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f u6 bfp shctr  (New England Biolabs)


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    Structured Review

    New England Biolabs f u6 bfp shctr

    F U6 Bfp Shctr, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 99/100, based on 6333 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/shrna+construct+shctrl/Gibson+Assembly+Master+Mix/pmc10950329-275-66-59
    Average 99 stars, based on 6333 article reviews
    f u6 bfp shctr - by Bioz Stars, 2026-10
    99/100 stars

    Images

    1) Product Images from "Rho GTPase signaling and mDia facilitate endocytosis via presynaptic actin"

    Article Title: Rho GTPase signaling and mDia facilitate endocytosis via presynaptic actin

    Journal: eLife

    doi: 10.7554/eLife.92755


    Figure Legend Snippet:

    Techniques Used: Knock-Out, Recombinant, Plasmid Preparation, Variant Assay, Transfection, shRNA, Binding Assay, Mutagenesis, Software, Sequencing

    Related Articles

    Plasmid Preparation:

    Article Title: Discovery and engineering of avian R2 retrotransposons for all-RNA-mediated targeted DNA integration in human cells.
    Article Snippet: To discover unknown retrotransposons for genomic integration in human cells, we searched 1,139 avian genomes, identified 159 avian R2 retrotransposons and characterized conserved/nonconserved sequence features in their proteins and untranslated region elements.. Engineered variants of these retrotransposons achieved up to 60% site-specific gene integration across human primary cells.. This work expands the avian R2 resource and provides additional tools for all-RNA-mediated genome editing.

    Article Title: Generation of a recombinant, antibiotic resistance gene-free Leishmania tarentolae strain as a live vaccine platform
    Article Snippet: The PCR product was purified from 0.8% agarose gel using the Wizard SV Gel and PCR Clean-Up System (Promega). .. Approximately 100 ng of linearized pLEXSY-noNeor vector and ~ 27 ng of the purified insert was mixed with Gibson Assembly Master Mix (New England Biolabs, NEB, USA) and incubated at 50 °C for 60 min. ..

    Article Title: Collapse of embryonic identities and emergence of functional diversity during motor neuron maturation.
    Article Snippet: These regions were amplified out of genomic DNA of C57BL/6J (JAX stock#000664) mice, and cloned into addgene plasmid #193741, which is a previously validated30 AAV-CHATenhancer-miniProm-chimericIntron-mCherry-WPRE plasmid. .. The chat enhancer was replaced with new open chromatin peaks by digesting this plasmid with Kpn1 and Age1, and inserting new peaks with Gibson assembly (NEB HiFi Assembly Mix). ..

    Construct:

    Article Title: Discovery and engineering of avian R2 retrotransposons for all-RNA-mediated targeted DNA integration in human cells.
    Article Snippet: To discover unknown retrotransposons for genomic integration in human cells, we searched 1,139 avian genomes, identified 159 avian R2 retrotransposons and characterized conserved/nonconserved sequence features in their proteins and untranslated region elements.. Engineered variants of these retrotransposons achieved up to 60% site-specific gene integration across human primary cells.. This work expands the avian R2 resource and provides additional tools for all-RNA-mediated genome editing.

    Article Title: ATG4B-dependent processing of tandem-domain BmLC3 exposes a Tyr136-regulated C-terminal fragment
    Article Snippet: .. EGFP-BmLC3, EGFP-BmLC3(G248A), and an EGFP-tagged C-terminal BmLC3 construct beginning at residue 136 were generated in pcDNA3.1(+)-EGFP using restriction cloning or Gibson Assembly Master Mix (New England Biolabs, M5510). ..

    Article Title: Autism-associated SCN2A deficiency disrupts cortico-striatal circuitry in human brain assembloids.
    Article Snippet: Article Autism-associated SCN2A deficiency disrupts cortico-striatal circuitry in human brain assembloids

    Clone Assay:

    Article Title: Discovery and engineering of avian R2 retrotransposons for all-RNA-mediated targeted DNA integration in human cells.
    Article Snippet: To discover unknown retrotransposons for genomic integration in human cells, we searched 1,139 avian genomes, identified 159 avian R2 retrotransposons and characterized conserved/nonconserved sequence features in their proteins and untranslated region elements.. Engineered variants of these retrotransposons achieved up to 60% site-specific gene integration across human primary cells.. This work expands the avian R2 resource and provides additional tools for all-RNA-mediated genome editing.

