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Matrix Science database search engine
Database Search Engine, supplied by Matrix Science, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/search+engine+database/database+mascot/us12437835-1107-18-16
Average 86 stars, based on 1 article reviews

database search engine - by Bioz Stars, 2026-11

86/100 stars

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Article Title: A P-type pentatricopeptide repeat-containing protein interacts with the Japanese soil-borne wheat mosaic virus movement protein and modulates susceptibility to infection.
Article Snippet: Using AnchorChip Targets (Bruker Daltonics GmbH, Bremen, Germany), the sample and matrix preparation were accomplished according to the manufacturer’s instructions.

Derivative Assay:

Article Title: A phage-derived reconfigurable effector associated with an actinobacterial contractile nanomachine tailors bacterial responses to competition
Article Snippet: .. The obtained mass spectra derived from these peptides were analysed by a MASCOT database search (Matrix Science Ltd., London, UK). ..

Biomarker Discovery:

Article Title: Therapeutic Poxviruses Induce the Secretion of Immunostimulating and Anti-Tumoral Extracellular Vesicles.
Article Snippet: .. C-MS/MS data interpretation and validation : Raw files were onverted to .mgf peaklists using Data Analysis (version 5.3, ruker Daltonics) and were submitted to Mascot database earches (version 2.6.2, MatrixScience, London, UK) against a ultispecies protein database (total of 108,981 entries) including omo sapiens and MVA virus sequences as target sequences, lus Bos Taurus and Gallus gallus as contaminant sequences, ll extracted from UniProtKB-SwissProt and UniProtKB-TrEmbl. enjamini Hochberg strategy was used to validate true identifiations (Couté et al. 2020 ). ..

Virus:

Produced:

Article Title: Compositions and uses thereof
Article Snippet: .. Data produced was searched using Mascot data base search engine (Matrix Science UK). .. Data was validated using Scaffold (Proteome Software, Portland, Oreg.).

Modification:

Article Title: StayRose: A photostable StayGold derivative redshifted by genetic code expansion
Article Snippet: .. Peptide datasets were searched against protein-specific databases using Mascot Database Search by Matrix Science, with up to two missed cleavages, ±20 ppm and ±0.6 Da peptide tolerance, fixed modification of cysteine carbamidomethylation, and variable modification of methionine oxidation, as well as UAA modification where applicable. .. Following μ-precolumn equilibration with 2% aqueous acetonitrile containing 0.1% formic acid, samples were loaded and peptides were eluted at 350 nl min -1 onto the analytical column by increasing the concentration of mobile phase B from 3% B to 15% across a 31 min time frame, then to 35% B across 10 min, and to 85% B across 3 min, followed by a 0% B re-equilibration for 10 min. A hybrid timsTOF Pro (Bruker Daltonics) online was paired with NanoElute through a CaptiveSpray nano-electrospray ion source ( ).

Sequencing:

Article Title: The molecular basis of intrinsic resistance to azoles in Rhizopus arrhizus
Article Snippet: Recombinant enzymes RaCYP51-F1, RaCYP51-F5, and RaCPR were extracted from crude membranes using 17 mM n-decyl-β-D-maltoside (DM, 10 × critical micelle concentration [cmc]) (Anatrace, OH, USA) and ultracentrifugation, then purified by nickel-nitrilotriacetic acid (Ni-NTA) affinity and size-exclusion chromatography (SEC), essentially as described by Monk et al. ( ). .. Protein fragments were identified using the Mascot protein database (Matrix Science) and used to generate primary sequence coverage data ( ). .. Protein fragments were identified using the Mascot protein database (Matrix Science) and used to generate primary sequence coverage data ( ).

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