.1851) Indica Labs https://indicalab.com/ ggplot2 (3.4.4) CRAN https://CRAN.R-project.org/package=ggplot2 (Continued on next page) Cell Reports Medicine 6, 102200, July 15, 2025 e2 Article ll OPEN ACCESS .. HUVEC cell lines were purchased from the American Type Culture Collection (Manassas, VA, USA) and were used within 6 months of thawing.

    RNA Sequencing:

    Article Title: Interferon-responsive HEVs drive tumor tertiary lymphoid structure formation and predict immunotherapy response in nasopharyngeal carcinoma.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Foxp3/Transcription Factor Staining Buffer Set ThermoFisher Cat# 00-5523-00 Recombinant human CXCL9 MedChemExpress Cat# HY-P7253 Recombinant human IFNγ PeproTech Cat# 300-02-100 Recombinant human IFNβ MedChemExpress Cat# HY-P73128 Recombinant human TNFα PeproTech Cat# 300-01A-50 Recombinant human LIGHT PeproTech Cat# CM84 Deposited data GeoMx Digital spatial profiler data (TLS) This paper GEO: GSE289272 RNA-seq data of isolated endothelial cell subsets This paper NGDC: HRA010207 RNA-seq data of HUVEC after cytokines induction This paper NGDC: HRA010207 Pan-cancer vascular EC profile https://www.nature.com/ articles/s41586-024-07698-1 NGDC: PRJCA018695 Bulk RNA-seq data (Melanoma-GSE100797, Melanoma-GSE91061, Melanoma-PRJEB23709, Metastatic gastric cancer-PRJEB25780, NSCLC-GSE135222, Renal cell carcinoma-Braun.2020) https://doi.org/10.1016/j.gpb. .. 2022.08.004 TIGER: http://tiger.canceromics.org/ Single-cell transcriptome sequencing and bulk RNA sequencing data (NPC-HRA000087) https://www.nature.com/articles/ s41422-020-00402-8 NGDC: HRA000087 Bulk RNA sequencing data (NPC-HRA004738) https://www.nature.com/articles/ s41467-023-40402-x NGDC: HRA004738 Single-cell transcriptome sequencing data (CRC) https://www.cell.com/cancer-cell/ fulltext/S1535-6108(23)00137-X?_ returnURL=https%3A%2F%2 Flinkinghub.elsevier.com%2 Fretrieve%2Fpii%2FS1535 61082300137X%3Fshowall%3Dtrue GEO: GSE205506 Single-cell transcriptome sequencing data (ccRCC) https://www.nature.com/articles/ s41467-022-33375-w GEO: GSE178481 Spatial transcriptome sequencing data (ccRCC) https://www.cell.com/immunity/fulltext/ S1074-7613(22)00081-4?_returnURL= https%3A%2F%2Flinkinghub.elsevier. com%2Fretrieve%2Fpii%2FS107476 1322000814%3Fshowall%3Dtrue GEO: GSE175540 Spatial transcriptome sequencing data (NPC) https://www.nature.com/articles/ s41467-024-52153-4 GEO: GSE206245 Experimental models: Cell lines HUVEC ATCC Cat# CRL-1730; RRID: CVCL_2959 Oligonucleotides Primers in Table S1 This paper N/A Software and algorithms FlowJo V.10 BD Bioscience https://www.flowjo.com/ GraphPad Prism (9.3.1) Dotmatics https://www.graphpad.com/ R (v4.4.1) R Core Team https://www.r-project.org Python (3.9.12) Python http://www.python.org/ HALO (3.2.1851) Indica Labs https://indicalab.com/ ggplot2 (3.4.4) CRAN https://CRAN.R-project.org/package=ggplot2 (Continued on next page) Cell Reports Medicine 6, 102200, July 15, 2025 e2 OPEN ACCESS .. HUVEC cell lines were purchased from the American Type Culture Collection (Manassas, VA, USA) and were used within 6 months of thawing.

