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recombinant dna pmscv cre puro ires gfp addgene plasmid  (Addgene inc)


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    Structured Review

    Addgene inc recombinant dna pmscv cre puro ires gfp addgene plasmid
    Recombinant Dna Pmscv Cre Puro Ires Gfp Addgene Plasmid, supplied by Addgene inc, used in various techniques. Bioz Stars score: 93/100, based on 8 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/s3+noncontact+microarray+printer/MSCV-PIG-Cre+(Plasmid+%2350935)/pm33186519-454-98-101
    Average 93 stars, based on 8 article reviews
    recombinant dna pmscv cre puro ires gfp addgene plasmid - by Bioz Stars, 2026-10
    93/100 stars

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    Related Articles

    Derivative Assay:

    Article Title: Immunomodulatory and differentiating function selective retinoid and rexinoid compounds in combination with immune modulators for cancer immunotherapy
    Article Snippet: .. To generate Smo-KO and WT stroma, BM stromal cells were derived from Smofl/fl mice and transduced with the retroviral vector PIG-Cre encoding Cre-recombinase (Addgene; catalog 50935) or a control vector (Addgene; catalog 18751), respectively. ..

    Article Title: RAR selective agonists in combination with immune modulators for cancer immunotherapy
    Article Snippet: .. To generate Smo-KO and WT stroma, BM stromal cells were derived from Smofl/fl mice and transduced with the retroviral vector PIG-Cre encoding Cre-recombinase (Addgene; catalog 50935) or a control vector (Addgene; catalog 18751), respectively. ..

    Article Title: Use of CYP26-resistant RAR alpha selective agonists in the treatment of cancer
    Article Snippet: .. To generate Smo-KO and WT stroma, BM stromal cells were derived from Smofl/fl mice and transduced with the retroviral vector PIG-Cre encoding Cre-recombinase (Addgene; catalog 50935) or a control vector (Addgene; catalog 18751), respectively. ..

    Article Title: Use of CYP26-resistant RAR alpha selective agonists in the treatment of cancer
    Article Snippet: .. To generate Smo-KO and WT stroma, BM stromal cells were derived from Smofl/fl mice and transduced with the retroviral vector PIG-Cre encoding Cre-recombinase (Addgene; catalog 50935) or a control vector (Addgene; catalog 18751), respectively. ..

    Article Title: Immunomodulatory and differentiating function selective retinoid and rexinoid compounds in combination with immune modulators for cancer immunotherapy
    Article Snippet: .. To generate Smo-KO and WT stroma, BM stromal cells were derived from Smofl/fl mice and transduced with the retroviral vector PIG-Cre encoding Cre-recombinase (Addgene; catalog 50935) or a control vector (Addgene; catalog 18751), respectively. ..

    Transduction:

    Article Title: Immunomodulatory and differentiating function selective retinoid and rexinoid compounds in combination with immune modulators for cancer immunotherapy
    Article Snippet: .. To generate Smo-KO and WT stroma, BM stromal cells were derived from Smofl/fl mice and transduced with the retroviral vector PIG-Cre encoding Cre-recombinase (Addgene; catalog 50935) or a control vector (Addgene; catalog 18751), respectively. ..

    Article Title: RAR selective agonists in combination with immune modulators for cancer immunotherapy
    Article Snippet: .. To generate Smo-KO and WT stroma, BM stromal cells were derived from Smofl/fl mice and transduced with the retroviral vector PIG-Cre encoding Cre-recombinase (Addgene; catalog 50935) or a control vector (Addgene; catalog 18751), respectively. ..

    Article Title: Use of CYP26-resistant RAR alpha selective agonists in the treatment of cancer
    Article Snippet: .. To generate Smo-KO and WT stroma, BM stromal cells were derived from Smofl/fl mice and transduced with the retroviral vector PIG-Cre encoding Cre-recombinase (Addgene; catalog 50935) or a control vector (Addgene; catalog 18751), respectively. ..

    Article Title: Use of CYP26-resistant RAR alpha selective agonists in the treatment of cancer
    Article Snippet: .. To generate Smo-KO and WT stroma, BM stromal cells were derived from Smofl/fl mice and transduced with the retroviral vector PIG-Cre encoding Cre-recombinase (Addgene; catalog 50935) or a control vector (Addgene; catalog 18751), respectively. ..

    Article Title: Immunomodulatory and differentiating function selective retinoid and rexinoid compounds in combination with immune modulators for cancer immunotherapy
    Article Snippet: .. To generate Smo-KO and WT stroma, BM stromal cells were derived from Smofl/fl mice and transduced with the retroviral vector PIG-Cre encoding Cre-recombinase (Addgene; catalog 50935) or a control vector (Addgene; catalog 18751), respectively. ..

    Retroviral:

    Article Title: Immunomodulatory and differentiating function selective retinoid and rexinoid compounds in combination with immune modulators for cancer immunotherapy
    Article Snippet: .. To generate Smo-KO and WT stroma, BM stromal cells were derived from Smofl/fl mice and transduced with the retroviral vector PIG-Cre encoding Cre-recombinase (Addgene; catalog 50935) or a control vector (Addgene; catalog 18751), respectively. ..

    Article Title: RAR selective agonists in combination with immune modulators for cancer immunotherapy
    Article Snippet: .. To generate Smo-KO and WT stroma, BM stromal cells were derived from Smofl/fl mice and transduced with the retroviral vector PIG-Cre encoding Cre-recombinase (Addgene; catalog 50935) or a control vector (Addgene; catalog 18751), respectively. ..

    Article Title: Use of CYP26-resistant RAR alpha selective agonists in the treatment of cancer
    Article Snippet: .. To generate Smo-KO and WT stroma, BM stromal cells were derived from Smofl/fl mice and transduced with the retroviral vector PIG-Cre encoding Cre-recombinase (Addgene; catalog 50935) or a control vector (Addgene; catalog 18751), respectively. ..

    Article Title: Use of CYP26-resistant RAR alpha selective agonists in the treatment of cancer
    Article Snippet: .. To generate Smo-KO and WT stroma, BM stromal cells were derived from Smofl/fl mice and transduced with the retroviral vector PIG-Cre encoding Cre-recombinase (Addgene; catalog 50935) or a control vector (Addgene; catalog 18751), respectively. ..

