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sci-atac-seq  (Epigenomics ag)

 
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    Epigenomics ag sci-atac-seq
    Characteristics of sample-multiplexing approaches used for single-cell sequencing
    Sci Atac Seq, supplied by Epigenomics ag, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/sci+atac+seq/scatac+seq/pmc11073057-20-0-4
    Average 90 stars, based on 1 article reviews
    sci-atac-seq - by Bioz Stars, 2026-10
    90/100 stars

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    1) Product Images from "Sample-multiplexing approaches for single-cell sequencing"

    Article Title: Sample-multiplexing approaches for single-cell sequencing

    Journal: Cellular and Molecular Life Sciences: CMLS

    doi: 10.1007/s00018-022-04482-0

    Characteristics of sample-multiplexing approaches used for single-cell sequencing
    Figure Legend Snippet: Characteristics of sample-multiplexing approaches used for single-cell sequencing

    Techniques Used: Membrane, Transfection, Transgenic Assay, shRNA, Polymerase Chain Reaction, DNA Methylation Assay, CRISPR

    Related Articles

    Polymerase Chain Reaction:

    Article Title: ESICCC as a systematic computational framework for evaluation, selection, and integration of cell-cell communication inference methods.
    Article Snippet: Epigenomics at single-cell resolution, such as scATAC-seq (Satpathy et al. 2019; Mimitou et al. 2021), should be useful formodelingmultilayer signaling networks by inferring the intracellular gene regulatory networks (GRNs) that are regulated by upstream LR signals.

    Article Title: How a cell decides its own fate: a single-cell view of molecular mechanisms and dynamics of cell-type specification
    Article Snippet: Epigenomics : To gain insights into chromatin accessibility, one of the most prominent techniques is scATAC-seq [ , ], which uses transposons to barcode accessible DNA. scATAC-seq can be performed simultaneously with scRNA-seq, which was implemented, for example, by sci-CAR [ ] and Paired-seq [ ].

    Article Title: Advanced Omics Techniques for Understanding Cochlear Genome, Epigenome, and Transcriptome in Health and Disease
    Article Snippet: Single-cell epigenomics , scATAC-seq , Regulation of chromatin accessibility during the process of regeneration and identification of genetically conserved regenerative response elements necessary for injury/regenerative responses , Zebrafish (transgenic model for HC ablation) , [ ] .

    Article Title: Bridging epigenomics and tumor immunometabolism: molecular mechanisms and therapeutic implications.
    Article Snippet: Keywords Tumor, Epigenomics, Metabolic reprogramming, Immunometabolism, ScATAC-seq, Spatial metabolomics, Cancer treatment †Xiaowen Xie and Weici Liu contributed equally to this work and share first authorship.

    Article Title: Advances in bulk and single-cell multi-omics approaches for systems biology and precision medicine.
    Article Snippet: Multi-omics allows the systematic understanding of the information flow across different omics layers, while single omics can mainly reflect one aspect of the biological system.. The advancement of bulk and single-cell sequencing technologies and related computational methods for multi-omics largely facilitated the development of system biology and precision medicine.. Single-cell approaches have the advantage of dissecting cellular dynamics and heterogeneity, whereas traditional bulk technologies are limited to individual/population-level investigation.

    Article Title: ESICCC as a systematic computational framework for evaluation, selection, and integration of cell-cell communication inference methods
    Article Snippet: Epigenomics at single-cell resolution, such as scATAC-seq ( ; ), should be useful for modeling multilayer signaling networks by inferring the intracellular gene regulatory networks (GRNs) that are regulated by upstream LR signals.

    Article Title: Unveiling the novel immune and molecular signatures of ovarian cancer: insights and innovations from single-cell sequencing
    Article Snippet: Epigenomics , scATAC-seq , 2015 , Tn5 tagmentation , Unique Molecular Identifier or ATAC-barcode , Genome amplification/tagmentation , High.

