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10X Genomics sci-atac-seq
Sci Atac Seq, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/sci+atac+seq/sci+atac+seq/pmc09284282-60-8-19
Average 90 stars, based on 1 article reviews
sci-atac-seq - by Bioz Stars, 2026-11
90/100 stars

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Related Articles

Marker:

Article Title: A combinatorial indexing strategy for low-cost epigenomic profiling of plant single cells
Article Snippet: Analysis of aggregated and single-cell signals indicated that sci-ATAC-seq produced chromatin accessibility profiles equivalent to those generated by the 10X Genomics Chromium system, with similar quality and reproducibility.

Article Title: Assessment of computational methods for the analysis of single-cell ATAC-seq data
Article Snippet: We observed that for 10X Genomics and sci-ATAC-seq the percentage of reads mappable to blacklisted regions is only ~ 1%, while for the Fluidigm C1 based assay used in Buenrostro2018 is much higher, ~ 50%.

Article Title: FIPRESCI: droplet microfluidics based combinatorial indexing for massive-scale 5′-end single-cell RNA sequencing
Article Snippet: It should also be reasonable to expect that the cell type marker identified by sci-RNA-seq or SPLiT-seq is consistent if the same sample is profiled by 10X Genomics.

Article Title: A combinatorial indexing strategy for low-cost epigenomic profiling of plant single cells
Article Snippet: To empirically test this ability, we identified ACRs at the bulk and cell-type scales using sci-ATAC-seq, 10X Genomics scATAC-seq, and their union.

Article Title: FIPRESCI: droplet microfluidics based combinatorial indexing for massive-scale 5′-end single-cell RNA sequencing
Article Snippet: However, if compare the dataset of sci-RNA-seq or SPLiT-seq with 10X Genomics from similar tissue, it is not surprising a lot of differentially-expressed genes will be found.

Produced:

Article Title: A combinatorial indexing strategy for low-cost epigenomic profiling of plant single cells
Article Snippet: Analysis of aggregated and single-cell signals indicated that sci-ATAC-seq produced chromatin accessibility profiles equivalent to those generated by the 10X Genomics Chromium system, with similar quality and reproducibility.

Article Title: Assessment of computational methods for the analysis of single-cell ATAC-seq data
Article Snippet: We observed that for 10X Genomics and sci-ATAC-seq the percentage of reads mappable to blacklisted regions is only ~ 1%, while for the Fluidigm C1 based assay used in Buenrostro2018 is much higher, ~ 50%.

Article Title: FIPRESCI: droplet microfluidics based combinatorial indexing for massive-scale 5′-end single-cell RNA sequencing
Article Snippet: It should also be reasonable to expect that the cell type marker identified by sci-RNA-seq or SPLiT-seq is consistent if the same sample is profiled by 10X Genomics.

Article Title: A combinatorial indexing strategy for low-cost epigenomic profiling of plant single cells
Article Snippet: To empirically test this ability, we identified ACRs at the bulk and cell-type scales using sci-ATAC-seq, 10X Genomics scATAC-seq, and their union.

Article Title: FIPRESCI: droplet microfluidics based combinatorial indexing for massive-scale 5′-end single-cell RNA sequencing
Article Snippet: However, if compare the dataset of sci-RNA-seq or SPLiT-seq with 10X Genomics from similar tissue, it is not surprising a lot of differentially-expressed genes will be found.

Generated:

Article Title: A combinatorial indexing strategy for low-cost epigenomic profiling of plant single cells
Article Snippet: Analysis of aggregated and single-cell signals indicated that sci-ATAC-seq produced chromatin accessibility profiles equivalent to those generated by the 10X Genomics Chromium system, with similar quality and reproducibility.

Article Title: Assessment of computational methods for the analysis of single-cell ATAC-seq data
Article Snippet: We observed that for 10X Genomics and sci-ATAC-seq the percentage of reads mappable to blacklisted regions is only ~ 1%, while for the Fluidigm C1 based assay used in Buenrostro2018 is much higher, ~ 50%.