    Article Title: Immunomodulatory and differentiating function selective retinoid and rexinoid compounds in combination with immune modulators for cancer immunotherapy
    Article Snippet: .. To generate Smo-KO and WT stroma, BM stromal cells were derived from Smofl/fl mice and transduced with the retroviral vector PIG-Cre encoding Cre-recombinase (Addgene; catalog 50935) or a control vector (Addgene; catalog 18751), respectively. ..

    Plasmid Preparation:

    Article Title: Immunomodulatory and differentiating function selective retinoid and rexinoid compounds in combination with immune modulators for cancer immunotherapy
    Article Snippet: .. To generate Smo-KO and WT stroma, BM stromal cells were derived from Smofl/fl mice and transduced with the retroviral vector PIG-Cre encoding Cre-recombinase (Addgene; catalog 50935) or a control vector (Addgene; catalog 18751), respectively. ..

    Article Title: Senescence Reprogramming by TIMP1 Deficiency Promotes Prostate Cancer Metastasis.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Deposited Data Microarray GEO GSE21032 DNA methylation dataset GEO GSE73549 DNA methylation dataset GEO GSE38240 scRNA-seq This paper ArrayExpress: E-MTAB-9578 RNA-seq This paper ArrayExpress: E-MTAB-9624 Experimental Models: Cell Lines PC3 ATCC Cat# CRL-1435; RRID: CVCL_0035 293T HEK ATCC Cat# CRL-11268; RRID: CVCL_1926 Mouse Embryonic Fibroblasts (MEFs) This paper, see methods N/A Experimental Models: Organisms/Strains Mouse: Ptenpc-/- Chen Z, et al. 2005 N/A Mouse: Ptenpc-/-; Trp53pc-/- Chen Z, et al. 2005 N/A Mouse: TIMP-/- (TIMP1 B6.129S4-Timp1tm1Pds/J) The Jackson Laboratory Cat# 006243 RRID: IMSR_JAX:006243 Mouse: B6.SJL-Ptprca Pepcb/BoyCrl (C57BL6-Ly5.1) Charles River N/A Oligonucleotides See Table S3 Recombinant DNA pMSCV-CRE-PURO-IRES-GFP Addgene plasmid Cat# 50935; RRID: Addgene_50935 pMSCVPURO-IRES-GFP Addgene plasmid Cat# 18751; RRID: Addgene_18751 GIPZ Sh-TIMP1 (107) Horizon Discovery Cat# RHS4430-200284994- V3LHS_317107 GIPZ Sh-TIMP1 (110) Horizon Discovery Cat# RHS4430-200284918- V3LHS_317110 pLX313-Firefly luciferase Addgene plasmid Cat# 118017; RRID: Addgene_118017 GIPZ Empty Vector Horizon Discovery Cat# RHS4351 pSicoR-Ef1a-mCh Addgene plasmid Cat# 31847; RRID: Addgene_31847 Software and Algorithms Image J N/A https://imagej.nih.gov/ij/ RRID: SCR_003070 Aperio ImageScope Leica (V 12.3.2.8013) https://www.leicabiosystems.com/ digital-pathology/manage/aperioimagescope/RRID: SCR_014311 GraphPad Prism GraphPad software (V 8.4.2 (679)) https://www.graphpad.com/scientific- software/prism/RRID: SCR_002798 FlowJo FlowJo LLC https://www.flowjo.com/solutions/ flowjo RRID: SCR_008520 Sequence data, analyses Cell Ranger (3.1.0) 10X Genomics https://support.10xgenomics.com/ single-cell-gene-expression/software/ pipelines/latest/what-is-cell-ranger R v4.0.2 https://www.r-project.org/ NA (Continued on next page) e3 Cancer Cell 39, 1–15.e1–e9, January 11, 2021 .. REAGENT or RESOURCE SOURCE IDENTIFIER Deposited Data Microarray GEO GSE21032 DNA methylation dataset GEO GSE73549 DNA methylation dataset GEO GSE38240 scRNA-seq This paper ArrayExpress: E-MTAB-9578 RNA-seq This paper ArrayExpress: E-MTAB-9624 Experimental Models: Cell Lines PC3 ATCC Cat# CRL-1435; RRID: CVCL_0035 293T HEK ATCC Cat# CRL-11268; RRID: CVCL_1926 Mouse Embryonic Fibroblasts (MEFs) This paper, see methods N/A Experimental Models: Organisms/Strains Mouse: Ptenpc-/- Chen Z, et al. 2005 N/A Mouse: Ptenpc-/-; Trp53pc-/- Chen Z, et al. 2005 N/A Mouse: TIMP-/- (TIMP1 B6.129S4-Timp1tm1Pds/J) The Jackson Laboratory Cat# 006243 RRID: IMSR_JAX:006243 Mouse: B6.SJL-Ptprca Pepcb/BoyCrl (C57BL6-Ly5.1) Charles River N/A Oligonucleotides See Table S3 Recombinant DNA pMSCV-CRE-PURO-IRES-GFP Addgene plasmid Cat# 50935; RRID: Addgene_50935 pMSCVPURO-IRES-GFP Addgene plasmid Cat# 18751; RRID: Addgene_18751 GIPZ Sh-TIMP1 (107) Horizon Discovery Cat# RHS4430-200284994- V3LHS_317107 GIPZ Sh-TIMP1 (110) Horizon Discovery Cat# RHS4430-200284918- V3LHS_317110 pLX313-Firefly luciferase Addgene plasmid Cat# 118017; RRID: Addgene_118017 GIPZ Empty Vector Horizon Discovery Cat# RHS4351 pSicoR-Ef1a-mCh Addgene plasmid Cat# 31847; RRID: Addgene_31847 Software and Algorithms Image J N/A https://imagej.nih.gov/ij/ RRID: SCR_003070 Aperio ImageScope Leica (V 12.3.2.8013) https://www.leicabiosystems.com/ digital-pathology/manage/aperioimagescope/RRID: SCR_014311 GraphPad Prism GraphPad software (V 8.4.2 (679)) https://www.graphpad.com/scientific- software/prism/RRID: SCR_002798 FlowJo FlowJo LLC https://www.flowjo.com/solutions/ flowjo RRID: SCR_008520 Sequence data, analyses Cell Ranger (3.1.0) 10X Genomics https://support.10xgenomics.com/ single-cell-gene-expression/software/ pipelines/latest/what-is-cell-ranger R v4.0.2 https://www.r-project.org/ NA (Continued on next page) e3 Cancer Cell 39, 1–15.e1–e9, January 11, 2021 ..