    Article Title: Interferon-responsive HEVs drive tumor tertiary lymphoid structure formation and predict immunotherapy response in nasopharyngeal carcinoma
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Foxp3/Transcription Factor Staining Buffer Set ThermoFisher Cat# 00-5523-00 Recombinant human CXCL9 MedChemExpress Cat# HY-P7253 Recombinant human IFNγ PeproTech Cat# 300-02-100 Recombinant human IFNβ MedChemExpress Cat# HY-P73128 Recombinant human TNFα PeproTech Cat# 300-01A-50 Recombinant human LIGHT PeproTech Cat# CM84 Deposited data GeoMx Digital spatial profiler data (TLS) This paper GEO: GSE289272 RNA-seq data of isolated endothelial cell subsets This paper NGDC: HRA010207 RNA-seq data of HUVEC after cytokines induction This paper NGDC: HRA010207 Pan-cancer vascular EC profile https://www.nature.com/ articles/s41586-024-07698-1 NGDC: PRJCA018695 Bulk RNA-seq data (Melanoma-GSE100797, Melanoma-GSE91061, Melanoma-PRJEB23709, Metastatic gastric cancer-PRJEB25780, NSCLC-GSE135222, Renal cell carcinoma-Braun.2020) https://doi.org/10.1016/j.gpb. .. 2022.08.004 TIGER: http://tiger.canceromics.org/ Single-cell transcriptome sequencing and bulk RNA sequencing data (NPC-HRA000087) https://www.nature.com/articles/ s41422-020-00402-8 NGDC: HRA000087 Bulk RNA sequencing data (NPC-HRA004738) https://www.nature.com/articles/ s41467-023-40402-x NGDC: HRA004738 Single-cell transcriptome sequencing data (CRC) https://www.cell.com/cancer-cell/ fulltext/S1535-6108(23)00137-X?_ returnURL=https%3A%2F%2 Flinkinghub.elsevier.com%2 Fretrieve%2Fpii%2FS1535 61082300137X%3Fshowall%3Dtrue GEO: GSE205506 Single-cell transcriptome sequencing data (ccRCC) https://www.nature.com/articles/ s41467-022-33375-w GEO: GSE178481 Spatial transcriptome sequencing data (ccRCC) https://www.cell.com/immunity/fulltext/ S1074-7613(22)00081-4?_returnURL= https%3A%2F%2Flinkinghub.elsevier. com%2Fretrieve%2Fpii%2FS107476 1322000814%3Fshowall%3Dtrue GEO: GSE175540 Spatial transcriptome sequencing data (NPC) https://www.nature.com/articles/ s41467-024-52153-4 GEO: GSE206245 Experimental models: Cell lines HUVEC ATCC Cat# CRL-1730; RRID: CVCL_2959 Oligonucleotides Primers in Table S1 This paper N/A Software and algorithms FlowJo V.10 BD Bioscience https://www.flowjo.com/ GraphPad Prism (9.3.1) Dotmatics https://www.graphpad.com/ R (v4.4.1) R Core Team https://www.r-project.org Python (3.9.12) Python http://www.python.org/ HALO (3.2.1851) Indica Labs https://indicalab.com/ ggplot2 (3.4.4) CRAN https://CRAN.R-project.org/package=ggplot2 (Continued on next page) Cell Reports Medicine 6, 102200, July 15, 2025 e2 Article ll OPEN ACCESS .. HUVEC cell lines were purchased from the American Type Culture Collection (Manassas, VA, USA) and were used within 6 months of thawing.

    Software:

    Article Title: Interferon-responsive HEVs drive tumor tertiary lymphoid structure formation and predict immunotherapy response in nasopharyngeal carcinoma.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Foxp3/Transcription Factor Staining Buffer Set ThermoFisher Cat# 00-5523-00 Recombinant human CXCL9 MedChemExpress Cat# HY-P7253 Recombinant human IFNγ PeproTech Cat# 300-02-100 Recombinant human IFNβ MedChemExpress Cat# HY-P73128 Recombinant human TNFα PeproTech Cat# 300-01A-50 Recombinant human LIGHT PeproTech Cat# CM84 Deposited data GeoMx Digital spatial profiler data (TLS) This paper GEO: GSE289272 RNA-seq data of isolated endothelial cell subsets This paper NGDC: HRA010207 RNA-seq data of HUVEC after cytokines induction This paper NGDC: HRA010207 Pan-cancer vascular EC profile https://www.nature.com/ articles/s41586-024-07698-1 NGDC: PRJCA018695 Bulk RNA-seq data (Melanoma-GSE100797, Melanoma-GSE91061, Melanoma-PRJEB23709, Metastatic gastric cancer-PRJEB25780, NSCLC-GSE135222, Renal cell carcinoma-Braun.2020) https://doi.org/10.1016/j.gpb. .. 2022.08.004 TIGER: http://tiger.canceromics.org/ Single-cell transcriptome sequencing and bulk RNA sequencing data (NPC-HRA000087) https://www.nature.com/articles/ s41422-020-00402-8 NGDC: HRA000087 Bulk RNA sequencing data (NPC-HRA004738) https://www.nature.com/articles/ s41467-023-40402-x NGDC: HRA004738 Single-cell transcriptome sequencing data (CRC) https://www.cell.com/cancer-cell/ fulltext/S1535-6108(23)00137-X?_ returnURL=https%3A%2F%2 Flinkinghub.elsevier.com%2 Fretrieve%2Fpii%2FS1535 61082300137X%3Fshowall%3Dtrue GEO: GSE205506 Single-cell transcriptome sequencing data (ccRCC) https://www.nature.com/articles/ s41467-022-33375-w GEO: GSE178481 Spatial transcriptome sequencing data (ccRCC) https://www.cell.com/immunity/fulltext/ S1074-7613(22)00081-4?_returnURL= https%3A%2F%2Flinkinghub.elsevier. com%2Fretrieve%2Fpii%2FS107476 1322000814%3Fshowall%3Dtrue GEO: GSE175540 Spatial transcriptome sequencing data (NPC) https://www.nature.com/articles/ s41467-024-52153-4 GEO: GSE206245 Experimental models: Cell lines HUVEC ATCC Cat# CRL-1730; RRID: CVCL_2959 Oligonucleotides Primers in Table S1 This paper N/A Software and algorithms FlowJo V.10 BD Bioscience https://www.flowjo.com/ GraphPad Prism (9.3.1) Dotmatics https://www.graphpad.com/ R (v4.4.1) R Core Team https://www.r-project.org Python (3.9.12) Python http://www.python.org/ HALO (3.2.1851) Indica Labs https://indicalab.com/ ggplot2 (3.4.4) CRAN https://CRAN.R-project.org/package=ggplot2 (Continued on next page) Cell Reports Medicine 6, 102200, July 15, 2025 e2 OPEN ACCESS .. HUVEC cell lines were purchased from the American Type Culture Collection (Manassas, VA, USA) and were used within 6 months of thawing.

    Article Title: Interferon-responsive HEVs drive tumor tertiary lymphoid structure formation and predict immunotherapy response in nasopharyngeal carcinoma
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Foxp3/Transcription Factor Staining Buffer Set ThermoFisher Cat# 00-5523-00 Recombinant human CXCL9 MedChemExpress Cat# HY-P7253 Recombinant human IFNγ PeproTech Cat# 300-02-100 Recombinant human IFNβ MedChemExpress Cat# HY-P73128 Recombinant human TNFα PeproTech Cat# 300-01A-50 Recombinant human LIGHT PeproTech Cat# CM84 Deposited data GeoMx Digital spatial profiler data (TLS) This paper GEO: GSE289272 RNA-seq data of isolated endothelial cell subsets This paper NGDC: HRA010207 RNA-seq data of HUVEC after cytokines induction This paper NGDC: HRA010207 Pan-cancer vascular EC profile https://www.nature.com/ articles/s41586-024-07698-1 NGDC: PRJCA018695 Bulk RNA-seq data (Melanoma-GSE100797, Melanoma-GSE91061, Melanoma-PRJEB23709, Metastatic gastric cancer-PRJEB25780, NSCLC-GSE135222, Renal cell carcinoma-Braun.2020) https://doi.org/10.1016/j.gpb. .. 2022.08.004 TIGER: http://tiger.canceromics.org/ Single-cell transcriptome sequencing and bulk RNA sequencing data (NPC-HRA000087) https://www.nature.com/articles/ s41422-020-00402-8 NGDC: HRA000087 Bulk RNA sequencing data (NPC-HRA004738) https://www.nature.com/articles/ s41467-023-40402-x NGDC: HRA004738 Single-cell transcriptome sequencing data (CRC) https://www.cell.com/cancer-cell/ fulltext/S1535-6108(23)00137-X?_ returnURL=https%3A%2F%2 Flinkinghub.elsevier.com%2 Fretrieve%2Fpii%2FS1535 61082300137X%3Fshowall%3Dtrue GEO: GSE205506 Single-cell transcriptome sequencing data (ccRCC) https://www.nature.com/articles/ s41467-022-33375-w GEO: GSE178481 Spatial transcriptome sequencing data (ccRCC) https://www.cell.com/immunity/fulltext/ S1074-7613(22)00081-4?_returnURL= https%3A%2F%2Flinkinghub.elsevier. com%2Fretrieve%2Fpii%2FS107476 1322000814%3Fshowall%3Dtrue GEO: GSE175540 Spatial transcriptome sequencing data (NPC) https://www.nature.com/articles/ s41467-024-52153-4 GEO: GSE206245 Experimental models: Cell lines HUVEC ATCC Cat# CRL-1730; RRID: CVCL_2959 Oligonucleotides Primers in Table S1 This paper N/A Software and algorithms FlowJo V.10 BD Bioscience https://www.flowjo.com/ GraphPad Prism (9.3.1) Dotmatics https://www.graphpad.com/ R (v4.4.1) R Core Team https://www.r-project.org Python (3.9.12) Python http://www.python.org/ HALO (3.2.1851) Indica Labs https://indicalab.com/ ggplot2 (3.4.4) CRAN https://CRAN.R-project.org/package=ggplot2 (Continued on next page) Cell Reports Medicine 6, 102200, July 15, 2025 e2 Article ll OPEN ACCESS .. HUVEC cell lines were purchased from the American Type Culture Collection (Manassas, VA, USA) and were used within 6 months of thawing.

