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Molecular Dynamics Inc lammps software package
Lammps Software Package, supplied by Molecular Dynamics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/software+package+-plus/dynamics+lammps+molecular+simulator/pm42300964-259-16-0
Average 86 stars, based on 1 article reviews
lammps software package - by Bioz Stars, 2026-10
86/100 stars

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Article Title: Error estimation on the box size correction formula of diffusion coefficient in molecular simulations.
Article Snippet: Context Correcting the diffusion coefficient for simulation box size is an essential step in extrapolating small simulations to real systems.. The current common approach is a correction formula based on fluid dynamics theory, introduced by Yeh and Hummer [J. Phys.. Chem.

Article Title: Advancing the CL&Pol Polarizable Force Field for Accurate Modeling of Mg 2+ , Ca 2+ , and Zn 2+ Electrolytes.
Article Snippet: Divalent cations such as Mg2+, Ca2+, or Zn2+ are promising candidates for powerful and affordable post-Li batteries due to their high natural abundance and an expected two-electron transfer per charge carrier.. But an accurate representation of divalent cations in electrolytes by molecular dynamics simulations remains challenging due to the effects of their high charge density.. For ionic systems such as the ones studied here, a molecular interaction model with explicit polarization terms, using Drude induced dipoles, largely improves the representation of equilibrium and transport properties when compared to fixed-charge models.

Article Title: Physics-based nucleosome-resolution modeling of epigenetic-driven chromatin domain dynamics
Article Snippet: All simulations were executed using the molecular dynamics software LAMMPS [ ].

Article Title: CGRig: A Rigid-Body Protein Model with Residue-Level Interaction Sites for Long-Time and Large-Scale Protein Assembly Simulation.
Article Snippet: Molecular dynamics (MD) simulations are a powerful tool for investigating biomolecular dynamics underlying biological functions.. However, the accessible spatiotemporal scales of conventional all-atom simulations remain limited by high computational costs.. Coarse-graining reduces these costs by decreasing the number of interaction sites and enabling longer timesteps.

Software:

Article Title: Nano Carbon-mesh with Excellent Bonding Performance via Hydro-cage De-shielding Strategy.
Article Snippet: .. Molecular dynamics simulations were performed using the LAMMPS [ 43, 39 ] software package. ..

Article Title: Compact Solvation Enables Sub-Minute Sodium-Ion Storage: A Data-Driven Perspective.
Article Snippet: Extremely fast charging (XFC) of batteries holds significant importance in the era of intelligent technologies, yet the intricate role of electrolyte properties in determining XFC behavior remains obscure.. Furthermore, conventional theories and in situ characterization techniques fails to elucidate electrochemical behaviors under sub-minute-level charging conditions.. Herein, we report a data-driven approach for analyzing the effect of each independent physical and solvation property on sub-minute-level sodium-ion storage behavior.

Article Title: Strong effect of the nonpolar solvent molecular structure on CdSe nanoplatelet stacking.
Article Snippet: .. Molecular dynamics (MD) simulations of CdSe nanoplatelets (NPLs) coated with oleate ligands were performed using the LAMMPS software package. ..

Article Title: Capacity and Selectivity for Carbon Dioxide on Lignin-Derived Adsorbents via Molecular Simulation
Article Snippet: .. Classical Molecular Dynamics simulations were performed using the LAMMPS software. ..



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