    Article Title: RAR selective agonists in combination with immune modulators for cancer immunotherapy
    Article Snippet: .. To generate Smo-KO and WT stroma, BM stromal cells were derived from Smofl/fl mice and transduced with the retroviral vector PIG-Cre encoding Cre-recombinase (Addgene; catalog 50935) or a control vector (Addgene; catalog 18751), respectively. ..

    Article Title: Use of CYP26-resistant RAR alpha selective agonists in the treatment of cancer
    Article Snippet: .. To generate Smo-KO and WT stroma, BM stromal cells were derived from Smofl/fl mice and transduced with the retroviral vector PIG-Cre encoding Cre-recombinase (Addgene; catalog 50935) or a control vector (Addgene; catalog 18751), respectively. ..

    Article Title: Use of CYP26-resistant RAR alpha selective agonists in the treatment of cancer
    Article Snippet: .. To generate Smo-KO and WT stroma, BM stromal cells were derived from Smofl/fl mice and transduced with the retroviral vector PIG-Cre encoding Cre-recombinase (Addgene; catalog 50935) or a control vector (Addgene; catalog 18751), respectively. ..

    Article Title: Immunomodulatory and differentiating function selective retinoid and rexinoid compounds in combination with immune modulators for cancer immunotherapy
    Article Snippet: .. To generate Smo-KO and WT stroma, BM stromal cells were derived from Smofl/fl mice and transduced with the retroviral vector PIG-Cre encoding Cre-recombinase (Addgene; catalog 50935) or a control vector (Addgene; catalog 18751), respectively. ..

    Article Title: Lymph node macrophages drive immune tolerance and resistance to cancer therapy by induction of the immune-regulatory cytokine IL-33.
    Article Snippet: In brief Although immunity is an important component of cancer therapy responses, suppressive immune feedback restricting anti-tumor activity has not been extensively examined.. In this issue of Cancer Cell, Lamorte et al. identify expression of the cytokine IL-33 by lymph node macrophages after therapy as an important inhibitor of therapeutic efficacy.. Notably, antagonizing IL-33 function significantly increases therapeutic responses to chemoand targeted-therapy revealing IL-33 responses as an actionable target to augment anti-tumor immunity when chemotherapy or other therapeutic modalities are employed.

    Control:

    Article Title: Immunomodulatory and differentiating function selective retinoid and rexinoid compounds in combination with immune modulators for cancer immunotherapy
    Article Snippet: .. To generate Smo-KO and WT stroma, BM stromal cells were derived from Smofl/fl mice and transduced with the retroviral vector PIG-Cre encoding Cre-recombinase (Addgene; catalog 50935) or a control vector (Addgene; catalog 18751), respectively. ..

    Article Title: RAR selective agonists in combination with immune modulators for cancer immunotherapy
    Article Snippet: .. To generate Smo-KO and WT stroma, BM stromal cells were derived from Smofl/fl mice and transduced with the retroviral vector PIG-Cre encoding Cre-recombinase (Addgene; catalog 50935) or a control vector (Addgene; catalog 18751), respectively. ..

    Article Title: Use of CYP26-resistant RAR alpha selective agonists in the treatment of cancer
    Article Snippet: .. To generate Smo-KO and WT stroma, BM stromal cells were derived from Smofl/fl mice and transduced with the retroviral vector PIG-Cre encoding Cre-recombinase (Addgene; catalog 50935) or a control vector (Addgene; catalog 18751), respectively. ..

    Article Title: Use of CYP26-resistant RAR alpha selective agonists in the treatment of cancer
    Article Snippet: .. To generate Smo-KO and WT stroma, BM stromal cells were derived from Smofl/fl mice and transduced with the retroviral vector PIG-Cre encoding Cre-recombinase (Addgene; catalog 50935) or a control vector (Addgene; catalog 18751), respectively. ..

    Article Title: Immunomodulatory and differentiating function selective retinoid and rexinoid compounds in combination with immune modulators for cancer immunotherapy
    Article Snippet: .. To generate Smo-KO and WT stroma, BM stromal cells were derived from Smofl/fl mice and transduced with the retroviral vector PIG-Cre encoding Cre-recombinase (Addgene; catalog 50935) or a control vector (Addgene; catalog 18751), respectively. ..

    Microarray:

    Article Title: Senescence Reprogramming by TIMP1 Deficiency Promotes Prostate Cancer Metastasis.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Deposited Data Microarray GEO GSE21032 DNA methylation dataset GEO GSE73549 DNA methylation dataset GEO GSE38240 scRNA-seq This paper ArrayExpress: E-MTAB-9578 RNA-seq This paper ArrayExpress: E-MTAB-9624 Experimental Models: Cell Lines PC3 ATCC Cat# CRL-1435; RRID: CVCL_0035 293T HEK ATCC Cat# CRL-11268; RRID: CVCL_1926 Mouse Embryonic Fibroblasts (MEFs) This paper, see methods N/A Experimental Models: Organisms/Strains Mouse: Ptenpc-/- Chen Z, et al. 2005 N/A Mouse: Ptenpc-/-; Trp53pc-/- Chen Z, et al. 2005 N/A Mouse: TIMP-/- (TIMP1 B6.129S4-Timp1tm1Pds/J) The Jackson Laboratory Cat# 006243 RRID: IMSR_JAX:006243 Mouse: B6.SJL-Ptprca Pepcb/BoyCrl (C57BL6-Ly5.1) Charles River N/A Oligonucleotides See Table S3 Recombinant DNA pMSCV-CRE-PURO-IRES-GFP Addgene plasmid Cat# 50935; RRID: Addgene_50935 pMSCVPURO-IRES-GFP Addgene plasmid Cat# 18751; RRID: Addgene_18751 GIPZ Sh-TIMP1 (107) Horizon Discovery Cat# RHS4430-200284994- V3LHS_317107 GIPZ Sh-TIMP1 (110) Horizon Discovery Cat# RHS4430-200284918- V3LHS_317110 pLX313-Firefly luciferase Addgene plasmid Cat# 118017; RRID: Addgene_118017 GIPZ Empty Vector Horizon Discovery Cat# RHS4351 pSicoR-Ef1a-mCh Addgene plasmid Cat# 31847; RRID: Addgene_31847 Software and Algorithms Image J N/A https://imagej.nih.gov/ij/ RRID: SCR_003070 Aperio ImageScope Leica (V 12.3.2.8013) https://www.leicabiosystems.com/ digital-pathology/manage/aperioimagescope/RRID: SCR_014311 GraphPad Prism GraphPad software (V 8.4.2 (679)) https://www.graphpad.com/scientific- software/prism/RRID: SCR_002798 FlowJo FlowJo LLC https://www.flowjo.com/solutions/ flowjo RRID: SCR_008520 Sequence data, analyses Cell Ranger (3.1.0) 10X Genomics https://support.10xgenomics.com/ single-cell-gene-expression/software/ pipelines/latest/what-is-cell-ranger R v4.0.2 https://www.r-project.org/ NA (Continued on next page) e3 Cancer Cell 39, 1–15.e1–e9, January 11, 2021 .. REAGENT or RESOURCE SOURCE IDENTIFIER Deposited Data Microarray GEO GSE21032 DNA methylation dataset GEO GSE73549 DNA methylation dataset GEO GSE38240 scRNA-seq This paper ArrayExpress: E-MTAB-9578 RNA-seq This paper ArrayExpress: E-MTAB-9624 Experimental Models: Cell Lines PC3 ATCC Cat# CRL-1435; RRID: CVCL_0035 293T HEK ATCC Cat# CRL-11268; RRID: CVCL_1926 Mouse Embryonic Fibroblasts (MEFs) This paper, see methods N/A Experimental Models: Organisms/Strains Mouse: Ptenpc-/- Chen Z, et al. 2005 N/A Mouse: Ptenpc-/-; Trp53pc-/- Chen Z, et al. 2005 N/A Mouse: TIMP-/- (TIMP1 B6.129S4-Timp1tm1Pds/J) The Jackson Laboratory Cat# 006243 RRID: IMSR_JAX:006243 Mouse: B6.SJL-Ptprca Pepcb/BoyCrl (C57BL6-Ly5.1) Charles River N/A Oligonucleotides See Table S3 Recombinant DNA pMSCV-CRE-PURO-IRES-GFP Addgene plasmid Cat# 50935; RRID: Addgene_50935 pMSCVPURO-IRES-GFP Addgene plasmid Cat# 18751; RRID: Addgene_18751 GIPZ Sh-TIMP1 (107) Horizon Discovery Cat# RHS4430-200284994- V3LHS_317107 GIPZ Sh-TIMP1 (110) Horizon Discovery Cat# RHS4430-200284918- V3LHS_317110 pLX313-Firefly luciferase Addgene plasmid Cat# 118017; RRID: Addgene_118017 GIPZ Empty Vector Horizon Discovery Cat# RHS4351 pSicoR-Ef1a-mCh Addgene plasmid Cat# 31847; RRID: Addgene_31847 Software and Algorithms Image J N/A https://imagej.nih.gov/ij/ RRID: SCR_003070 Aperio ImageScope Leica (V 12.3.2.8013) https://www.leicabiosystems.com/ digital-pathology/manage/aperioimagescope/RRID: SCR_014311 GraphPad Prism GraphPad software (V 8.4.2 (679)) https://www.graphpad.com/scientific- software/prism/RRID: SCR_002798 FlowJo FlowJo LLC https://www.flowjo.com/solutions/ flowjo RRID: SCR_008520 Sequence data, analyses Cell Ranger (3.1.0) 10X Genomics https://support.10xgenomics.com/ single-cell-gene-expression/software/ pipelines/latest/what-is-cell-ranger R v4.0.2 https://www.r-project.org/ NA (Continued on next page) e3 Cancer Cell 39, 1–15.e1–e9, January 11, 2021 ..

    DNA Methylation Assay:

    Article Title: Senescence Reprogramming by TIMP1 Deficiency Promotes Prostate Cancer Metastasis.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Deposited Data Microarray GEO GSE21032 DNA methylation dataset GEO GSE73549 DNA methylation dataset GEO GSE38240 scRNA-seq This paper ArrayExpress: E-MTAB-9578 RNA-seq This paper ArrayExpress: E-MTAB-9624 Experimental Models: Cell Lines PC3 ATCC Cat# CRL-1435; RRID: CVCL_0035 293T HEK ATCC Cat# CRL-11268; RRID: CVCL_1926 Mouse Embryonic Fibroblasts (MEFs) This paper, see methods N/A Experimental Models: Organisms/Strains Mouse: Ptenpc-/- Chen Z, et al. 2005 N/A Mouse: Ptenpc-/-; Trp53pc-/- Chen Z, et al. 2005 N/A Mouse: TIMP-/- (TIMP1 B6.129S4-Timp1tm1Pds/J) The Jackson Laboratory Cat# 006243 RRID: IMSR_JAX:006243 Mouse: B6.SJL-Ptprca Pepcb/BoyCrl (C57BL6-Ly5.1) Charles River N/A Oligonucleotides See Table S3 Recombinant DNA pMSCV-CRE-PURO-IRES-GFP Addgene plasmid Cat# 50935; RRID: Addgene_50935 pMSCVPURO-IRES-GFP Addgene plasmid Cat# 18751; RRID: Addgene_18751 GIPZ Sh-TIMP1 (107) Horizon Discovery Cat# RHS4430-200284994- V3LHS_317107 GIPZ Sh-TIMP1 (110) Horizon Discovery Cat# RHS4430-200284918- V3LHS_317110 pLX313-Firefly luciferase Addgene plasmid Cat# 118017; RRID: Addgene_118017 GIPZ Empty Vector Horizon Discovery Cat# RHS4351 pSicoR-Ef1a-mCh Addgene plasmid Cat# 31847; RRID: Addgene_31847 Software and Algorithms Image J N/A https://imagej.nih.gov/ij/ RRID: SCR_003070 Aperio ImageScope Leica (V 12.3.2.8013) https://www.leicabiosystems.com/ digital-pathology/manage/aperioimagescope/RRID: SCR_014311 GraphPad Prism GraphPad software (V 8.4.2 (679)) https://www.graphpad.com/scientific- software/prism/RRID: SCR_002798 FlowJo FlowJo LLC https://www.flowjo.com/solutions/ flowjo RRID: SCR_008520 Sequence data, analyses Cell Ranger (3.1.0) 10X Genomics https://support.10xgenomics.com/ single-cell-gene-expression/software/ pipelines/latest/what-is-cell-ranger R v4.0.2 https://www.r-project.org/ NA (Continued on next page) e3 Cancer Cell 39, 1–15.e1–e9, January 11, 2021 .. REAGENT or RESOURCE SOURCE IDENTIFIER Deposited Data Microarray GEO GSE21032 DNA methylation dataset GEO GSE73549 DNA methylation dataset GEO GSE38240 scRNA-seq This paper ArrayExpress: E-MTAB-9578 RNA-seq This paper ArrayExpress: E-MTAB-9624 Experimental Models: Cell Lines PC3 ATCC Cat# CRL-1435; RRID: CVCL_0035 293T HEK ATCC Cat# CRL-11268; RRID: CVCL_1926 Mouse Embryonic Fibroblasts (MEFs) This paper, see methods N/A Experimental Models: Organisms/Strains Mouse: Ptenpc-/- Chen Z, et al. 2005 N/A Mouse: Ptenpc-/-; Trp53pc-/- Chen Z, et al. 2005 N/A Mouse: TIMP-/- (TIMP1 B6.129S4-Timp1tm1Pds/J) The Jackson Laboratory Cat# 006243 RRID: IMSR_JAX:006243 Mouse: B6.SJL-Ptprca Pepcb/BoyCrl (C57BL6-Ly5.1) Charles River N/A Oligonucleotides See Table S3 Recombinant DNA pMSCV-CRE-PURO-IRES-GFP Addgene plasmid Cat# 50935; RRID: Addgene_50935 pMSCVPURO-IRES-GFP Addgene plasmid Cat# 18751; RRID: Addgene_18751 GIPZ Sh-TIMP1 (107) Horizon Discovery Cat# RHS4430-200284994- V3LHS_317107 GIPZ Sh-TIMP1 (110) Horizon Discovery Cat# RHS4430-200284918- V3LHS_317110 pLX313-Firefly luciferase Addgene plasmid Cat# 118017; RRID: Addgene_118017 GIPZ Empty Vector Horizon Discovery Cat# RHS4351 pSicoR-Ef1a-mCh Addgene plasmid Cat# 31847; RRID: Addgene_31847 Software and Algorithms Image J N/A https://imagej.nih.gov/ij/ RRID: SCR_003070 Aperio ImageScope Leica (V 12.3.2.8013) https://www.leicabiosystems.com/ digital-pathology/manage/aperioimagescope/RRID: SCR_014311 GraphPad Prism GraphPad software (V 8.4.2 (679)) https://www.graphpad.com/scientific- software/prism/RRID: SCR_002798 FlowJo FlowJo LLC https://www.flowjo.com/solutions/ flowjo RRID: SCR_008520 Sequence data, analyses Cell Ranger (3.1.0) 10X Genomics https://support.10xgenomics.com/ single-cell-gene-expression/software/ pipelines/latest/what-is-cell-ranger R v4.0.2 https://www.r-project.org/ NA (Continued on next page) e3 Cancer Cell 39, 1–15.e1–e9, January 11, 2021 ..

    RNA Sequencing:

    Article Title: Senescence Reprogramming by TIMP1 Deficiency Promotes Prostate Cancer Metastasis.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Deposited Data Microarray GEO GSE21032 DNA methylation dataset GEO GSE73549 DNA methylation dataset GEO GSE38240 scRNA-seq This paper ArrayExpress: E-MTAB-9578 RNA-seq This paper ArrayExpress: E-MTAB-9624 Experimental Models: Cell Lines PC3 ATCC Cat# CRL-1435; RRID: CVCL_0035 293T HEK ATCC Cat# CRL-11268; RRID: CVCL_1926 Mouse Embryonic Fibroblasts (MEFs) This paper, see methods N/A Experimental Models: Organisms/Strains Mouse: Ptenpc-/- Chen Z, et al. 2005 N/A Mouse: Ptenpc-/-; Trp53pc-/- Chen Z, et al. 2005 N/A Mouse: TIMP-/- (TIMP1 B6.129S4-Timp1tm1Pds/J) The Jackson Laboratory Cat# 006243 RRID: IMSR_JAX:006243 Mouse: B6.SJL-Ptprca Pepcb/BoyCrl (C57BL6-Ly5.1) Charles River N/A Oligonucleotides See Table S3 Recombinant DNA pMSCV-CRE-PURO-IRES-GFP Addgene plasmid Cat# 50935; RRID: Addgene_50935 pMSCVPURO-IRES-GFP Addgene plasmid Cat# 18751; RRID: Addgene_18751 GIPZ Sh-TIMP1 (107) Horizon Discovery Cat# RHS4430-200284994- V3LHS_317107 GIPZ Sh-TIMP1 (110) Horizon Discovery Cat# RHS4430-200284918- V3LHS_317110 pLX313-Firefly luciferase Addgene plasmid Cat# 118017; RRID: Addgene_118017 GIPZ Empty Vector Horizon Discovery Cat# RHS4351 pSicoR-Ef1a-mCh Addgene plasmid Cat# 31847; RRID: Addgene_31847 Software and Algorithms Image J N/A https://imagej.nih.gov/ij/ RRID: SCR_003070 Aperio ImageScope Leica (V 12.3.2.8013) https://www.leicabiosystems.com/ digital-pathology/manage/aperioimagescope/RRID: SCR_014311 GraphPad Prism GraphPad software (V 8.4.2 (679)) https://www.graphpad.com/scientific- software/prism/RRID: SCR_002798 FlowJo FlowJo LLC https://www.flowjo.com/solutions/ flowjo RRID: SCR_008520 Sequence data, analyses Cell Ranger (3.1.0) 10X Genomics https://support.10xgenomics.com/ single-cell-gene-expression/software/ pipelines/latest/what-is-cell-ranger R v4.0.2 https://www.r-project.org/ NA (Continued on next page) e3 Cancer Cell 39, 1–15.e1–e9, January 11, 2021 .. REAGENT or RESOURCE SOURCE IDENTIFIER Deposited Data Microarray GEO GSE21032 DNA methylation dataset GEO GSE73549 DNA methylation dataset GEO GSE38240 scRNA-seq This paper ArrayExpress: E-MTAB-9578 RNA-seq This paper ArrayExpress: E-MTAB-9624 Experimental Models: Cell Lines PC3 ATCC Cat# CRL-1435; RRID: CVCL_0035 293T HEK ATCC Cat# CRL-11268; RRID: CVCL_1926 Mouse Embryonic Fibroblasts (MEFs) This paper, see methods N/A Experimental Models: Organisms/Strains Mouse: Ptenpc-/- Chen Z, et al. 2005 N/A Mouse: Ptenpc-/-; Trp53pc-/- Chen Z, et al. 2005 N/A Mouse: TIMP-/- (TIMP1 B6.129S4-Timp1tm1Pds/J) The Jackson Laboratory Cat# 006243 RRID: IMSR_JAX:006243 Mouse: B6.SJL-Ptprca Pepcb/BoyCrl (C57BL6-Ly5.1) Charles River N/A Oligonucleotides See Table S3 Recombinant DNA pMSCV-CRE-PURO-IRES-GFP Addgene plasmid Cat# 50935; RRID: Addgene_50935 pMSCVPURO-IRES-GFP Addgene plasmid Cat# 18751; RRID: Addgene_18751 GIPZ Sh-TIMP1 (107) Horizon Discovery Cat# RHS4430-200284994- V3LHS_317107 GIPZ Sh-TIMP1 (110) Horizon Discovery Cat# RHS4430-200284918- V3LHS_317110 pLX313-Firefly luciferase Addgene plasmid Cat# 118017; RRID: Addgene_118017 GIPZ Empty Vector Horizon Discovery Cat# RHS4351 pSicoR-Ef1a-mCh Addgene plasmid Cat# 31847; RRID: Addgene_31847 Software and Algorithms Image J N/A https://imagej.nih.gov/ij/ RRID: SCR_003070 Aperio ImageScope Leica (V 12.3.2.8013) https://www.leicabiosystems.com/ digital-pathology/manage/aperioimagescope/RRID: SCR_014311 GraphPad Prism GraphPad software (V 8.4.2 (679)) https://www.graphpad.com/scientific- software/prism/RRID: SCR_002798 FlowJo FlowJo LLC https://www.flowjo.com/solutions/ flowjo RRID: SCR_008520 Sequence data, analyses Cell Ranger (3.1.0) 10X Genomics https://support.10xgenomics.com/ single-cell-gene-expression/software/ pipelines/latest/what-is-cell-ranger R v4.0.2 https://www.r-project.org/ NA (Continued on next page) e3 Cancer Cell 39, 1–15.e1–e9, January 11, 2021 ..

    Recombinant:

    Article Title: Senescence Reprogramming by TIMP1 Deficiency Promotes Prostate Cancer Metastasis.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Deposited Data Microarray GEO GSE21032 DNA methylation dataset GEO GSE73549 DNA methylation dataset GEO GSE38240 scRNA-seq This paper ArrayExpress: E-MTAB-9578 RNA-seq This paper ArrayExpress: E-MTAB-9624 Experimental Models: Cell Lines PC3 ATCC Cat# CRL-1435; RRID: CVCL_0035 293T HEK ATCC Cat# CRL-11268; RRID: CVCL_1926 Mouse Embryonic Fibroblasts (MEFs) This paper, see methods N/A Experimental Models: Organisms/Strains Mouse: Ptenpc-/- Chen Z, et al. 2005 N/A Mouse: Ptenpc-/-; Trp53pc-/- Chen Z, et al. 2005 N/A Mouse: TIMP-/- (TIMP1 B6.129S4-Timp1tm1Pds/J) The Jackson Laboratory Cat# 006243 RRID: IMSR_JAX:006243 Mouse: B6.SJL-Ptprca Pepcb/BoyCrl (C57BL6-Ly5.1) Charles River N/A Oligonucleotides See Table S3 Recombinant DNA pMSCV-CRE-PURO-IRES-GFP Addgene plasmid Cat# 50935; RRID: Addgene_50935 pMSCVPURO-IRES-GFP Addgene plasmid Cat# 18751; RRID: Addgene_18751 GIPZ Sh-TIMP1 (107) Horizon Discovery Cat# RHS4430-200284994- V3LHS_317107 GIPZ Sh-TIMP1 (110) Horizon Discovery Cat# RHS4430-200284918- V3LHS_317110 pLX313-Firefly luciferase Addgene plasmid Cat# 118017; RRID: Addgene_118017 GIPZ Empty Vector Horizon Discovery Cat# RHS4351 pSicoR-Ef1a-mCh Addgene plasmid Cat# 31847; RRID: Addgene_31847 Software and Algorithms Image J N/A https://imagej.nih.gov/ij/ RRID: SCR_003070 Aperio ImageScope Leica (V 12.3.2.8013) https://www.leicabiosystems.com/ digital-pathology/manage/aperioimagescope/RRID: SCR_014311 GraphPad Prism GraphPad software (V 8.4.2 (679)) https://www.graphpad.com/scientific- software/prism/RRID: SCR_002798 FlowJo FlowJo LLC https://www.flowjo.com/solutions/ flowjo RRID: SCR_008520 Sequence data, analyses Cell Ranger (3.1.0) 10X Genomics https://support.10xgenomics.com/ single-cell-gene-expression/software/ pipelines/latest/what-is-cell-ranger R v4.0.2 https://www.r-project.org/ NA (Continued on next page) e3 Cancer Cell 39, 1–15.e1–e9, January 11, 2021 .. REAGENT or RESOURCE SOURCE IDENTIFIER Deposited Data Microarray GEO GSE21032 DNA methylation dataset GEO GSE73549 DNA methylation dataset GEO GSE38240 scRNA-seq This paper ArrayExpress: E-MTAB-9578 RNA-seq This paper ArrayExpress: E-MTAB-9624 Experimental Models: Cell Lines PC3 ATCC Cat# CRL-1435; RRID: CVCL_0035 293T HEK ATCC Cat# CRL-11268; RRID: CVCL_1926 Mouse Embryonic Fibroblasts (MEFs) This paper, see methods N/A Experimental Models: Organisms/Strains Mouse: Ptenpc-/- Chen Z, et al. 2005 N/A Mouse: Ptenpc-/-; Trp53pc-/- Chen Z, et al. 2005 N/A Mouse: TIMP-/- (TIMP1 B6.129S4-Timp1tm1Pds/J) The Jackson Laboratory Cat# 006243 RRID: IMSR_JAX:006243 Mouse: B6.SJL-Ptprca Pepcb/BoyCrl (C57BL6-Ly5.1) Charles River N/A Oligonucleotides See Table S3 Recombinant DNA pMSCV-CRE-PURO-IRES-GFP Addgene plasmid Cat# 50935; RRID: Addgene_50935 pMSCVPURO-IRES-GFP Addgene plasmid Cat# 18751; RRID: Addgene_18751 GIPZ Sh-TIMP1 (107) Horizon Discovery Cat# RHS4430-200284994- V3LHS_317107 GIPZ Sh-TIMP1 (110) Horizon Discovery Cat# RHS4430-200284918- V3LHS_317110 pLX313-Firefly luciferase Addgene plasmid Cat# 118017; RRID: Addgene_118017 GIPZ Empty Vector Horizon Discovery Cat# RHS4351 pSicoR-Ef1a-mCh Addgene plasmid Cat# 31847; RRID: Addgene_31847 Software and Algorithms Image J N/A https://imagej.nih.gov/ij/ RRID: SCR_003070 Aperio ImageScope Leica (V 12.3.2.8013) https://www.leicabiosystems.com/ digital-pathology/manage/aperioimagescope/RRID: SCR_014311 GraphPad Prism GraphPad software (V 8.4.2 (679)) https://www.graphpad.com/scientific- software/prism/RRID: SCR_002798 FlowJo FlowJo LLC https://www.flowjo.com/solutions/ flowjo RRID: SCR_008520 Sequence data, analyses Cell Ranger (3.1.0) 10X Genomics https://support.10xgenomics.com/ single-cell-gene-expression/software/ pipelines/latest/what-is-cell-ranger R v4.0.2 https://www.r-project.org/ NA (Continued on next page) e3 Cancer Cell 39, 1–15.e1–e9, January 11, 2021 ..