    Article Title: tRNA dosage regulates lineage dependency and resistance in prostate cancer.
    Article Snippet: .. The EYFP sequence was cloned into Tet-pLKO-puro (Addgene, 21915) by Gibson assembly (NEB, E2611L). .. shScramble, shUCU, shCCG and shUCG oligonucleotide sequences (see Supplementary Table 9 for details) were amplified using Q5 high-fidelity 2× master mix (NEB, M0492S) and cloned into Tet-pLKO.1-puro-EYFP using Gibson assembly following enzyme digest with AgeI and EcoRI.

    Article Title: Targeting CD28 on T lineage malignancies with chimeric antigen receptor T cells.
    Article Snippet: CAR molecules without tag were stained with recombinant FITC-labeled human CD28 (AcroBio). .. Retroviral transduction of primary T cells For retroviral transduction, 2nd generation anti-CD19, anti-CD7 and anti-CD28 CAR sequences containing FMC63, 3A1f or one of five CD28 scFvs containing CD8 transmembrane and spacer domains and either 41BB, CD28 or 28BB costimulatory domain were cloned into pMP71 (kindly provided by Christopher Baum, Medizinische Hochschule Hannover, Hannover, Germany) via EcoRI and NotI using Gibson Assembly Master Mix (NEB)39. ..

    Sequencing:

    Article Title: tRNA dosage regulates lineage dependency and resistance in prostate cancer.
    Article Snippet: .. The EYFP sequence was cloned into Tet-pLKO-puro (Addgene, 21915) by Gibson assembly (NEB, E2611L). .. shScramble, shUCU, shCCG and shUCG oligonucleotide sequences (see Supplementary Table 9 for details) were amplified using Q5 high-fidelity 2× master mix (NEB, M0492S) and cloned into Tet-pLKO.1-puro-EYFP using Gibson assembly following enzyme digest with AgeI and EcoRI.

    Retroviral:

    Article Title: Targeting CD28 on T lineage malignancies with chimeric antigen receptor T cells.
    Article Snippet: CAR molecules without tag were stained with recombinant FITC-labeled human CD28 (AcroBio). .. Retroviral transduction of primary T cells For retroviral transduction, 2nd generation anti-CD19, anti-CD7 and anti-CD28 CAR sequences containing FMC63, 3A1f or one of five CD28 scFvs containing CD8 transmembrane and spacer domains and either 41BB, CD28 or 28BB costimulatory domain were cloned into pMP71 (kindly provided by Christopher Baum, Medizinische Hochschule Hannover, Hannover, Germany) via EcoRI and NotI using Gibson Assembly Master Mix (NEB)39. ..

    Transduction:

    Article Title: Targeting CD28 on T lineage malignancies with chimeric antigen receptor T cells.
    Article Snippet: CAR molecules without tag were stained with recombinant FITC-labeled human CD28 (AcroBio). .. Retroviral transduction of primary T cells For retroviral transduction, 2nd generation anti-CD19, anti-CD7 and anti-CD28 CAR sequences containing FMC63, 3A1f or one of five CD28 scFvs containing CD8 transmembrane and spacer domains and either 41BB, CD28 or 28BB costimulatory domain were cloned into pMP71 (kindly provided by Christopher Baum, Medizinische Hochschule Hannover, Hannover, Germany) via EcoRI and NotI using Gibson Assembly Master Mix (NEB)39. ..

    Residue:

    Article Title: ATG4B-dependent processing of tandem-domain BmLC3 exposes a Tyr136-regulated C-terminal fragment
    Article Snippet: .. EGFP-BmLC3, EGFP-BmLC3(G248A), and an EGFP-tagged C-terminal BmLC3 construct beginning at residue 136 were generated in pcDNA3.1(+)-EGFP using restriction cloning or Gibson Assembly Master Mix (New England Biolabs, M5510). ..

