samtools (Broad Institute Inc)
90
Structured Review
Broad Institute Inc
samtools
Samtools, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/samtools/samtools/pmc05768874-289-3-6
Average 90 stars, based on 1 article reviews
Samtools, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/samtools/samtools/pmc05768874-289-3-6
Average 90 stars, based on 1 article reviews
samtools - by Bioz Stars,
2026-11
90/100 stars
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other:Article Title: Four new genome sequences of the Pallas’s cat (Otocolobus manul): an insight into the patterns of within-species variability Article Snippet: Resulting alignments were sorted using SAMtools (v1.13) (Danecek et al., 2021) with parameters sort -@ 6 -m 2G and merged for each sample using Picard (v1.111) (Broad Institute, 2019). Article Title: Interferon regulatory factor 4 mediates nonenzymatic IRE1 dependency in multiple myeloma cells. Article Snippet: Aligned reads were then filtered for quality and duplicates using samtools (v1.9) [74] and Picard (Broad Institute - v2.20.7). Article Title: An RNase H-Like gene complements resistance to Bean common mosaic necrosis virus in Phaseolus vulgaris. Article Snippet: BAM files were generated using Samtools v1.15.1 (Li et al., 2009) and sorted with Picard tools v2.21.4 (Broad Institute, 2019; https://broadinstitute.github.io/picard/). Article Title: Chromosome-level genome assembly and methylome profile enables insights for the conservation of endangered loggerhead sea turtles Article Snippet: Alignments were sorted with SAMtools v.1.9 ( Li et al ., 2009 ), and duplicates were tagged with Picard MarkDuplicates v.2.26.9 (Broad Institute, 2022). Polymerase Chain Reaction:Article Title: Transcription factor ATF3 aggravates kidney fibrosis by maintaining the state of histone H3 lysine 27 acetylation Article Snippet: The default parameter of Bowtie 2 (version 2.3.1, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA) was considered to align the ChIPseq reads to the mm10 reference genome, which was retrieved from Ensembl (Release 90). .. Then, multiple aligned reads, PCR duplications, and ENCODE blacklist region were discarded using Generated:Article Title: An RNase H‐Like gene complements resistance to Bean common mosaic necrosis virus in Phaseolus vulgaris Article Snippet: .. BAM files were generated using |