    Luciferase:

    Article Title: Senescence Reprogramming by TIMP1 Deficiency Promotes Prostate Cancer Metastasis.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Deposited Data Microarray GEO GSE21032 DNA methylation dataset GEO GSE73549 DNA methylation dataset GEO GSE38240 scRNA-seq This paper ArrayExpress: E-MTAB-9578 RNA-seq This paper ArrayExpress: E-MTAB-9624 Experimental Models: Cell Lines PC3 ATCC Cat# CRL-1435; RRID: CVCL_0035 293T HEK ATCC Cat# CRL-11268; RRID: CVCL_1926 Mouse Embryonic Fibroblasts (MEFs) This paper, see methods N/A Experimental Models: Organisms/Strains Mouse: Ptenpc-/- Chen Z, et al. 2005 N/A Mouse: Ptenpc-/-; Trp53pc-/- Chen Z, et al. 2005 N/A Mouse: TIMP-/- (TIMP1 B6.129S4-Timp1tm1Pds/J) The Jackson Laboratory Cat# 006243 RRID: IMSR_JAX:006243 Mouse: B6.SJL-Ptprca Pepcb/BoyCrl (C57BL6-Ly5.1) Charles River N/A Oligonucleotides See Table S3 Recombinant DNA pMSCV-CRE-PURO-IRES-GFP Addgene plasmid Cat# 50935; RRID: Addgene_50935 pMSCVPURO-IRES-GFP Addgene plasmid Cat# 18751; RRID: Addgene_18751 GIPZ Sh-TIMP1 (107) Horizon Discovery Cat# RHS4430-200284994- V3LHS_317107 GIPZ Sh-TIMP1 (110) Horizon Discovery Cat# RHS4430-200284918- V3LHS_317110 pLX313-Firefly luciferase Addgene plasmid Cat# 118017; RRID: Addgene_118017 GIPZ Empty Vector Horizon Discovery Cat# RHS4351 pSicoR-Ef1a-mCh Addgene plasmid Cat# 31847; RRID: Addgene_31847 Software and Algorithms Image J N/A https://imagej.nih.gov/ij/ RRID: SCR_003070 Aperio ImageScope Leica (V 12.3.2.8013) https://www.leicabiosystems.com/ digital-pathology/manage/aperioimagescope/RRID: SCR_014311 GraphPad Prism GraphPad software (V 8.4.2 (679)) https://www.graphpad.com/scientific- software/prism/RRID: SCR_002798 FlowJo FlowJo LLC https://www.flowjo.com/solutions/ flowjo RRID: SCR_008520 Sequence data, analyses Cell Ranger (3.1.0) 10X Genomics https://support.10xgenomics.com/ single-cell-gene-expression/software/ pipelines/latest/what-is-cell-ranger R v4.0.2 https://www.r-project.org/ NA (Continued on next page) e3 Cancer Cell 39, 1–15.e1–e9, January 11, 2021 .. REAGENT or RESOURCE SOURCE IDENTIFIER Deposited Data Microarray GEO GSE21032 DNA methylation dataset GEO GSE73549 DNA methylation dataset GEO GSE38240 scRNA-seq This paper ArrayExpress: E-MTAB-9578 RNA-seq This paper ArrayExpress: E-MTAB-9624 Experimental Models: Cell Lines PC3 ATCC Cat# CRL-1435; RRID: CVCL_0035 293T HEK ATCC Cat# CRL-11268; RRID: CVCL_1926 Mouse Embryonic Fibroblasts (MEFs) This paper, see methods N/A Experimental Models: Organisms/Strains Mouse: Ptenpc-/- Chen Z, et al. 2005 N/A Mouse: Ptenpc-/-; Trp53pc-/- Chen Z, et al. 2005 N/A Mouse: TIMP-/- (TIMP1 B6.129S4-Timp1tm1Pds/J) The Jackson Laboratory Cat# 006243 RRID: IMSR_JAX:006243 Mouse: B6.SJL-Ptprca Pepcb/BoyCrl (C57BL6-Ly5.1) Charles River N/A Oligonucleotides See Table S3 Recombinant DNA pMSCV-CRE-PURO-IRES-GFP Addgene plasmid Cat# 50935; RRID: Addgene_50935 pMSCVPURO-IRES-GFP Addgene plasmid Cat# 18751; RRID: Addgene_18751 GIPZ Sh-TIMP1 (107) Horizon Discovery Cat# RHS4430-200284994- V3LHS_317107 GIPZ Sh-TIMP1 (110) Horizon Discovery Cat# RHS4430-200284918- V3LHS_317110 pLX313-Firefly luciferase Addgene plasmid Cat# 118017; RRID: Addgene_118017 GIPZ Empty Vector Horizon Discovery Cat# RHS4351 pSicoR-Ef1a-mCh Addgene plasmid Cat# 31847; RRID: Addgene_31847 Software and Algorithms Image J N/A https://imagej.nih.gov/ij/ RRID: SCR_003070 Aperio ImageScope Leica (V 12.3.2.8013) https://www.leicabiosystems.com/ digital-pathology/manage/aperioimagescope/RRID: SCR_014311 GraphPad Prism GraphPad software (V 8.4.2 (679)) https://www.graphpad.com/scientific- software/prism/RRID: SCR_002798 FlowJo FlowJo LLC https://www.flowjo.com/solutions/ flowjo RRID: SCR_008520 Sequence data, analyses Cell Ranger (3.1.0) 10X Genomics https://support.10xgenomics.com/ single-cell-gene-expression/software/ pipelines/latest/what-is-cell-ranger R v4.0.2 https://www.r-project.org/ NA (Continued on next page) e3 Cancer Cell 39, 1–15.e1–e9, January 11, 2021 ..