    Article Title: Sample-multiplexing approaches for single-cell sequencing
    Article Snippet: sci-ATAC-seq , 20150522 , Epigenomics , Chromatin accessibility , □ , Combinatorial barcodes are introduced into DNA fragments by Tn5 and PCR , NA , >15000 , > 400 sites , Nuclei , GM12878, HL60, HEK293T , Single-cell combinatorial indexing (x-well plate) , [ 62 ].

    Membrane:

    Article Title: ESICCC as a systematic computational framework for evaluation, selection, and integration of cell-cell communication inference methods.
    Article Snippet: Epigenomics at single-cell resolution, such as scATAC-seq (Satpathy et al. 2019; Mimitou et al. 2021), should be useful formodelingmultilayer signaling networks by inferring the intracellular gene regulatory networks (GRNs) that are regulated by upstream LR signals.

    Article Title: How a cell decides its own fate: a single-cell view of molecular mechanisms and dynamics of cell-type specification
    Article Snippet: Epigenomics : To gain insights into chromatin accessibility, one of the most prominent techniques is scATAC-seq [ , ], which uses transposons to barcode accessible DNA. scATAC-seq can be performed simultaneously with scRNA-seq, which was implemented, for example, by sci-CAR [ ] and Paired-seq [ ].

    Article Title: Advanced Omics Techniques for Understanding Cochlear Genome, Epigenome, and Transcriptome in Health and Disease
    Article Snippet: Single-cell epigenomics , scATAC-seq , Regulation of chromatin accessibility during the process of regeneration and identification of genetically conserved regenerative response elements necessary for injury/regenerative responses , Zebrafish (transgenic model for HC ablation) , [ ] .

    Article Title: Bridging epigenomics and tumor immunometabolism: molecular mechanisms and therapeutic implications.
    Article Snippet: Keywords Tumor, Epigenomics, Metabolic reprogramming, Immunometabolism, ScATAC-seq, Spatial metabolomics, Cancer treatment †Xiaowen Xie and Weici Liu contributed equally to this work and share first authorship.

    Article Title: Advances in bulk and single-cell multi-omics approaches for systems biology and precision medicine.
    Article Snippet: Multi-omics allows the systematic understanding of the information flow across different omics layers, while single omics can mainly reflect one aspect of the biological system.. The advancement of bulk and single-cell sequencing technologies and related computational methods for multi-omics largely facilitated the development of system biology and precision medicine.. Single-cell approaches have the advantage of dissecting cellular dynamics and heterogeneity, whereas traditional bulk technologies are limited to individual/population-level investigation.

    Article Title: ESICCC as a systematic computational framework for evaluation, selection, and integration of cell-cell communication inference methods
    Article Snippet: Epigenomics at single-cell resolution, such as scATAC-seq ( ; ), should be useful for modeling multilayer signaling networks by inferring the intracellular gene regulatory networks (GRNs) that are regulated by upstream LR signals.

    Article Title: Unveiling the novel immune and molecular signatures of ovarian cancer: insights and innovations from single-cell sequencing
    Article Snippet: Epigenomics , scATAC-seq , 2015 , Tn5 tagmentation , Unique Molecular Identifier or ATAC-barcode , Genome amplification/tagmentation , High.

    Article Title: Sample-multiplexing approaches for single-cell sequencing
    Article Snippet: sci-ATAC-seq , 20150522 , Epigenomics , Chromatin accessibility , □ , Combinatorial barcodes are introduced into DNA fragments by Tn5 and PCR , NA , >15000 , > 400 sites , Nuclei , GM12878, HL60, HEK293T , Single-cell combinatorial indexing (x-well plate) , [ 62 ].

    Transfection:

    Article Title: ESICCC as a systematic computational framework for evaluation, selection, and integration of cell-cell communication inference methods.
    Article Snippet: Epigenomics at single-cell resolution, such as scATAC-seq (Satpathy et al. 2019; Mimitou et al. 2021), should be useful formodelingmultilayer signaling networks by inferring the intracellular gene regulatory networks (GRNs) that are regulated by upstream LR signals.

    Article Title: How a cell decides its own fate: a single-cell view of molecular mechanisms and dynamics of cell-type specification
    Article Snippet: Epigenomics : To gain insights into chromatin accessibility, one of the most prominent techniques is scATAC-seq [ , ], which uses transposons to barcode accessible DNA. scATAC-seq can be performed simultaneously with scRNA-seq, which was implemented, for example, by sci-CAR [ ] and Paired-seq [ ].

