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BioSolveIT GmbH seesar software v13.0.1
Seesar Software V13.0.1, supplied by BioSolveIT GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/seesar+software/seesar+12+1+software/pmc12148380-43-0-4
Average 90 stars, based on 1 article reviews
seesar software v13.0.1 - by Bioz Stars, 2026-11
90/100 stars

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Related Articles

Software:

Article Title: Coumarin-based Aldo-Keto Reductase Family 1C (AKR1C) 2 and 3 Inhibitors.
Article Snippet: This manuscript has been accepted after peer review and appears as an Accepted Article online prior to editing, proofing, and formal publication of the final Version of Record (VoR).. The VoR will be published online in Early View as soon as possible and may be different to this Accepted Article as a result of editing.. Readers should obtain the VoR from the journal website shown below when it is published to ensure accuracy of information.

Article Title: Mapping protein-metabolite interactions in E . coli by integrating chromatographic techniques and co-fractionation mass spectrometry
Article Snippet: SeeSAR software v13.0.1 , BioSolveIT , https://www.biosolveit.de/products/seesar/.

Article Title: Discovery of an Aldo-Keto reductase 1C3 (AKR1C3) degrader
Article Snippet: The PROTAC was prepared and docked using SeeSAR 12.1 software (BioSolveIT).

Article Title: Selective and brain-penetrant ACSS2 inhibitors target breast cancer brain metastatic cells
Article Snippet: To facilitate and improve confidence for hit selection, we continued with a structure-based docking approach, including predicting binding affinity (using the HYdrogen Bond and DEhydration Energies (HYDE) function) ( ) in SeeSAR 12.1 (BioSolveIT Gmbh, Sankt Augustin, Germany) and the homology model ( swissmodel.expasy.org ) of ACSS2 based on the crystal structure of ACSS2 from Salmonella enterica (PDB: 5JRH) which was prepared using Flare, version 5 (Cresset ® , Litlington, Cambridgeshire, United Kingdom, http://www.cresset-group.com/flare/ ) to select the top 30 molecules for experimental evaluation.

Article Title: Discovery of an Aldo-Keto reductase 1C3 (AKR1C3) degrader
Article Snippet: Docking experiments were performed with SeeSAR 12.1 software (BioSolveIT, Sankt Augustin, Germany).

Article Title: Diverse antifungal potency of terbinafine as a therapeutic agent against Exophiala dermatitidis in vitro
Article Snippet: A nicotinamide adenine dinucleotide (NAD) was docked to the SQLE ED in the same manner as the crystal structure of SQLE Hum using SeeSAR v13.1 software (BioSolveIT GmbH, Sankt Augustin, Germany) ( https://www.biosolveit.de/products/seesar/) .

Article Title: DNA-encoded Library Screening Uncovers Potent DNMT2 Inhibitors Targeting a Cryptic Allosteric Binding Site
Article Snippet: BiosolveIT SeeSAR (v13.0.1) was used to visualize the estimated binding affinity contributions of the co-crystallized DNMT2 ligand.

Binding Assay:

Article Title: Coumarin-based Aldo-Keto Reductase Family 1C (AKR1C) 2 and 3 Inhibitors.
Article Snippet: This manuscript has been accepted after peer review and appears as an Accepted Article online prior to editing, proofing, and formal publication of the final Version of Record (VoR).. The VoR will be published online in Early View as soon as possible and may be different to this Accepted Article as a result of editing.. Readers should obtain the VoR from the journal website shown below when it is published to ensure accuracy of information.

Article Title: Mapping protein-metabolite interactions in E . coli by integrating chromatographic techniques and co-fractionation mass spectrometry
Article Snippet: SeeSAR software v13.0.1 , BioSolveIT , https://www.biosolveit.de/products/seesar/.

Article Title: Discovery of an Aldo-Keto reductase 1C3 (AKR1C3) degrader
Article Snippet: The PROTAC was prepared and docked using SeeSAR 12.1 software (BioSolveIT).

Article Title: Selective and brain-penetrant ACSS2 inhibitors target breast cancer brain metastatic cells
Article Snippet: To facilitate and improve confidence for hit selection, we continued with a structure-based docking approach, including predicting binding affinity (using the HYdrogen Bond and DEhydration Energies (HYDE) function) ( ) in SeeSAR 12.1 (BioSolveIT Gmbh, Sankt Augustin, Germany) and the homology model ( swissmodel.expasy.org ) of ACSS2 based on the crystal structure of ACSS2 from Salmonella enterica (PDB: 5JRH) which was prepared using Flare, version 5 (Cresset ® , Litlington, Cambridgeshire, United Kingdom, http://www.cresset-group.com/flare/ ) to select the top 30 molecules for experimental evaluation.

Article Title: Discovery of an Aldo-Keto reductase 1C3 (AKR1C3) degrader
Article Snippet: Docking experiments were performed with SeeSAR 12.1 software (BioSolveIT, Sankt Augustin, Germany).

Article Title: Diverse antifungal potency of terbinafine as a therapeutic agent against Exophiala dermatitidis in vitro
Article Snippet: A nicotinamide adenine dinucleotide (NAD) was docked to the SQLE ED in the same manner as the crystal structure of SQLE Hum using SeeSAR v13.1 software (BioSolveIT GmbH, Sankt Augustin, Germany) ( https://www.biosolveit.de/products/seesar/) .

Article Title: DNA-encoded Library Screening Uncovers Potent DNMT2 Inhibitors Targeting a Cryptic Allosteric Binding Site
Article Snippet: BiosolveIT SeeSAR (v13.0.1) was used to visualize the estimated binding affinity contributions of the co-crystallized DNMT2 ligand.

