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Structured Review

SourceForge net samtools 1.9 mpileup
Samtools 1.9 Mpileup, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/samtools/samtools+mpileup/pm35972253-20-11-13
Average 90 stars, based on 1 article reviews
samtools 1.9 mpileup - by Bioz Stars, 2026-11
90/100 stars

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Related Articles

other:

Article Title: De Novo Assembly and Characterization of Tall Fescue Transcriptome under Water Stress.
Article Snippet: Brachypodium distachyon Chromosomes High quality filtered reads from both genotypes were aligned to the contigs and further processed for singlenucleotide polymorphism (SNP) calling using SAMtools mpileup v0.1.7a (http://samtools.sourceforge.net/) (Li et al., 2009).

Article Title: Draft Genome Sequence of Streptomyces sp. Strain R1, Isolated from Water Canal Sediments, Possessing Antimicrobial and Plant Growth Promoting Capabilities.
Article Snippet: A pileup file was generated from all of the alignments using SAMtools 1.9 (https://sourceforge.net/projects/samtools/files/samtools/1.9/) mpileup, again under the default settings.

Article Title: Discovery of Genome-Wide DNA Polymorphisms and Resistance-Relative Genes in Chaling Wild Rice (Oryza rufipogon Griff.) by Whole-Genome Sequencing
Article Snippet: Chaling common wild rice (Chaling CWR, Oryza rufipogon Griff.) is a kind of germplasm resource which possesses abundant genetic diversity and plays a pivotal role in improving cultivated rice.. In this research, we used next-generation sequencing technology to reveal the genome sequence of Chaling CWR and investigate its elite genes.. The results showed that the average coverage was 93.99%.

Article Title: Comparative analysis of targeted next-generation sequencing for Plasmodium falciparum drug resistance markers
Article Snippet: Variant calling was performed using the SAMtools (version 0.1.16; https://sourceforge.net/projects/samtools/files/samtools/0.1.16/ ) mpileup command .

Sequencing:

Article Title: Sequence introgression from exogenous lineages underlies genomic and biological differences among Cryptosporidium parvum IOWA lines.
Article Snippet: .. Genome coverage and sequence depth were estimated using the mpileup algorithm of SAMtools v1.7 (http://samtools.sourceforge.net /). ..



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