    Article Title: Advanced Omics Techniques for Understanding Cochlear Genome, Epigenome, and Transcriptome in Health and Disease
    Article Snippet: Single-cell epigenomics , scATAC-seq , Regulation of chromatin accessibility during the process of regeneration and identification of genetically conserved regenerative response elements necessary for injury/regenerative responses , Zebrafish (transgenic model for HC ablation) , [ ] .

    Article Title: Bridging epigenomics and tumor immunometabolism: molecular mechanisms and therapeutic implications.
    Article Snippet: Keywords Tumor, Epigenomics, Metabolic reprogramming, Immunometabolism, ScATAC-seq, Spatial metabolomics, Cancer treatment †Xiaowen Xie and Weici Liu contributed equally to this work and share first authorship.

    Article Title: Advances in bulk and single-cell multi-omics approaches for systems biology and precision medicine.
    Article Snippet: Multi-omics allows the systematic understanding of the information flow across different omics layers, while single omics can mainly reflect one aspect of the biological system.. The advancement of bulk and single-cell sequencing technologies and related computational methods for multi-omics largely facilitated the development of system biology and precision medicine.. Single-cell approaches have the advantage of dissecting cellular dynamics and heterogeneity, whereas traditional bulk technologies are limited to individual/population-level investigation.

    Article Title: ESICCC as a systematic computational framework for evaluation, selection, and integration of cell-cell communication inference methods
    Article Snippet: Epigenomics at single-cell resolution, such as scATAC-seq ( ; ), should be useful for modeling multilayer signaling networks by inferring the intracellular gene regulatory networks (GRNs) that are regulated by upstream LR signals.

    Article Title: Unveiling the novel immune and molecular signatures of ovarian cancer: insights and innovations from single-cell sequencing
    Article Snippet: Epigenomics , scATAC-seq , 2015 , Tn5 tagmentation , Unique Molecular Identifier or ATAC-barcode , Genome amplification/tagmentation , High.

    Article Title: Sample-multiplexing approaches for single-cell sequencing
    Article Snippet: sci-ATAC-seq , 20150522 , Epigenomics , Chromatin accessibility , □ , Combinatorial barcodes are introduced into DNA fragments by Tn5 and PCR , NA , >15000 , > 400 sites , Nuclei , GM12878, HL60, HEK293T , Single-cell combinatorial indexing (x-well plate) , [ 62 ].

    Transgenic Assay:

    Article Title: ESICCC as a systematic computational framework for evaluation, selection, and integration of cell-cell communication inference methods.
    Article Snippet: Epigenomics at single-cell resolution, such as scATAC-seq (Satpathy et al. 2019; Mimitou et al. 2021), should be useful formodelingmultilayer signaling networks by inferring the intracellular gene regulatory networks (GRNs) that are regulated by upstream LR signals.

    Article Title: How a cell decides its own fate: a single-cell view of molecular mechanisms and dynamics of cell-type specification
    Article Snippet: Epigenomics : To gain insights into chromatin accessibility, one of the most prominent techniques is scATAC-seq [ , ], which uses transposons to barcode accessible DNA. scATAC-seq can be performed simultaneously with scRNA-seq, which was implemented, for example, by sci-CAR [ ] and Paired-seq [ ].

    Article Title: Advanced Omics Techniques for Understanding Cochlear Genome, Epigenome, and Transcriptome in Health and Disease
    Article Snippet: Single-cell epigenomics , scATAC-seq , Regulation of chromatin accessibility during the process of regeneration and identification of genetically conserved regenerative response elements necessary for injury/regenerative responses , Zebrafish (transgenic model for HC ablation) , [ ] .

    Article Title: Bridging epigenomics and tumor immunometabolism: molecular mechanisms and therapeutic implications.
    Article Snippet: Keywords Tumor, Epigenomics, Metabolic reprogramming, Immunometabolism, ScATAC-seq, Spatial metabolomics, Cancer treatment †Xiaowen Xie and Weici Liu contributed equally to this work and share first authorship.