    other:

    Article Title: Breaking the Phalanx: Overcoming Bacterial Drug Resistance with Quorum Sensing Inhibitors that Enhance Therapeutic Activity of Antibiotics
    Article Snippet: All strains of P. aeruginosa : MRSN 317 (NR-51516), MRSN 1344 (NR-51520), MRSN 1583 (NR-51524), PA14 (NR-50573), MRSN 315 (NR-51515) and Acinetobacter Baumannii : WC-136 (NR-19298), WC-487 (NR-19299), 137 (OIFC137) (NR-17777), BC-5 (NR-17783), and MRSN 1171 (NR-52153) were procured from ATCC.

    Inhibition:

    Article Title: Bactericidal And Antioxidant Effects of Domestic Essential Oils On Certain Pathogenic Bacteria.
    Article Snippet: .. Page 5/11 Antibiotics Inhibition (mm)STRAIN/ ATCC GMPBCBACDEPGNORTSAPKFNINAAKTNATMCIPPRLIMICAZ 1.512.5RRRR31.82.61.62.72.821.33.33.233.52.8E.coli 259221 0.9 2.51.82.52.72.51132.52 0.8 1.533.52Strept pyogens 19615 2 111R R1.4RRR1.71.52.2RR1.8R4RK.pnuemonia 700603 3 1.51RRRRR2.51R1.52.52.51.91.13.22.51.53.23E.col i 352184 212.2RRR1.82.81.92.32.31.522.21.53.232.82.83.2Prot vulgar 49132 5 2.50.52.533.5 333 11.533.53Strept agalactiae 6 2R212.733.52.5243.52R21.6R33.541.5Staph aueros 25923 7 R1.82.5RRRR2.52.22.51.52.22.521.53.33.233.23Shiglla sonna 25931 8 2R2.5RRR33R32.812.521.53.53.23.53.53.3Pratus mirabls 14153 9 212.8RRRR32.5RR1.92.32.51.83.33.323.23K.oxytoca 49131 10 2.52.531.5 333 1.211.5233.53Strept bovis 49147 11 RR21.2RR1.22.51.81.52.52.5R1.4RR2.82.33.81.3MRSA 4333012 2.10.621.42.72.83.52.523.232.1R2.32R2.73.54.22.7Staph saproh 15305 13 2.512.51 3.222.7R2.232.7R2.53R2.22.84.51.8Staph epidermis 1228 14 1.71RRRRR2.8RRRRR2.21.82.832.62.92.7Psedo aerginosa 27853 15 RR31.53.23.52.5RR2.52.54RRRR133.51.5Strept pneamoniae 311432 16 2.723RRRR3.52.52.51.73.52.52.52.53.73.53.53.63.5Entero cloacae 23355 17 2R1.7112.32.11.5R31.52R22R233.5REntero faecalis 29212 18 20.72.21.42.72.722.51.82.53.52.5R2.11.7R2.52.741.8Staph aures 29213 19 3.2. ..