Selection:

Article Title: Coumarin-based Aldo-Keto Reductase Family 1C (AKR1C) 2 and 3 Inhibitors.
Article Snippet: This manuscript has been accepted after peer review and appears as an Accepted Article online prior to editing, proofing, and formal publication of the final Version of Record (VoR).. The VoR will be published online in Early View as soon as possible and may be different to this Accepted Article as a result of editing.. Readers should obtain the VoR from the journal website shown below when it is published to ensure accuracy of information.

Article Title: Mapping protein-metabolite interactions in E . coli by integrating chromatographic techniques and co-fractionation mass spectrometry
Article Snippet: SeeSAR software v13.0.1 , BioSolveIT , https://www.biosolveit.de/products/seesar/.

Article Title: Discovery of an Aldo-Keto reductase 1C3 (AKR1C3) degrader
Article Snippet: The PROTAC was prepared and docked using SeeSAR 12.1 software (BioSolveIT).

Article Title: Selective and brain-penetrant ACSS2 inhibitors target breast cancer brain metastatic cells
Article Snippet: To facilitate and improve confidence for hit selection, we continued with a structure-based docking approach, including predicting binding affinity (using the HYdrogen Bond and DEhydration Energies (HYDE) function) ( ) in SeeSAR 12.1 (BioSolveIT Gmbh, Sankt Augustin, Germany) and the homology model ( swissmodel.expasy.org ) of ACSS2 based on the crystal structure of ACSS2 from Salmonella enterica (PDB: 5JRH) which was prepared using Flare, version 5 (Cresset ® , Litlington, Cambridgeshire, United Kingdom, http://www.cresset-group.com/flare/ ) to select the top 30 molecules for experimental evaluation.

Article Title: Discovery of an Aldo-Keto reductase 1C3 (AKR1C3) degrader
Article Snippet: Docking experiments were performed with SeeSAR 12.1 software (BioSolveIT, Sankt Augustin, Germany).

Article Title: Diverse antifungal potency of terbinafine as a therapeutic agent against Exophiala dermatitidis in vitro
Article Snippet: A nicotinamide adenine dinucleotide (NAD) was docked to the SQLE ED in the same manner as the crystal structure of SQLE Hum using SeeSAR v13.1 software (BioSolveIT GmbH, Sankt Augustin, Germany) ( https://www.biosolveit.de/products/seesar/) .

Article Title: DNA-encoded Library Screening Uncovers Potent DNMT2 Inhibitors Targeting a Cryptic Allosteric Binding Site
Article Snippet: BiosolveIT SeeSAR (v13.0.1) was used to visualize the estimated binding affinity contributions of the co-crystallized DNMT2 ligand.



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( A ) Design of resveratrol-type derivatives. ( B ) Synthetic route towards RE-1. (I) 1,3-dichloropropane, NaH, THF, 0 °C-rt, 8 h; (II) pterostilbene, NaH, THF, rt, 16 h, 26%. Docking studies of RES ( C ) and RE-1 ( D ) against VEGF protein. VEGF 1–165 (PDB code: 1FLT) domain was selected as a binding site and docking studies were performed using SEESAR software (13.0 version). RES: resveratrol.

Journal: Molecules

Article Title: Design, Synthesis, and Biological Evaluations of a Novel Resveratrol-Type Analogue Against VEGF

doi: 10.3390/molecules30112345

Figure Lengend Snippet: ( A ) Design of resveratrol-type derivatives. ( B ) Synthetic route towards RE-1. (I) 1,3-dichloropropane, NaH, THF, 0 °C-rt, 8 h; (II) pterostilbene, NaH, THF, rt, 16 h, 26%. Docking studies of RES ( C ) and RE-1 ( D ) against VEGF protein. VEGF 1–165 (PDB code: 1FLT) domain was selected as a binding site and docking studies were performed using SEESAR software (13.0 version). RES: resveratrol.

Article Snippet: Furthermore, we employed SEESAR Optibrium software (version 14.0) to generate a group of predictive ADMET statistics of RE-1 and resveratrol.

Techniques: Binding Assay, Software

( A ) Design of resveratrol-type derivatives. ( B ) Synthetic route towards RE-1. (I) 1,3-dichloropropane, NaH, THF, 0 °C-rt, 8 h; (II) pterostilbene, NaH, THF, rt, 16 h, 26%. Docking studies of RES ( C ) and RE-1 ( D ) against VEGF protein. VEGF 1–165 (PDB code: 1FLT) domain was selected as a binding site and docking studies were performed using SEESAR software (13.0 version). RES: resveratrol.

Journal: Molecules

Article Title: Design, Synthesis, and Biological Evaluations of a Novel Resveratrol-Type Analogue Against VEGF

doi: 10.3390/molecules30112345

Figure Lengend Snippet: ( A ) Design of resveratrol-type derivatives. ( B ) Synthetic route towards RE-1. (I) 1,3-dichloropropane, NaH, THF, 0 °C-rt, 8 h; (II) pterostilbene, NaH, THF, rt, 16 h, 26%. Docking studies of RES ( C ) and RE-1 ( D ) against VEGF protein. VEGF 1–165 (PDB code: 1FLT) domain was selected as a binding site and docking studies were performed using SEESAR software (13.0 version). RES: resveratrol.

Article Snippet: Prediction of ADMET properties, including TPSA, Log P , intestinal absorption and so on, was conducted under Optibrium mode of SEESAR software (Version 13.0; https://www.biosolveit.de/ , accessed on 11 April 2024). a,b following Lipinski’s Rule of Five.

Techniques: Binding Assay, Software