    Article Title: Advances in bulk and single-cell multi-omics approaches for systems biology and precision medicine.
    Article Snippet: Multi-omics allows the systematic understanding of the information flow across different omics layers, while single omics can mainly reflect one aspect of the biological system.. The advancement of bulk and single-cell sequencing technologies and related computational methods for multi-omics largely facilitated the development of system biology and precision medicine.. Single-cell approaches have the advantage of dissecting cellular dynamics and heterogeneity, whereas traditional bulk technologies are limited to individual/population-level investigation.

    Article Title: ESICCC as a systematic computational framework for evaluation, selection, and integration of cell-cell communication inference methods
    Article Snippet: Epigenomics at single-cell resolution, such as scATAC-seq ( ; ), should be useful for modeling multilayer signaling networks by inferring the intracellular gene regulatory networks (GRNs) that are regulated by upstream LR signals.

    Article Title: Unveiling the novel immune and molecular signatures of ovarian cancer: insights and innovations from single-cell sequencing
    Article Snippet: Epigenomics , scATAC-seq , 2015 , Tn5 tagmentation , Unique Molecular Identifier or ATAC-barcode , Genome amplification/tagmentation , High.

    Article Title: Sample-multiplexing approaches for single-cell sequencing
    Article Snippet: sci-ATAC-seq , 20150522 , Epigenomics , Chromatin accessibility , □ , Combinatorial barcodes are introduced into DNA fragments by Tn5 and PCR , NA , >15000 , > 400 sites , Nuclei , GM12878, HL60, HEK293T , Single-cell combinatorial indexing (x-well plate) , [ 62 ].

    shRNA:

    Article Title: ESICCC as a systematic computational framework for evaluation, selection, and integration of cell-cell communication inference methods.
    Article Snippet: Epigenomics at single-cell resolution, such as scATAC-seq (Satpathy et al. 2019; Mimitou et al. 2021), should be useful formodelingmultilayer signaling networks by inferring the intracellular gene regulatory networks (GRNs) that are regulated by upstream LR signals.

    Article Title: How a cell decides its own fate: a single-cell view of molecular mechanisms and dynamics of cell-type specification
    Article Snippet: Epigenomics : To gain insights into chromatin accessibility, one of the most prominent techniques is scATAC-seq [ , ], which uses transposons to barcode accessible DNA. scATAC-seq can be performed simultaneously with scRNA-seq, which was implemented, for example, by sci-CAR [ ] and Paired-seq [ ].

    Article Title: Advanced Omics Techniques for Understanding Cochlear Genome, Epigenome, and Transcriptome in Health and Disease
    Article Snippet: Single-cell epigenomics , scATAC-seq , Regulation of chromatin accessibility during the process of regeneration and identification of genetically conserved regenerative response elements necessary for injury/regenerative responses , Zebrafish (transgenic model for HC ablation) , [ ] .

    Article Title: Bridging epigenomics and tumor immunometabolism: molecular mechanisms and therapeutic implications.
    Article Snippet: Keywords Tumor, Epigenomics, Metabolic reprogramming, Immunometabolism, ScATAC-seq, Spatial metabolomics, Cancer treatment †Xiaowen Xie and Weici Liu contributed equally to this work and share first authorship.

    Article Title: Advances in bulk and single-cell multi-omics approaches for systems biology and precision medicine.
    Article Snippet: Multi-omics allows the systematic understanding of the information flow across different omics layers, while single omics can mainly reflect one aspect of the biological system.. The advancement of bulk and single-cell sequencing technologies and related computational methods for multi-omics largely facilitated the development of system biology and precision medicine.. Single-cell approaches have the advantage of dissecting cellular dynamics and heterogeneity, whereas traditional bulk technologies are limited to individual/population-level investigation.

    Article Title: ESICCC as a systematic computational framework for evaluation, selection, and integration of cell-cell communication inference methods
    Article Snippet: Epigenomics at single-cell resolution, such as scATAC-seq ( ; ), should be useful for modeling multilayer signaling networks by inferring the intracellular gene regulatory networks (GRNs) that are regulated by upstream LR signals.