    High Content Screening:

    Article Title: Methods for treatment of polyposis
    Article Snippet: Cell lines comprising plasmids comprising a CMV promoter operably linked to the 15H12/19D12 LCC, LCD, LCE, LCF or to the 15H12/19D12 HCA or HCB have been deposited at the American Type Culture Collection (ATCC); University Boulevard; Manassas, Va. 20110-2209 on May 21, 2003. .. The deposit names and the ATCC accession numbers for the cell lines are set forth below: (1) CMV promoter-15H12/19D12 HCA (γ4)— Deposit name: “15H12/19D12 HCA (γ4)” ATCC accession No.: PTA-5214 (2) CMV promoter-15H12/19012 HOB (γ4)— Deposit name: “15H12/19D12 HCB (γ4)” ATCC accession No.: PTA-5215 (3) CMV promoter-15H12/19D12 HCA (γ1)— Deposit name: “15H12/19D12 RCA (γ1)”; ATCC accession No.: PTA-5216 (4) CMV promoter-15H12/19D12 LCC (κ)— Deposit name: “15H12/19D12 LCC (κ)”; ATCC accession No.: PTA-5217 (5) CMV promoter-15H12/19D12 LCD (κ)— Deposit name: “15H12/19D12 LCD (κ)”; ATCC accession No.: PTA-5218 (6) CMV promoter-15H12/19D12 LCE (κ)— Deposit name: “15H12/19D12 LCE (κ)”; ATCC accession No.: PTA-5219 (7) CMV promoter-15H12/19D12 LCF (κ)— Deposit name: “15H12/19D12 LCF (κ)”; ATCC accession No.: PTA-5220 All restrictions on access to the plasmids deposited in ATCC will be removed upon grant of a patent. ..

    Article Title: Biomarkers for pre-selection of patients for anti-IGF1R therapy
    Article Snippet: Modified 19D12/15H12 Light Chain-C (SEQ ID NO: 1) (SEQ ID NO: 2) Modified 19D12/15H12 Light Chain-D (SEQ ID NO: 3) (SEQ ID NO: 4) Modified 19D12/15H12 Light Chain-E (SEQ ID NO: 5) (SEQ ID NO: 6) 19D12/15H12 Light Chain-F (LCF; SEQ ID NO: 7) (SEQ ID NO: 8) 19D12/15H12 heavy chain-A (HCA; SEQ ID NO: 9) (SEQ ID NO: 10) Modified 19D12/15H12 heavy chain-B (SEQ ID NO: 11) (SEQ ID NO: 12) Plasmids comprising a CMV promoter operably linked to the 15H12/19D12 LCC, LCD, LCE, LCF or to the 15H12/19D12 HCA or HCB have been deposited at the American Type Culture Collection (ATCC); 10801 University Boulevard; Manassas, Va. 20110-2209 on May 21, 2003. .. The deposit names and the ATCC accession numbers for the plasmids are set forth below: (1) CMV promoter-15H12/19D12 HCA (γ4)— Deposit name: “15H12/19D12 HCA (γ4)” ATCC accession No.: PTA-5214 (2) CMV promoter-15H12/19D12 HCB (γ4)— Deposit name: “15H12/19D12 HCB (γ4)” ATCC accession No.: PTA-5215 (3) CMV promoter-15H12/19D12 HCA (γ1)— Deposit name: “15H12/19D12 HCA (γ1)”; ATCC accession No.: PTA-5216 (4) CMV promoter-15H12/19D12 LCC (κ)— Deposit name: “15H12/19D12 LCC (κ)”; ATCC accession No.: PTA-5217 (5) CMV promoter-15H12/19D12 LCD (κ)— Deposit name: “15H12/19D12 LCD (κ)”; ATCC accession No.: PTA-5218 (6) CMV promoter-15H12/19D12 LCE (κ)— Deposit name: “15H12/19D12 LCE (κ)”; ATCC accession No.: PTA-5219 (7) CMV promoter-15H12/19D12 LCF (κ)— Deposit name: “15H12/19D12 LCF (κ)”; ATCC accession No.: PTA-5220 All restrictions on access to the plasmids deposited in ATCC will be removed upon grant of a patent. ..