    Generated:

    Article Title: ATG4B-dependent processing of tandem-domain BmLC3 exposes a Tyr136-regulated C-terminal fragment
    Article Snippet: .. EGFP-BmLC3, EGFP-BmLC3(G248A), and an EGFP-tagged C-terminal BmLC3 construct beginning at residue 136 were generated in pcDNA3.1(+)-EGFP using restriction cloning or Gibson Assembly Master Mix (New England Biolabs, M5510). ..

    Article Title: Autism-associated SCN2A deficiency disrupts cortico-striatal circuitry in human brain assembloids.
    Article Snippet: Article Autism-associated SCN2A deficiency disrupts cortico-striatal circuitry in human brain assembloids

    Cloning:

    Article Title: ATG4B-dependent processing of tandem-domain BmLC3 exposes a Tyr136-regulated C-terminal fragment
    Article Snippet: .. EGFP-BmLC3, EGFP-BmLC3(G248A), and an EGFP-tagged C-terminal BmLC3 construct beginning at residue 136 were generated in pcDNA3.1(+)-EGFP using restriction cloning or Gibson Assembly Master Mix (New England Biolabs, M5510). ..

    Polymerase Chain Reaction:

    Article Title: Autism-associated SCN2A deficiency disrupts cortico-striatal circuitry in human brain assembloids.
    Article Snippet: Article Autism-associated SCN2A deficiency disrupts cortico-striatal circuitry in human brain assembloids

    Article Title: Dual roles of host N-glycosylation in enteropathogenic Escherichia coli infection.
    Article Snippet: .. DNA fragments were amplified by PCR using primers listed in Table S7 and assembled using Gibson Assembly Master Mix (New England Biolabs) according to the manufacturer’s instructions. ..

    Amplification:

    Article Title: Autism-associated SCN2A deficiency disrupts cortico-striatal circuitry in human brain assembloids.
    Article Snippet: Article Autism-associated SCN2A deficiency disrupts cortico-striatal circuitry in human brain assembloids

    Article Title: Dual roles of host N-glycosylation in enteropathogenic Escherichia coli infection.
    Article Snippet: .. DNA fragments were amplified by PCR using primers listed in Table S7 and assembled using Gibson Assembly Master Mix (New England Biolabs) according to the manufacturer’s instructions. ..

    Purification:

    Article Title: Generation of a recombinant, antibiotic resistance gene-free Leishmania tarentolae strain as a live vaccine platform
    Article Snippet: The PCR product was purified from 0.8% agarose gel using the Wizard SV Gel and PCR Clean-Up System (Promega). .. Approximately 100 ng of linearized pLEXSY-noNeor vector and ~ 27 ng of the purified insert was mixed with Gibson Assembly Master Mix (New England Biolabs, NEB, USA) and incubated at 50 °C for 60 min. ..

    Incubation:

    Article Title: Generation of a recombinant, antibiotic resistance gene-free Leishmania tarentolae strain as a live vaccine platform
    Article Snippet: The PCR product was purified from 0.8% agarose gel using the Wizard SV Gel and PCR Clean-Up System (Promega). .. Approximately 100 ng of linearized pLEXSY-noNeor vector and ~ 27 ng of the purified insert was mixed with Gibson Assembly Master Mix (New England Biolabs, NEB, USA) and incubated at 50 °C for 60 min. ..



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    Silencing of integrin a6 in MES-GSCs does not have an impact on stemness and self-renewal. ( A , C ) Representative Western blot of the lentiviral-based <t>shRNA</t> silencing of ITGA6 in PN-GIC2 ( A ) and MES-GSCs ( C ). The values indicated within blots are relative to the densitometric analysis. Numbers indicate the normalized integrin a6 intensity ratio relative to the mean of <t>normalized</t> <t>shCTRL</t> samples. ( B ) Assessment of self-renewal capacity (mean ± SEM; n = 3; unpaired t -test) and sphere size (mean ± SEM; n = 3; Mann–Whitney test) in PN-GSCs silenced for ITGA6 . Micrographs from representative fields of gliomaspheres (scale bar = 100 µm). ( D ) Self-renewal capacity (mean ± SEM; n = 4; unpaired t -test) and sphere size (mean ± SEM; n = 4; Mann–Whitney test) in MES-GSCs silenced for ITGA6 . The number of independent experiments— n , the number of gliomaspheres scored for each condition—N. The values specified within the bar plot indicate the mean relative self-renewal capacity. ( E ) Transcript levels of ITGA6 and NES detected by means of qPCR in shITGA6 PN-GSCs and MES-GSCs (mean ± SEM; n = 3; unpaired t -test). ( F ) Relative transcript amount of ALDH1A3 , a specific MES stem cell marker, in shITGA6 MES-GSCs (mean ± SEM; n = 3; unpaired t -test). *** p < 0.001; **** p < 0.0001.
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    Image Search Results