Article Title: FIPRESCI: droplet microfluidics based combinatorial indexing for massive-scale 5′-end single-cell RNA sequencing
Article Snippet: It should also be reasonable to expect that the cell type marker identified by sci-RNA-seq or SPLiT-seq is consistent if the same sample is profiled by 10X Genomics.

Article Title: A combinatorial indexing strategy for low-cost epigenomic profiling of plant single cells
Article Snippet: To empirically test this ability, we identified ACRs at the bulk and cell-type scales using sci-ATAC-seq, 10X Genomics scATAC-seq, and their union.

Article Title: FIPRESCI: droplet microfluidics based combinatorial indexing for massive-scale 5′-end single-cell RNA sequencing
Article Snippet: However, if compare the dataset of sci-RNA-seq or SPLiT-seq with 10X Genomics from similar tissue, it is not surprising a lot of differentially-expressed genes will be found.

Comparison:

Article Title: A combinatorial indexing strategy for low-cost epigenomic profiling of plant single cells
Article Snippet: Analysis of aggregated and single-cell signals indicated that sci-ATAC-seq produced chromatin accessibility profiles equivalent to those generated by the 10X Genomics Chromium system, with similar quality and reproducibility.

Article Title: Assessment of computational methods for the analysis of single-cell ATAC-seq data
Article Snippet: We observed that for 10X Genomics and sci-ATAC-seq the percentage of reads mappable to blacklisted regions is only ~ 1%, while for the Fluidigm C1 based assay used in Buenrostro2018 is much higher, ~ 50%.

Article Title: FIPRESCI: droplet microfluidics based combinatorial indexing for massive-scale 5′-end single-cell RNA sequencing
Article Snippet: It should also be reasonable to expect that the cell type marker identified by sci-RNA-seq or SPLiT-seq is consistent if the same sample is profiled by 10X Genomics.

Article Title: A combinatorial indexing strategy for low-cost epigenomic profiling of plant single cells
Article Snippet: To empirically test this ability, we identified ACRs at the bulk and cell-type scales using sci-ATAC-seq, 10X Genomics scATAC-seq, and their union.

Article Title: FIPRESCI: droplet microfluidics based combinatorial indexing for massive-scale 5′-end single-cell RNA sequencing
Article Snippet: However, if compare the dataset of sci-RNA-seq or SPLiT-seq with 10X Genomics from similar tissue, it is not surprising a lot of differentially-expressed genes will be found.

Derivative Assay:

Article Title: A combinatorial indexing strategy for low-cost epigenomic profiling of plant single cells
Article Snippet: Analysis of aggregated and single-cell signals indicated that sci-ATAC-seq produced chromatin accessibility profiles equivalent to those generated by the 10X Genomics Chromium system, with similar quality and reproducibility.

Article Title: Assessment of computational methods for the analysis of single-cell ATAC-seq data
Article Snippet: We observed that for 10X Genomics and sci-ATAC-seq the percentage of reads mappable to blacklisted regions is only ~ 1%, while for the Fluidigm C1 based assay used in Buenrostro2018 is much higher, ~ 50%.

Article Title: FIPRESCI: droplet microfluidics based combinatorial indexing for massive-scale 5′-end single-cell RNA sequencing
Article Snippet: It should also be reasonable to expect that the cell type marker identified by sci-RNA-seq or SPLiT-seq is consistent if the same sample is profiled by 10X Genomics.

Article Title: A combinatorial indexing strategy for low-cost epigenomic profiling of plant single cells
Article Snippet: To empirically test this ability, we identified ACRs at the bulk and cell-type scales using sci-ATAC-seq, 10X Genomics scATAC-seq, and their union.

Article Title: FIPRESCI: droplet microfluidics based combinatorial indexing for massive-scale 5′-end single-cell RNA sequencing
Article Snippet: However, if compare the dataset of sci-RNA-seq or SPLiT-seq with 10X Genomics from similar tissue, it is not surprising a lot of differentially-expressed genes will be found.

