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1×1 m probe-selection microarray  (Agilent technologies)


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    Structured Review

    Agilent technologies 1×1 m probe-selection microarray
    Distribution of the best blastx hits that were matched to the isotigs (black) and the singletons (light grey) according to their taxonomic origin. (A) All transcripts (isotigs n = 16,824; singletons n = 24,129) that were matched to a BLASTX hit. (B) Transcripts (isotigs n = 16,537; singletons n = 4,7539) that were matched to a BLASTX hit and that are targeted by the final aGE <t>microarray.</t>
    1×1 M Probe Selection Microarray, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/selectivity+microarrays/pmc03485019-188-4-9
    Average 90 stars, based on 1 article reviews
    1×1 m probe-selection microarray - by Bioz Stars, 2026-10
    90/100 stars

    Images

    1) Product Images from "Combining Next-Generation Sequencing and Microarray Technology into a Transcriptomics Approach for the Non-Model Organism Chironomus riparius"

    Article Title: Combining Next-Generation Sequencing and Microarray Technology into a Transcriptomics Approach for the Non-Model Organism Chironomus riparius

    Journal: PLoS ONE

    doi: 10.1371/journal.pone.0048096

    Distribution of the best blastx hits that were matched to the isotigs (black) and the singletons (light grey) according to their taxonomic origin. (A) All transcripts (isotigs n = 16,824; singletons n = 24,129) that were matched to a BLASTX hit. (B) Transcripts (isotigs n = 16,537; singletons n = 4,7539) that were matched to a BLASTX hit and that are targeted by the final aGE microarray.
    Figure Legend Snippet: Distribution of the best blastx hits that were matched to the isotigs (black) and the singletons (light grey) according to their taxonomic origin. (A) All transcripts (isotigs n = 16,824; singletons n = 24,129) that were matched to a BLASTX hit. (B) Transcripts (isotigs n = 16,537; singletons n = 4,7539) that were matched to a BLASTX hit and that are targeted by the final aGE microarray.

    Techniques Used: Microarray

    Related Articles

    Real-time Polymerase Chain Reaction:

    Article Title: Overexpression of an alternative allele of carboxyl/choline esterase 4 (CCE04) of Tetranychus urticae is associated with high levels of resistance to the keto-enol acaricide spirodiclofen.
    Article Snippet: .. Alignment of qPCR primer sequences (suffix “_F” or “_R”; CCE04-3‟end, CCE04-inprobe, CCE04-London, CCE04-SR-VP; Table S1) and microarray probe sequences (CUST_124 and CUST_125 in Agilent microarray design 028213 11 ) with the CCE04 SR-VP and CCE04 London allele. ..

    Microarray:

    Article Title: Overexpression of an alternative allele of carboxyl/choline esterase 4 (CCE04) of Tetranychus urticae is associated with high levels of resistance to the keto-enol acaricide spirodiclofen.
    Article Snippet: .. Alignment of qPCR primer sequences (suffix “_F” or “_R”; CCE04-3‟end, CCE04-inprobe, CCE04-London, CCE04-SR-VP; Table S1) and microarray probe sequences (CUST_124 and CUST_125 in Agilent microarray design 028213 11 ) with the CCE04 SR-VP and CCE04 London allele. ..

    Article Title: Methods and gene expression signature for assessing growth factor signaling pathway regulation status
    Article Snippet: .. For each gene, an assay was selected using criteria such as distance from the Agilent microarray probe, PCR efficiency (NT RNA standards), and average Ct value on 2 ng of FFPE RNA input. ..

    Article Title: Proteomic analysis of mouse oocytes reveals 28 candidate factors of the "reprogrammome".
    Article Snippet: Proteomic Analysis of Mouse Oocytes Reveals 28 Candidate Factors of the “Reprogrammome” Martin J. Pfeiffer, Marcin Siatkowski, Yogesh Paudel, Sebastian T. Balbach, Nicole Baeumer, Nicola Crosetto, Hannes C. A. Drexler, Georg Fuellen,* and Michele Boiani* Max-Planck Institute for Molecular Biomedicine, Mouse Embryology Laboratory, R€ontgenstrasse 20, D-48149 M€unster, Germany Max-Planck Institute for Molecular Biomedicine, Bioanalytical Mass Spectrometry Facility, R€ontgenstrasse 20, D-48149 M€unster, Germany DZNE, German Center for Neurodegenerative Disorders, Gehlsheimer Strasse 20, D-18147 Rostock, Germany Institute for Biostatistics and Informatics in Medicine and Ageing Research, University of Rostock, Ernst Heydemann-Strasse 8, D-18057 Rostock, Germany Arrows Biomedical GmbH, Gievenbecker Weg 11, D-48149 M€unster, Germany Institute of Biochemistry II, Goethe University Medical School, Theodor-Stern-Kai Strasse 7, D-60590 Frankfurt am Main, Germany