    Silencing of integrin a6 in MES-GSCs does not have an impact on stemness and self-renewal. ( A , C ) Representative Western blot of the lentiviral-based shRNA silencing of ITGA6 in PN-GIC2 ( A ) and MES-GSCs ( C ). The values indicated within blots are relative to the densitometric analysis. Numbers indicate the normalized integrin a6 intensity ratio relative to the mean of normalized shCTRL samples. ( B ) Assessment of self-renewal capacity (mean ± SEM; n = 3; unpaired t -test) and sphere size (mean ± SEM; n = 3; Mann–Whitney test) in PN-GSCs silenced for ITGA6 . Micrographs from representative fields of gliomaspheres (scale bar = 100 µm). ( D ) Self-renewal capacity (mean ± SEM; n = 4; unpaired t -test) and sphere size (mean ± SEM; n = 4; Mann–Whitney test) in MES-GSCs silenced for ITGA6 . The number of independent experiments— n , the number of gliomaspheres scored for each condition—N. The values specified within the bar plot indicate the mean relative self-renewal capacity. ( E ) Transcript levels of ITGA6 and NES detected by means of qPCR in shITGA6 PN-GSCs and MES-GSCs (mean ± SEM; n = 3; unpaired t -test). ( F ) Relative transcript amount of ALDH1A3 , a specific MES stem cell marker, in shITGA6 MES-GSCs (mean ± SEM; n = 3; unpaired t -test). *** p < 0.001; **** p < 0.0001.

    Journal: Cancers

    Article Title: Dual Role of Integrin Alpha-6 in Glioblastoma: Supporting Stemness in Proneural Stem-Like Cells While Inducing Radioresistance in Mesenchymal Stem-Like Cells

    doi: 10.3390/cancers13123055

    Figure Lengend Snippet: Silencing of integrin a6 in MES-GSCs does not have an impact on stemness and self-renewal. ( A , C ) Representative Western blot of the lentiviral-based shRNA silencing of ITGA6 in PN-GIC2 ( A ) and MES-GSCs ( C ). The values indicated within blots are relative to the densitometric analysis. Numbers indicate the normalized integrin a6 intensity ratio relative to the mean of normalized shCTRL samples. ( B ) Assessment of self-renewal capacity (mean ± SEM; n = 3; unpaired t -test) and sphere size (mean ± SEM; n = 3; Mann–Whitney test) in PN-GSCs silenced for ITGA6 . Micrographs from representative fields of gliomaspheres (scale bar = 100 µm). ( D ) Self-renewal capacity (mean ± SEM; n = 4; unpaired t -test) and sphere size (mean ± SEM; n = 4; Mann–Whitney test) in MES-GSCs silenced for ITGA6 . The number of independent experiments— n , the number of gliomaspheres scored for each condition—N. The values specified within the bar plot indicate the mean relative self-renewal capacity. ( E ) Transcript levels of ITGA6 and NES detected by means of qPCR in shITGA6 PN-GSCs and MES-GSCs (mean ± SEM; n = 3; unpaired t -test). ( F ) Relative transcript amount of ALDH1A3 , a specific MES stem cell marker, in shITGA6 MES-GSCs (mean ± SEM; n = 3; unpaired t -test). *** p < 0.001; **** p < 0.0001.

    Article Snippet: Non-targeting shRNA construct (shCTRL; source clone ID: RHS4348) and shITGA6 plasmid mapping against ITGA6 exon 15 (target sequence: AGGATATTGCTTTAGAAAT; source clone ID: V3LHS_326014) were purchased from Thermo-Scientific.

    Techniques: Western Blot, shRNA, MANN-WHITNEY, Marker