standard 1000 genomes human reference sequences version b37 (Broad Institute Inc)
90
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Broad Institute Inc
standard 1000 genomes human reference sequences version b37
Standard 1000 Genomes Human Reference Sequences Version B37, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/sequence+standard+reference/1000+genomes+human+reference+sequences+version+b37/pmc05685720-170-12-27
Average 90 stars, based on 1 article reviews
Standard 1000 Genomes Human Reference Sequences Version B37, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/sequence+standard+reference/1000+genomes+human+reference+sequences+version+b37/pmc05685720-170-12-27
Average 90 stars, based on 1 article reviews
standard 1000 genomes human reference sequences version b37 - by Bioz Stars,
2026-10
90/100 stars
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other:Article Title: Single-cell phylogenies reveal changes in the evolutionary rate within cancer and healthy tissues Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Deposited data 1000G Reference Genome hs37d5, GRCh37 Genome Reference Consortium https://www.internationalgenome. org/category/reference/ GATK Resource Bundle b37 Broad Institute https://console.cloud.google.com/storage/browser/ genomics-public-data/resources/broad/hg38/v0/ scDNA WES data Li Li et al.82 SRA: SRA051489 scDNA WES data Hou Hou et al.83 SRA: SRA050202 scDNA WES data Wang Wang et al.84 SRA: SRA053195 scDNA WGS data Kang Kang et al.48 SRA: SRP067815 scDNA WES data Wu Wu et al.85 SRA: SRP067815 scDNA WES data Xu Xu et al.86 SRA: SRA050201 scDNA WES data Ni Ni et al.87 SRA: SRP029757 scDNA WGS data Lodato Lodato et al.87 SRA: SRP041470, SRP061939 scDNA WGS data Su Su et al.88 SRA: SRP127755 scDNA WGS data Alves Alves et al.89 Mendeley Data: https://doi.org/10.17632/pbbx6gckck.1 scDNA WGS data Kozlov Kozlov et al.47 BioProject: PRJNA789841 Software and algorithms PT test This paper https://doi.org/10.5281/zenodo.7998185 Python v3.7.6 with packages numpy v1.18.5, pandas v1.0.5, scipy v1.5.1, and ete3 v3.1.2 Python Software Foundation https://www.python.org CellCoal v1.3.1 Posada50 https://github.com/dapogon/cellcoal Cellphy v0.9.2 Kozlov et al.47 https://github.com/amkozlov/cellphy infSCITE Kuipers et al.52 https://github.com/cbg-ethz/infSCITE neutralitytestr v0.0.3 Williams et al.22 https://CRAN.R-project.org/package=neutralitytestr Mobster v1.0.0 Caravagna et al.90 https://caravagnalab.github.io/mobster dndscv v0.1.0 Martincorena et al.11 https://github.com/im3sanger/dndscv cutadapt v1.18 Martin et al.91 https://github.com/marcelm/cutadapt bwa v0.7.17 Li et al.92 https://github.com/lh3/bwa Picard SortSam v2.18.14 Broad Institute https://broadinstitute.github.io/picard/ Picard MarkDuplicates v2.18.14 Broad Institute https://broadinstitute.github.io/picard/ GATK IndelRealignement v3.7.0 Broad Institute https://gatk.broadinstitute.org/hc/en-us GATK BaseRecalibrator v4.0.10 Broad Institute https://gatk.broadinstitute.org/hc/en-us samtools v1.9 Danecek et al.93 https://www.htslib.org/ Sequenza, v3.0.0 Favero et al.94 https://github.com/oicr-gsi/sequenza SCCcaller v2.0.0 Dong et al.95 https://github.com/NBMueller/SCcaller Monovar Zafar et al.96 https://github.com/NBMueller/MonoVar Ensembl Variant Effect Predictor, release/100.0 McLaren et al.97 https://github.com/Ensembl/ensembl-vep Article Title: Mechanism of KMT5B haploinsufficiency in neurodevelopment in humans and mice. Article Snippet: DRAGEN was then used to align these files to the Homo sapiens (GRCh37.75) reference genome from the Broad Institute with a Smith-Waterman alignment scoring algorithm (63). Article Title: Patient-Derived Tumor Organoids for Guidance of Personalized Drug Therapies in Recurrent Glioblastoma. Article Snippet: The reference genome GRCh 37 was downloaded from Broad Institute. Sequencing:Article Title: A Modified Nucleoside 6-Thio-2′-Deoxyguanosine Exhibits Antitumor Activity in Gliomas Article Snippet: Germline and cell line genomic DNA were subjected to exome capture with the Agilent Sure Select Human All Exon V6 kit (Agilent) and sequenced on the HiSeq PE150 platform (Illumina), all performed by Novogene Corporation Inc. .. The raw fastq sequence files were aligned to |