Gene Expression:

Article Title: A combinatorial indexing strategy for low-cost epigenomic profiling of plant single cells
Article Snippet: Analysis of aggregated and single-cell signals indicated that sci-ATAC-seq produced chromatin accessibility profiles equivalent to those generated by the 10X Genomics Chromium system, with similar quality and reproducibility.

Article Title: Assessment of computational methods for the analysis of single-cell ATAC-seq data
Article Snippet: We observed that for 10X Genomics and sci-ATAC-seq the percentage of reads mappable to blacklisted regions is only ~ 1%, while for the Fluidigm C1 based assay used in Buenrostro2018 is much higher, ~ 50%.

Article Title: FIPRESCI: droplet microfluidics based combinatorial indexing for massive-scale 5′-end single-cell RNA sequencing
Article Snippet: It should also be reasonable to expect that the cell type marker identified by sci-RNA-seq or SPLiT-seq is consistent if the same sample is profiled by 10X Genomics.

Article Title: A combinatorial indexing strategy for low-cost epigenomic profiling of plant single cells
Article Snippet: To empirically test this ability, we identified ACRs at the bulk and cell-type scales using sci-ATAC-seq, 10X Genomics scATAC-seq, and their union.

Article Title: FIPRESCI: droplet microfluidics based combinatorial indexing for massive-scale 5′-end single-cell RNA sequencing
Article Snippet: However, if compare the dataset of sci-RNA-seq or SPLiT-seq with 10X Genomics from similar tissue, it is not surprising a lot of differentially-expressed genes will be found.

RNA Sequencing:

Article Title: A combinatorial indexing strategy for low-cost epigenomic profiling of plant single cells
Article Snippet: Analysis of aggregated and single-cell signals indicated that sci-ATAC-seq produced chromatin accessibility profiles equivalent to those generated by the 10X Genomics Chromium system, with similar quality and reproducibility.

Article Title: Assessment of computational methods for the analysis of single-cell ATAC-seq data
Article Snippet: We observed that for 10X Genomics and sci-ATAC-seq the percentage of reads mappable to blacklisted regions is only ~ 1%, while for the Fluidigm C1 based assay used in Buenrostro2018 is much higher, ~ 50%.

Article Title: FIPRESCI: droplet microfluidics based combinatorial indexing for massive-scale 5′-end single-cell RNA sequencing
Article Snippet: It should also be reasonable to expect that the cell type marker identified by sci-RNA-seq or SPLiT-seq is consistent if the same sample is profiled by 10X Genomics.

Article Title: A combinatorial indexing strategy for low-cost epigenomic profiling of plant single cells
Article Snippet: To empirically test this ability, we identified ACRs at the bulk and cell-type scales using sci-ATAC-seq, 10X Genomics scATAC-seq, and their union.

Article Title: FIPRESCI: droplet microfluidics based combinatorial indexing for massive-scale 5′-end single-cell RNA sequencing
Article Snippet: However, if compare the dataset of sci-RNA-seq or SPLiT-seq with 10X Genomics from similar tissue, it is not surprising a lot of differentially-expressed genes will be found.



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Image Search Results


Characteristics of sample-multiplexing approaches used for single-cell sequencing

Journal: Cellular and Molecular Life Sciences: CMLS

Article Title: Sample-multiplexing approaches for single-cell sequencing

doi: 10.1007/s00018-022-04482-0

Figure Lengend Snippet: Characteristics of sample-multiplexing approaches used for single-cell sequencing

Article Snippet: sci-ATAC-seq , 20150522 , Epigenomics , Chromatin accessibility , □ , Combinatorial barcodes are introduced into DNA fragments by Tn5 and PCR , NA , >15000 , > 400 sites , Nuclei , GM12878, HL60, HEK293T , Single-cell combinatorial indexing (x-well plate) , [ 62 ].

Techniques: Membrane, Transfection, Transgenic Assay, shRNA, Polymerase Chain Reaction, DNA Methylation Assay, CRISPR