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BioNano Genomics optical map sequencing data
Optical Map Sequencing Data, supplied by BioNano Genomics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/sequence+map/optical+map+sequencing+data/pmc08764390-75-4-11
Average 90 stars, based on 1 article reviews
optical map sequencing data - by Bioz Stars, 2026-09
90/100 stars

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Related Articles

Sequencing:

Article Title: Chromosome-level genome assembly of Ophiorrhiza pumila reveals the evolution of camptothecin biosynthesis
Article Snippet: Default parameters were used for Falcon-Phase software, and the resulting contig-level phased haplotigs of O. pumila were used to derive completely phased chromosome-level genome assembly. .. Acquired Bionano optical maps sequencing datasets were filtered using length cutoff as 150 Kb. ..

Article Title: Rapid Genome Evolution and Adaptation of Thlaspi arvense Mediated by Recurrent RNA-Based and Tandem Gene Duplications
Article Snippet: .. We also collected 4.6 Gb optical map sequencing data from the BioNano Genomics Saphyr platform and 32.3 Gb Hi-C high-throughput chromosome conformation capture sequencing data. ..

Article Title: Quartet DNA reference materials and datasets for comprehensively evaluating germline variant calling performance.
Article Snippet: To unbiasedly characterize germline small variants and SV benchmark calls, we sequenced all four Quartet genomes on four short-read (Illumina HiSeq and NovaSeq, MGI MGISEQ-2000, and DNBSEQ-T7 (30-60x coverage)) and three long-read (Oxford Nanopore Technologies (ONT) (100× coverage), Pacific Biosciences (PacBio) Sequel (80× coverage), and PacBio Sequel II (30× coverage)) sequencing platforms at seven centers. .. We then used four orthogonal technologies, including linked read sequencing (10× Genomics (30× coverage)), SNP array (the Axiom Precision Medicine Research Array (PMRA)), optical sequencing (BioNano), and PacBio circular consensus sequencing (CCS) reads (50× coverage) to validate and refine the benchmark calls (Fig. 1a and Additional file 2: Table S1). ..

Hi-C:

Article Title: Rapid Genome Evolution and Adaptation of Thlaspi arvense Mediated by Recurrent RNA-Based and Tandem Gene Duplications
Article Snippet: .. We also collected 4.6 Gb optical map sequencing data from the BioNano Genomics Saphyr platform and 32.3 Gb Hi-C high-throughput chromosome conformation capture sequencing data. ..

Clinical Proteomics:

Article Title: Quartet DNA reference materials and datasets for comprehensively evaluating germline variant calling performance.
Article Snippet: To unbiasedly characterize germline small variants and SV benchmark calls, we sequenced all four Quartet genomes on four short-read (Illumina HiSeq and NovaSeq, MGI MGISEQ-2000, and DNBSEQ-T7 (30-60x coverage)) and three long-read (Oxford Nanopore Technologies (ONT) (100× coverage), Pacific Biosciences (PacBio) Sequel (80× coverage), and PacBio Sequel II (30× coverage)) sequencing platforms at seven centers. .. We then used four orthogonal technologies, including linked read sequencing (10× Genomics (30× coverage)), SNP array (the Axiom Precision Medicine Research Array (PMRA)), optical sequencing (BioNano), and PacBio circular consensus sequencing (CCS) reads (50× coverage) to validate and refine the benchmark calls (Fig. 1a and Additional file 2: Table S1). ..



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