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multilocus sequence type (mlst) (Ridom GmbH)

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Ridom GmbH multilocus sequence type (mlst)
Illustration of the collected samples and recovered isolates. ST indicates sequence type. cgMLST indicates core genome <t>multilocus</t> sequence typing. Asterisk indicates two ST958 isolates that were left out of the cgMLST scheme due to poor sequence quality.

Illustration of the collected samples and recovered isolates. ST indicates sequence type. cgMLST indicates core genome <t>multilocus</t> sequence typing. Asterisk indicates two ST958 isolates that were left out of the cgMLST scheme due to poor sequence quality.

Multilocus Sequence Type (Mlst), supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/sequence+databases/pmc10250652-154-6-15?v=Ridom+GmbH
Average 90 stars, based on 1 article reviews

multilocus sequence type (mlst) - by Bioz Stars, 2026-07

90/100 stars

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1) Product Images from "Genomic epidemiology of nosocomial carbapenemase-producing Citrobacter freundii in sewerage systems in the Helsinki metropolitan area, Finland"

Article Title: Genomic epidemiology of nosocomial carbapenemase-producing Citrobacter freundii in sewerage systems in the Helsinki metropolitan area, Finland

Journal: Frontiers in Microbiology

doi: 10.3389/fmicb.2023.1165751

Illustration of the collected samples and recovered isolates. ST indicates sequence type. cgMLST indicates core genome multilocus sequence typing. Asterisk indicates two ST958 isolates that were left out of the cgMLST scheme due to poor sequence quality.

Figure Legend Snippet: Illustration of the collected samples and recovered isolates. ST indicates sequence type. cgMLST indicates core genome multilocus sequence typing. Asterisk indicates two ST958 isolates that were left out of the cgMLST scheme due to poor sequence quality.

Techniques Used: Sequencing

Genomic characteristics for the 32 Citrobacter freundii isolated from post-cleaning hospital environment sampling (HE, n = 12) and untreated municipal wastewater (WW, n = 20).

Figure Legend Snippet: Genomic characteristics for the 32 Citrobacter freundii isolated from post-cleaning hospital environment sampling (HE, n = 12) and untreated municipal wastewater (WW, n = 20).

Techniques Used: Isolation, Sampling, Transmission Electron Microscopy, Bla VIM Assay

A minimum spanning tree of ad hoc core genome multilocus sequence typing (cgMLST) of 51 carbapenemase-producing Citrobacter freundii isolates, forming clusters 1 (ST18), 2 (ST8), and 3 (ST421). Each circle represents one or multiple identical sequences, and the numbers between the circles indicate the allele differences. Text in the circle indicates the isolate identification number and sample month/year; colors indicate the sample type [human specimen (yellow), hospital environment (green), and untreated municipal wastewater (blue)]. Human specimen isolates (1–6) originated from the national CPE strain collection and were obtained from clinical specimens (isolates 1, 2, and 5), screening specimens (isolates 3 and 4), and an unspecified sample type (isolate 6). Isolates 1–4 have been published previously by Räisänen et al. . The seed genome was NZ_CP007557.1, and the cgMLST was based on 2007 targets, pairwise ignoring missing values.

Figure Legend Snippet: A minimum spanning tree of ad hoc core genome multilocus sequence typing (cgMLST) of 51 carbapenemase-producing Citrobacter freundii isolates, forming clusters 1 (ST18), 2 (ST8), and 3 (ST421). Each circle represents one or multiple identical sequences, and the numbers between the circles indicate the allele differences. Text in the circle indicates the isolate identification number and sample month/year; colors indicate the sample type [human specimen (yellow), hospital environment (green), and untreated municipal wastewater (blue)]. Human specimen isolates (1–6) originated from the national CPE strain collection and were obtained from clinical specimens (isolates 1, 2, and 5), screening specimens (isolates 3 and 4), and an unspecified sample type (isolate 6). Isolates 1–4 have been published previously by Räisänen et al. . The seed genome was NZ_CP007557.1, and the cgMLST was based on 2007 targets, pairwise ignoring missing values.