    Article Title: Unveiling the novel immune and molecular signatures of ovarian cancer: insights and innovations from single-cell sequencing
    Article Snippet: Epigenomics , scATAC-seq , 2015 , Tn5 tagmentation , Unique Molecular Identifier or ATAC-barcode , Genome amplification/tagmentation , High.

    Article Title: Sample-multiplexing approaches for single-cell sequencing
    Article Snippet: sci-ATAC-seq , 20150522 , Epigenomics , Chromatin accessibility , □ , Combinatorial barcodes are introduced into DNA fragments by Tn5 and PCR , NA , >15000 , > 400 sites , Nuclei , GM12878, HL60, HEK293T , Single-cell combinatorial indexing (x-well plate) , [ 62 ].

    DNA Methylation Assay:

    Article Title: ESICCC as a systematic computational framework for evaluation, selection, and integration of cell-cell communication inference methods.
    Article Snippet: Epigenomics at single-cell resolution, such as scATAC-seq (Satpathy et al. 2019; Mimitou et al. 2021), should be useful formodelingmultilayer signaling networks by inferring the intracellular gene regulatory networks (GRNs) that are regulated by upstream LR signals.

    Article Title: How a cell decides its own fate: a single-cell view of molecular mechanisms and dynamics of cell-type specification
    Article Snippet: Epigenomics : To gain insights into chromatin accessibility, one of the most prominent techniques is scATAC-seq [ , ], which uses transposons to barcode accessible DNA. scATAC-seq can be performed simultaneously with scRNA-seq, which was implemented, for example, by sci-CAR [ ] and Paired-seq [ ].

    Article Title: Advanced Omics Techniques for Understanding Cochlear Genome, Epigenome, and Transcriptome in Health and Disease
    Article Snippet: Single-cell epigenomics , scATAC-seq , Regulation of chromatin accessibility during the process of regeneration and identification of genetically conserved regenerative response elements necessary for injury/regenerative responses , Zebrafish (transgenic model for HC ablation) , [ ] .

    Article Title: Bridging epigenomics and tumor immunometabolism: molecular mechanisms and therapeutic implications.
    Article Snippet: Keywords Tumor, Epigenomics, Metabolic reprogramming, Immunometabolism, ScATAC-seq, Spatial metabolomics, Cancer treatment †Xiaowen Xie and Weici Liu contributed equally to this work and share first authorship.

    Article Title: Advances in bulk and single-cell multi-omics approaches for systems biology and precision medicine.
    Article Snippet: Multi-omics allows the systematic understanding of the information flow across different omics layers, while single omics can mainly reflect one aspect of the biological system.. The advancement of bulk and single-cell sequencing technologies and related computational methods for multi-omics largely facilitated the development of system biology and precision medicine.. Single-cell approaches have the advantage of dissecting cellular dynamics and heterogeneity, whereas traditional bulk technologies are limited to individual/population-level investigation.

    Article Title: ESICCC as a systematic computational framework for evaluation, selection, and integration of cell-cell communication inference methods
    Article Snippet: Epigenomics at single-cell resolution, such as scATAC-seq ( ; ), should be useful for modeling multilayer signaling networks by inferring the intracellular gene regulatory networks (GRNs) that are regulated by upstream LR signals.

    Article Title: Unveiling the novel immune and molecular signatures of ovarian cancer: insights and innovations from single-cell sequencing
    Article Snippet: Epigenomics , scATAC-seq , 2015 , Tn5 tagmentation , Unique Molecular Identifier or ATAC-barcode , Genome amplification/tagmentation , High.

    Article Title: Sample-multiplexing approaches for single-cell sequencing
    Article Snippet: sci-ATAC-seq , 20150522 , Epigenomics , Chromatin accessibility , □ , Combinatorial barcodes are introduced into DNA fragments by Tn5 and PCR , NA , >15000 , > 400 sites , Nuclei , GM12878, HL60, HEK293T , Single-cell combinatorial indexing (x-well plate) , [ 62 ].