    Article Title: Megakaryocytic Maturation in Response to Shear Flow Is Mediated by the Activator Protein 1 (AP-1) Transcription Factor via Mitogen-activated Protein Kinase (MAPK) Mechanotransduction
    Article Snippet: .. For each official gene symbol (column 1), the respective Agilent microarray probe name (column 2) and average fold-change of 3 biological replicates (column 3) is provided. ..

    Article Title: Age-related vascular gene expression profiling in mice.
    Article Snippet: Increasing age involves a number of detrimental changes in the cardiovascular system and particularly on the large arteries.. It deteriorates vascular integrity and leads to increased vascular stiffness entailing hypertension with increased cardiovascular morbidity and mortality.. The consequences of continuous oxidative stress and damages to biomolecules include altered gene expression, genomic instability, mutations, loss of cell division and cellular responses to increased stress.

    Article Title: Proteomic Screening of Human Targets of Viral microRNAs Reveals Functions Associated with Immune Evasion and Angiogenesis
    Article Snippet: .. Uniprot IDs from pSILAC data, Agilent microarray probe IDs, and TargetScan v5.0 Refseq IDs were mapped to Ensembl gene IDs. .. Data integration was performed using Ensembl gene IDs.

    Polymerase Chain Reaction:

    Article Title: Methods and gene expression signature for assessing growth factor signaling pathway regulation status
    Article Snippet: .. For each gene, an assay was selected using criteria such as distance from the Agilent microarray probe, PCR efficiency (NT RNA standards), and average Ct value on 2 ng of FFPE RNA input. ..

    Formalin-fixed Paraffin-Embedded:

    Article Title: Methods and gene expression signature for assessing growth factor signaling pathway regulation status
    Article Snippet: .. For each gene, an assay was selected using criteria such as distance from the Agilent microarray probe, PCR efficiency (NT RNA standards), and average Ct value on 2 ng of FFPE RNA input. ..

    other:

    Article Title: Combining Next-Generation Sequencing and Microarray Technology into a Transcriptomics Approach for the Non-Model Organism Chironomus riparius
    Article Snippet: The designed 1×1 M probe-selection microarray was obtained from Agilent Technologies and hybridized with C. riparius and A. gambiae genomic DNA (gDNA). gDNA was extracted from 30 pooled fertilized C. riparius egg ropes, respectively, 30 pooled unfed A. gambiae adults.



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    Image Search Results


    Distribution of the best blastx hits that were matched to the isotigs (black) and the singletons (light grey) according to their taxonomic origin. (A) All transcripts (isotigs n = 16,824; singletons n = 24,129) that were matched to a BLASTX hit. (B) Transcripts (isotigs n = 16,537; singletons n = 4,7539) that were matched to a BLASTX hit and that are targeted by the final aGE microarray.

    Journal: PLoS ONE

    Article Title: Combining Next-Generation Sequencing and Microarray Technology into a Transcriptomics Approach for the Non-Model Organism Chironomus riparius

    doi: 10.1371/journal.pone.0048096

    Figure Lengend Snippet: Distribution of the best blastx hits that were matched to the isotigs (black) and the singletons (light grey) according to their taxonomic origin. (A) All transcripts (isotigs n = 16,824; singletons n = 24,129) that were matched to a BLASTX hit. (B) Transcripts (isotigs n = 16,537; singletons n = 4,7539) that were matched to a BLASTX hit and that are targeted by the final aGE microarray.

    Article Snippet: The designed 1×1 M probe-selection microarray was obtained from Agilent Technologies and hybridized with C. riparius and A. gambiae genomic DNA (gDNA). gDNA was extracted from 30 pooled fertilized C. riparius egg ropes, respectively, 30 pooled unfed A. gambiae adults.

    Techniques: Microarray