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t. gondii pru rna sequence data (Oxford Nanopore)

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Oxford Nanopore t. gondii pru rna sequence data

Comparative analysis of genome assemblies of Neospora caninum and <t>Toxoplasma</t> <t>gondii</t> using third-generation sequencing data reveals misassembly and karyotype differences. ( A ) Comparative analysis of the T. gondii type II ( Tg ME49) genome assembly and the N. caninum Liverpool ( Nc Liv) strain genome assembly, obtained based on Sanger technology sequencing data. ( B ) Comparative alignment of the Nc Liv genome assemblies using Sanger and third-generation (long-read) technology. ( C ) Comparative alignment of the T. gondii type II ( Tg ME49) genome assemblies based on Sanger technology sequencing data or third-generation (long-read) technology of T. gondii type I ( Tg RH). ( D ) Comparative alignment of the T. gondii type I ( Tg RH) and the Nc Liv genome assemblies based on third-generation (long-read) sequencing technology. ( E ) Chromosomal layout of N. caninum . Karyotype, chromosome length, telomeres, putative centromeres, and large repeats are shown.

T. Gondii Pru Rna Sequence Data, supplied by Oxford Nanopore, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/sequence+data/pmc08092007-157-4-11?v=Oxford+Nanopore
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t. gondii pru rna sequence data - by Bioz Stars, 2026-07

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Article Title: Reevaluation of the Toxoplasma gondii and Neospora caninum genomes reveals misassembly, karyotype differences, and chromosomal rearrangements

Journal: Genome Research

doi: 10.1101/gr.262832.120

Comparative analysis of genome assemblies of Neospora caninum and Toxoplasma gondii using third-generation sequencing data reveals misassembly and karyotype differences. ( A ) Comparative analysis of the T. gondii type II ( Tg ME49) genome assembly and the N. caninum Liverpool ( Nc Liv) strain genome assembly, obtained based on Sanger technology sequencing data. ( B ) Comparative alignment of the Nc Liv genome assemblies using Sanger and third-generation (long-read) technology. ( C ) Comparative alignment of the T. gondii type II ( Tg ME49) genome assemblies based on Sanger technology sequencing data or third-generation (long-read) technology of T. gondii type I ( Tg RH). ( D ) Comparative alignment of the T. gondii type I ( Tg RH) and the Nc Liv genome assemblies based on third-generation (long-read) sequencing technology. ( E ) Chromosomal layout of N. caninum . Karyotype, chromosome length, telomeres, putative centromeres, and large repeats are shown.

Figure Legend Snippet: Comparative analysis of genome assemblies of Neospora caninum and Toxoplasma gondii using third-generation sequencing data reveals misassembly and karyotype differences. ( A ) Comparative analysis of the T. gondii type II ( Tg ME49) genome assembly and the N. caninum Liverpool ( Nc Liv) strain genome assembly, obtained based on Sanger technology sequencing data. ( B ) Comparative alignment of the Nc Liv genome assemblies using Sanger and third-generation (long-read) technology. ( C ) Comparative alignment of the T. gondii type II ( Tg ME49) genome assemblies based on Sanger technology sequencing data or third-generation (long-read) technology of T. gondii type I ( Tg RH). ( D ) Comparative alignment of the T. gondii type I ( Tg RH) and the Nc Liv genome assemblies based on third-generation (long-read) sequencing technology. ( E ) Chromosomal layout of N. caninum . Karyotype, chromosome length, telomeres, putative centromeres, and large repeats are shown.

Techniques Used: Sequencing

Regions of synteny breaks between N. caninum and T. gondii are populated by three conserved domains. ( A ) Sequence identity of domains identified at regions where chromosomal rearrangements have occurred. ( B ) Graphical representation of Chromosome VIII of Nc Liv. Comparative alignment to the T. gondii chromosomes. Percentages of sequence identity are shown. Regions examined for the presence of motifs are indicated (light green). The position of the putative centromere is indicated in orange. Note that large repetitive regions were not identified in this chromosome. 5′ (light purple) and 3′ (dark purple) telomeres are indicated. The identity and number of domains found per region, in Chromosome VII, are indicated.

Figure Legend Snippet: Regions of synteny breaks between N. caninum and T. gondii are populated by three conserved domains. ( A ) Sequence identity of domains identified at regions where chromosomal rearrangements have occurred. ( B ) Graphical representation of Chromosome VIII of Nc Liv. Comparative alignment to the T. gondii chromosomes. Percentages of sequence identity are shown. Regions examined for the presence of motifs are indicated (light green). The position of the putative centromere is indicated in orange. Note that large repetitive regions were not identified in this chromosome. 5′ (light purple) and 3′ (dark purple) telomeres are indicated. The identity and number of domains found per region, in Chromosome VII, are indicated.

Techniques Used: Sequencing

Comparative analysis of mitochondrial genome structures and annotations of Neospora and Toxoplasma reveals gene fragmentation and reshuffling between species and strains. ( A ) The repetitive nature of the gene structure in a 32-kb mitochondrial DNA contig of Nc Liv is graphically represented in a YASS plot. ( B ) The repetitive nature of the gene structure in a 16-kb mitochondrial DNA contig of Nc Liv is graphically represented in a YASS plot. ( C ) Comparative alignment between two Nc Liv mitochondrial contigs of 16 and 32 kb, respectively. ( D ) Comparative alignment between a Nc Liv mitochondrial contig of 32 kb and a Nc Uru1 mitochondrial contig of 38 kb. ( E ) Comparative alignment between two Nc Uru1 mitochondrial contigs of 16 and 38 kb, respectively. ( F ) The repetitive nature of the gene structure in a 16-kb mitochondrial DNA contig of Nc Uru1 is graphically represented in a YASS plot. ( G ) Comparative alignment between a Nc Liv mitochondrial contig of 32 kb and a T. gondii mitochondrial contigs of 39 kb.

Figure Legend Snippet: Comparative analysis of mitochondrial genome structures and annotations of Neospora and Toxoplasma reveals gene fragmentation and reshuffling between species and strains. ( A ) The repetitive nature of the gene structure in a 32-kb mitochondrial DNA contig of Nc Liv is graphically represented in a YASS plot. ( B ) The repetitive nature of the gene structure in a 16-kb mitochondrial DNA contig of Nc Liv is graphically represented in a YASS plot. ( C ) Comparative alignment between two Nc Liv mitochondrial contigs of 16 and 32 kb, respectively. ( D ) Comparative alignment between a Nc Liv mitochondrial contig of 32 kb and a Nc Uru1 mitochondrial contig of 38 kb. ( E ) Comparative alignment between two Nc Uru1 mitochondrial contigs of 16 and 38 kb, respectively. ( F ) The repetitive nature of the gene structure in a 16-kb mitochondrial DNA contig of Nc Uru1 is graphically represented in a YASS plot. ( G ) Comparative alignment between a Nc Liv mitochondrial contig of 32 kb and a T. gondii mitochondrial contigs of 39 kb.

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