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Novogene sequencing run data quality control
Sequencing Run Data Quality Control, supplied by Novogene, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/sequencing+data+quality+control/control+quality/us12485110-251-0-9
Average 86 stars, based on 1 article reviews
sequencing run data quality control - by Bioz Stars, 2026-09
86/100 stars

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Related Articles

Sequencing:

Article Title: Use of ergothioneine for extending lifespan or improving healthspan
Article Snippet: .. Sequencing run data quality control was performed both by Novogene and again by inventors of this application. ..

Article Title: TDRD3, a Tudor domain-containing protein, regulates Klf2 -dependent T reg differentiation and function to modulate immune tolerance
Article Snippet: .. RNA quality control, library construction, and sequencing were performed by Novogene. .. The analysis was performed using Illumina Partek Flow version 12.8.1.

Article Title: Virome profiling of Culex tarsalis through small RNA-seq: A challenge of suboptimal samples.
Article Snippet: .. Pre-sequencing RNA quality control results provided by the sequencing facility (Novogene). ..

Article Title: VPS13 has an important role in female germline development in Arabidopsis
Article Snippet: RNA integrity was analyzed by gel electrophoresis and by spectrophotometry before submission to the sequencing facility of the Novogene company, https://www.novogene.com/us‐en/ . .. Novogene had performed RNA sample quality control, RNA and small RNA library preparation, and sequencing by NovaSeq SE50 (150 bp and 50 bp single‐read, 20 m raw reads per sample, respectively). ..

Article Title: A Species-Specific Assay for Salmo cf. trutta and Its Application in eDNA-Based Spawning Activity Monitoring
Article Snippet: .. PCR amplification, PCR amplicon quality control, amplicon library preparation, and Illumina (San Diego, CA, USA) NovaSeq PE250 sequencing (2 × 250 bp paired-end reads) were performed by Novogene (Cambridge, UK). .. Quality of the obtained Illumina reads was assessed using the software fastp v.0.23.1 [30] and primers were removed using the software cutadapt v.3.3 [31].

Control:

Article Title: Use of ergothioneine for extending lifespan or improving healthspan
Article Snippet: .. Sequencing run data quality control was performed both by Novogene and again by inventors of this application. ..

Article Title: TDRD3, a Tudor domain-containing protein, regulates Klf2 -dependent T reg differentiation and function to modulate immune tolerance
Article Snippet: .. RNA quality control, library construction, and sequencing were performed by Novogene. .. The analysis was performed using Illumina Partek Flow version 12.8.1.

Article Title: Extracellular vesicles derived from pro-inflammatory M1 macrophages induce an inflammatory and invasive phenotype in melanoma cells
Article Snippet: Total RNA was extracted using RNeasy Plus Mini Kit (74134, Qiagen). .. RNA samples (n = 3 per group) were sent to Novogene (Germany) for quality control, directional mRNA library preparation with poly A enrichment and strand specific mRNA-sequencing with NovaSeq X Plus Series (PE150). ..

Article Title: Virome profiling of Culex tarsalis through small RNA-seq: A challenge of suboptimal samples.
Article Snippet: .. Pre-sequencing RNA quality control results provided by the sequencing facility (Novogene). ..

Article Title: VPS13 has an important role in female germline development in Arabidopsis
Article Snippet: RNA integrity was analyzed by gel electrophoresis and by spectrophotometry before submission to the sequencing facility of the Novogene company, https://www.novogene.com/us‐en/ . .. Novogene had performed RNA sample quality control, RNA and small RNA library preparation, and sequencing by NovaSeq SE50 (150 bp and 50 bp single‐read, 20 m raw reads per sample, respectively). ..

Article Title: A Species-Specific Assay for Salmo cf. trutta and Its Application in eDNA-Based Spawning Activity Monitoring
Article Snippet: .. PCR amplification, PCR amplicon quality control, amplicon library preparation, and Illumina (San Diego, CA, USA) NovaSeq PE250 sequencing (2 × 250 bp paired-end reads) were performed by Novogene (Cambridge, UK). .. Quality of the obtained Illumina reads was assessed using the software fastp v.0.23.1 [30] and primers were removed using the software cutadapt v.3.3 [31].

Activity Assay:

Article Title: The genetic repertoire of the deep sea: from sequence to structure and function
Article Snippet: The genome DNA was extracted using the TIANamp Genomic DNA Kit (TIANGEN). .. The genome editing activity was detected by next-generation sequencing with a PCR amplicon library (Novogene). ..