    CRISPR:

    Article Title: ESICCC as a systematic computational framework for evaluation, selection, and integration of cell-cell communication inference methods.
    Article Snippet: Epigenomics at single-cell resolution, such as scATAC-seq (Satpathy et al. 2019; Mimitou et al. 2021), should be useful formodelingmultilayer signaling networks by inferring the intracellular gene regulatory networks (GRNs) that are regulated by upstream LR signals.

    Article Title: How a cell decides its own fate: a single-cell view of molecular mechanisms and dynamics of cell-type specification
    Article Snippet: Epigenomics : To gain insights into chromatin accessibility, one of the most prominent techniques is scATAC-seq [ , ], which uses transposons to barcode accessible DNA. scATAC-seq can be performed simultaneously with scRNA-seq, which was implemented, for example, by sci-CAR [ ] and Paired-seq [ ].

    Article Title: Advanced Omics Techniques for Understanding Cochlear Genome, Epigenome, and Transcriptome in Health and Disease
    Article Snippet: Single-cell epigenomics , scATAC-seq , Regulation of chromatin accessibility during the process of regeneration and identification of genetically conserved regenerative response elements necessary for injury/regenerative responses , Zebrafish (transgenic model for HC ablation) , [ ] .

    Article Title: Bridging epigenomics and tumor immunometabolism: molecular mechanisms and therapeutic implications.
    Article Snippet: Keywords Tumor, Epigenomics, Metabolic reprogramming, Immunometabolism, ScATAC-seq, Spatial metabolomics, Cancer treatment †Xiaowen Xie and Weici Liu contributed equally to this work and share first authorship.

    Article Title: Advances in bulk and single-cell multi-omics approaches for systems biology and precision medicine.
    Article Snippet: Multi-omics allows the systematic understanding of the information flow across different omics layers, while single omics can mainly reflect one aspect of the biological system.. The advancement of bulk and single-cell sequencing technologies and related computational methods for multi-omics largely facilitated the development of system biology and precision medicine.. Single-cell approaches have the advantage of dissecting cellular dynamics and heterogeneity, whereas traditional bulk technologies are limited to individual/population-level investigation.

    Article Title: ESICCC as a systematic computational framework for evaluation, selection, and integration of cell-cell communication inference methods
    Article Snippet: Epigenomics at single-cell resolution, such as scATAC-seq ( ; ), should be useful for modeling multilayer signaling networks by inferring the intracellular gene regulatory networks (GRNs) that are regulated by upstream LR signals.

    Article Title: Unveiling the novel immune and molecular signatures of ovarian cancer: insights and innovations from single-cell sequencing
    Article Snippet: Epigenomics , scATAC-seq , 2015 , Tn5 tagmentation , Unique Molecular Identifier or ATAC-barcode , Genome amplification/tagmentation , High.

    Article Title: Sample-multiplexing approaches for single-cell sequencing
    Article Snippet: sci-ATAC-seq , 20150522 , Epigenomics , Chromatin accessibility , □ , Combinatorial barcodes are introduced into DNA fragments by Tn5 and PCR , NA , >15000 , > 400 sites , Nuclei , GM12878, HL60, HEK293T , Single-cell combinatorial indexing (x-well plate) , [ 62 ].



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    Image Search Results


    Characteristics of sample-multiplexing approaches used for single-cell sequencing

    Journal: Cellular and Molecular Life Sciences: CMLS

    Article Title: Sample-multiplexing approaches for single-cell sequencing

    doi: 10.1007/s00018-022-04482-0

    Figure Lengend Snippet: Characteristics of sample-multiplexing approaches used for single-cell sequencing

    Article Snippet: sci-ATAC-seq , 20150522 , Epigenomics , Chromatin accessibility , □ , Combinatorial barcodes are introduced into DNA fragments by Tn5 and PCR , NA , >15000 , > 400 sites , Nuclei , GM12878, HL60, HEK293T , Single-cell combinatorial indexing (x-well plate) , [ 62 ].

    Techniques: Membrane, Transfection, Transgenic Assay, shRNA, Polymerase Chain Reaction, DNA Methylation Assay, CRISPR