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    Investigations on SGMS2—related Cellular and Molecular Interactions in Hepatocellular Carcinoma. a Western blotting analysis of SGMS2 expression in THP—1 cells and differentiated macrophages. Each experiment was independently repeated three times. b , c Apoptosis levels of Huh7 tumor cells co—cultured with control macrophages and SGMS2—overexpressing macrophages were detected by flow cytometry (FCM). d Expression of SGMS2 in spatial transcriptomics sequencing data. e Abundance estimation of the CD56dimCD16highNR4A3high NK cell population by single—sample gene—set enrichment analysis (ssGSEA). f Multiplex immunofluorescence (mIF) images of SGMS2, CD68, CD16, CD56, and NR4A3 markers in 6 human HCC tissue samples. “Zoom macrophage” indicates the aggregation area of SGMS2—positive macrophages, and “Zoom NK cell” represents the CD56dimCD16highNR4A3high NK cells. The scale bar is 50 um or 20 um. g Scatter plots showing the density of CD56dimCD16highNR4A3high NK cells between patients with high and low infiltration of SGMS2—positive macrophages. Statistical analysis was performed using the Mann—Whitney U test. h Pearson correlation analysis of the density of CD56dimCD16highNR4A3high NK cells and the density of SGMS2—positive macrophages. i Kaplan—Meier analysis of OS, RFS, and early RFS in HCC patients with different infiltration densities of SGMS2—positive macrophages and CD56dimCD16highNR4A3high NK cells. Survival distributions were compared using the log—rank test. Statistical significance is indicated as follows: * P < 0.05, ** P < 0.01, *** P < 0.001; ns indicates no significant difference

    Journal: Journal of Translational Medicine

    Article Title: SGMS2+ macrophages enhance NR4A3hi NK cell infiltration to improve prognosis and PD-1 treatment efficacy in hepatocellular carcinoma

    doi: 10.1186/s12967-025-07040-x

    Figure Lengend Snippet: Investigations on SGMS2—related Cellular and Molecular Interactions in Hepatocellular Carcinoma. a Western blotting analysis of SGMS2 expression in THP—1 cells and differentiated macrophages. Each experiment was independently repeated three times. b , c Apoptosis levels of Huh7 tumor cells co—cultured with control macrophages and SGMS2—overexpressing macrophages were detected by flow cytometry (FCM). d Expression of SGMS2 in spatial transcriptomics sequencing data. e Abundance estimation of the CD56dimCD16highNR4A3high NK cell population by single—sample gene—set enrichment analysis (ssGSEA). f Multiplex immunofluorescence (mIF) images of SGMS2, CD68, CD16, CD56, and NR4A3 markers in 6 human HCC tissue samples. “Zoom macrophage” indicates the aggregation area of SGMS2—positive macrophages, and “Zoom NK cell” represents the CD56dimCD16highNR4A3high NK cells. The scale bar is 50 um or 20 um. g Scatter plots showing the density of CD56dimCD16highNR4A3high NK cells between patients with high and low infiltration of SGMS2—positive macrophages. Statistical analysis was performed using the Mann—Whitney U test. h Pearson correlation analysis of the density of CD56dimCD16highNR4A3high NK cells and the density of SGMS2—positive macrophages. i Kaplan—Meier analysis of OS, RFS, and early RFS in HCC patients with different infiltration densities of SGMS2—positive macrophages and CD56dimCD16highNR4A3high NK cells. Survival distributions were compared using the log—rank test. Statistical significance is indicated as follows: * P < 0.05, ** P < 0.01, *** P < 0.001; ns indicates no significant difference

    Article Snippet: Spatial transcriptomics sequencing data were obtained from http://lifeome.net/supp/livercancer-st/data.htm and analyzed using Seurat in R. Subsequently, SCTtransform normalization was performed.

    Techniques: Western Blot, Expressing, Cell Culture, Control, Flow Cytometry, Sequencing, Multiplex Assay, Immunofluorescence, MANN-WHITNEY