Next-Generation Sequencing:

Article Title: The genetic repertoire of the deep sea: from sequence to structure and function
Article Snippet: The genome DNA was extracted using the TIANamp Genomic DNA Kit (TIANGEN). .. The genome editing activity was detected by next-generation sequencing with a PCR amplicon library (Novogene). ..

Polymerase Chain Reaction:

Article Title: The genetic repertoire of the deep sea: from sequence to structure and function
Article Snippet: The genome DNA was extracted using the TIANamp Genomic DNA Kit (TIANGEN). .. The genome editing activity was detected by next-generation sequencing with a PCR amplicon library (Novogene). ..

Article Title: A Species-Specific Assay for Salmo cf. trutta and Its Application in eDNA-Based Spawning Activity Monitoring
Article Snippet: .. PCR amplification, PCR amplicon quality control, amplicon library preparation, and Illumina (San Diego, CA, USA) NovaSeq PE250 sequencing (2 × 250 bp paired-end reads) were performed by Novogene (Cambridge, UK). .. Quality of the obtained Illumina reads was assessed using the software fastp v.0.23.1 [30] and primers were removed using the software cutadapt v.3.3 [31].

Amplification:

Article Title: The genetic repertoire of the deep sea: from sequence to structure and function
Article Snippet: The genome DNA was extracted using the TIANamp Genomic DNA Kit (TIANGEN). .. The genome editing activity was detected by next-generation sequencing with a PCR amplicon library (Novogene). ..

Article Title: A Species-Specific Assay for Salmo cf. trutta and Its Application in eDNA-Based Spawning Activity Monitoring
Article Snippet: .. PCR amplification, PCR amplicon quality control, amplicon library preparation, and Illumina (San Diego, CA, USA) NovaSeq PE250 sequencing (2 × 250 bp paired-end reads) were performed by Novogene (Cambridge, UK). .. Quality of the obtained Illumina reads was assessed using the software fastp v.0.23.1 [30] and primers were removed using the software cutadapt v.3.3 [31].

RNA Library Preparation:

Article Title: VPS13 has an important role in female germline development in Arabidopsis
Article Snippet: RNA integrity was analyzed by gel electrophoresis and by spectrophotometry before submission to the sequencing facility of the Novogene company, https://www.novogene.com/us‐en/ . .. Novogene had performed RNA sample quality control, RNA and small RNA library preparation, and sequencing by NovaSeq SE50 (150 bp and 50 bp single‐read, 20 m raw reads per sample, respectively). ..



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General analysis in Trichoderma atroviride T11-treated (T11) Solanum lycopersicum or untreated (C) plants libraries. ( A ) Length distribution and abundance of the miRNAs that showed at least 10 read counts against their miRNA* sequence in S. lycopersicum plants treated (T11) or not (C). The percentage is calculated over the total number of reads that aligned to the miRNA candidates identified in plants from both conditions (including those with less than 10 read counts against their miRNA* sequence and/or those that were solely transcribed in one sample per condition). The length of the miRNAs identified ranged from 20–24 nt; ( B ) Venn diagram showing the number of miRNAs (that displayed at least 10 read counts against their miRNA* sequence) identified in both conditions, solely in T11 (green) or in untreated control plants (blue).

Journal: International Journal of Molecular Sciences

Article Title: Identification of Tomato microRNAs in Late Response to Trichoderma atroviride

doi: 10.3390/ijms25031617

Figure Lengend Snippet: General analysis in Trichoderma atroviride T11-treated (T11) Solanum lycopersicum or untreated (C) plants libraries. ( A ) Length distribution and abundance of the miRNAs that showed at least 10 read counts against their miRNA* sequence in S. lycopersicum plants treated (T11) or not (C). The percentage is calculated over the total number of reads that aligned to the miRNA candidates identified in plants from both conditions (including those with less than 10 read counts against their miRNA* sequence and/or those that were solely transcribed in one sample per condition). The length of the miRNAs identified ranged from 20–24 nt; ( B ) Venn diagram showing the number of miRNAs (that displayed at least 10 read counts against their miRNA* sequence) identified in both conditions, solely in T11 (green) or in untreated control plants (blue).

Article Snippet: Quality control of the sequencing data and the identification of known and novel miRNA candidates were performed by Sequentia Biotech S.L. (Barcelona, Spain) as follows.

Techniques: Sequencing, Control