software development kit (sdk) (DOE Systems Biology Knowledgebase)

About

News

Press Release

Team

Advisors

Partners

Contact

Bioz Stars

Bioz vStars

Buy from Supplier

Structured Review

DOE Systems Biology Knowledgebase software development kit (sdk)
Software Development Kit (Sdk), supplied by DOE Systems Biology Knowledgebase, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/software+development+kit/software+development+kit++sdk+/bio_rxiv__096354-111-17-15
Average 90 stars, based on 1 article reviews

software development kit (sdk) - by Bioz Stars, 2026-11

90/100 stars

Images

other:

Article Title: Metagenome-assembled genome extraction and analysis from microbiomes using KBase.
Article Snippet: Common commandline-based bioinformatics tools and novel KBase-specific tools are brought into the KBase operational space to be run via the Narrative notebooks using the KBase software development kit (SDK), simplifying their use while still offering most or all of the configuration typically available from the standalone tool.

Article Title: iMicrobe: Tools and data-driven discovery platform for the microbiome sciences
Article Snippet: 267 14 KBase 268 The Department of Energy’s (DOE) Systems Biology Knowledgebase [27] is “an open-access 269 bioinformatics software and data platform for analyzing plants, microbes, and their 270 communities.” KBase offers several dozen “apps” which can be organized into workflows called 271 “narratives.” To create a novel app, users must apply to for a KBase developer account and 272 install the KBase Software Development Kit (SDK) and dependencies (Java 1.7, Python 2.7, 273 NodeJS, Bower, Docker), and work with the KBase staff to integrate the app.

Article Title: The DOE Systems Biology Knowledgebase (KBase)
Article Snippet: KBase enables third-party developers to add their own apps for use by the broad scientific community (see KBase Software Development Kit section).

Article Title: Using KBase to Assemble and Annotate Prokaryotic Genomes.
Article Snippet: By allowing apps to be built in a standardized way, the KBase Software Development Kit (SDK) enables thirdparty developers to wrap new or existing opensource analysis tools as KBase apps, and make them available in the Narrative Interface.

Article Title: iMicrobe: Tools and data-driven discovery platform for the microbiome sciences
Article Snippet: 242 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 13 KBase 243 The Department of Energy’s (DOE) Systems Biology Knowledgebase [27] is “an open-access 244 bioinformatics software and data platform for analyzing plants, microbes, and their 245 communities.” KBase offers several dozen “apps” which can be organized into workflows called 246 “narratives.” To create a novel app, users must apply to for a KBase developer account and 247 install the KBase Software Development Kit (SDK) and dependencies (Java 1.7, Python 2.7, 248 NodeJS, Bower, Docker), and work with the KBase staff to integrate the app.

Article Title: The DOE Systems Biology Knowledgebase (KBase)
Article Snippet: KBase apps are used to identify clusters of co-expressed genes in these genomes, and the KBase Software Development Kit (SDK) is applied to add a new app for computing these clusters.

Extraction:

Article Title: Metagenome-assembled genome extraction and analysis from microbiomes using KBase.
Article Snippet: .. While this workflow offers tools for each of the key steps in the genome extraction process, it also provides a scaffold that can be easily extended with additional MAG recovery and analysis tools, via the KBase software development kit (SDK). .. Metagenome-assembled genome extraction and analysis from microbiomes using KBase Dylan Chivian 1✉, Sean P. Jungbluth 1, Paramvir S. Dehal1, Elisha M. Wood-Charlson 1, Richard S. Canon1, Benjamin H. Allen2, Mikayla M. Clark 2,4, Tianhao Gu3, Miriam L. Land 2, Gavin A. Price1, William J. Riehl1, Michael W. Sneddon1,5, Roman Sutormin1,6, Qizhi Zhang3, Robert W. Cottingham 2, Chris S. Henry3 and Adam P. Arkin 1✉ Uncultivated Bacteria and Archaea account for the vast majority of species on Earth, but obtaining their genomes directly from the environment, using shotgun sequencing, has only become possible recently.

Review

software development kit (sdk) (DOE Systems Biology Knowledgebase)

Structured Review

Images

Related Articles

other:

Extraction:

Similar Products

Image Search Results