    Software:

    Article Title: Senescence Reprogramming by TIMP1 Deficiency Promotes Prostate Cancer Metastasis.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Deposited Data Microarray GEO GSE21032 DNA methylation dataset GEO GSE73549 DNA methylation dataset GEO GSE38240 scRNA-seq This paper ArrayExpress: E-MTAB-9578 RNA-seq This paper ArrayExpress: E-MTAB-9624 Experimental Models: Cell Lines PC3 ATCC Cat# CRL-1435; RRID: CVCL_0035 293T HEK ATCC Cat# CRL-11268; RRID: CVCL_1926 Mouse Embryonic Fibroblasts (MEFs) This paper, see methods N/A Experimental Models: Organisms/Strains Mouse: Ptenpc-/- Chen Z, et al. 2005 N/A Mouse: Ptenpc-/-; Trp53pc-/- Chen Z, et al. 2005 N/A Mouse: TIMP-/- (TIMP1 B6.129S4-Timp1tm1Pds/J) The Jackson Laboratory Cat# 006243 RRID: IMSR_JAX:006243 Mouse: B6.SJL-Ptprca Pepcb/BoyCrl (C57BL6-Ly5.1) Charles River N/A Oligonucleotides See Table S3 Recombinant DNA pMSCV-CRE-PURO-IRES-GFP Addgene plasmid Cat# 50935; RRID: Addgene_50935 pMSCVPURO-IRES-GFP Addgene plasmid Cat# 18751; RRID: Addgene_18751 GIPZ Sh-TIMP1 (107) Horizon Discovery Cat# RHS4430-200284994- V3LHS_317107 GIPZ Sh-TIMP1 (110) Horizon Discovery Cat# RHS4430-200284918- V3LHS_317110 pLX313-Firefly luciferase Addgene plasmid Cat# 118017; RRID: Addgene_118017 GIPZ Empty Vector Horizon Discovery Cat# RHS4351 pSicoR-Ef1a-mCh Addgene plasmid Cat# 31847; RRID: Addgene_31847 Software and Algorithms Image J N/A https://imagej.nih.gov/ij/ RRID: SCR_003070 Aperio ImageScope Leica (V 12.3.2.8013) https://www.leicabiosystems.com/ digital-pathology/manage/aperioimagescope/RRID: SCR_014311 GraphPad Prism GraphPad software (V 8.4.2 (679)) https://www.graphpad.com/scientific- software/prism/RRID: SCR_002798 FlowJo FlowJo LLC https://www.flowjo.com/solutions/ flowjo RRID: SCR_008520 Sequence data, analyses Cell Ranger (3.1.0) 10X Genomics https://support.10xgenomics.com/ single-cell-gene-expression/software/ pipelines/latest/what-is-cell-ranger R v4.0.2 https://www.r-project.org/ NA (Continued on next page) e3 Cancer Cell 39, 1–15.e1–e9, January 11, 2021 .. REAGENT or RESOURCE SOURCE IDENTIFIER Deposited Data Microarray GEO GSE21032 DNA methylation dataset GEO GSE73549 DNA methylation dataset GEO GSE38240 scRNA-seq This paper ArrayExpress: E-MTAB-9578 RNA-seq This paper ArrayExpress: E-MTAB-9624 Experimental Models: Cell Lines PC3 ATCC Cat# CRL-1435; RRID: CVCL_0035 293T HEK ATCC Cat# CRL-11268; RRID: CVCL_1926 Mouse Embryonic Fibroblasts (MEFs) This paper, see methods N/A Experimental Models: Organisms/Strains Mouse: Ptenpc-/- Chen Z, et al. 2005 N/A Mouse: Ptenpc-/-; Trp53pc-/- Chen Z, et al. 2005 N/A Mouse: TIMP-/- (TIMP1 B6.129S4-Timp1tm1Pds/J) The Jackson Laboratory Cat# 006243 RRID: IMSR_JAX:006243 Mouse: B6.SJL-Ptprca Pepcb/BoyCrl (C57BL6-Ly5.1) Charles River N/A Oligonucleotides See Table S3 Recombinant DNA pMSCV-CRE-PURO-IRES-GFP Addgene plasmid Cat# 50935; RRID: Addgene_50935 pMSCVPURO-IRES-GFP Addgene plasmid Cat# 18751; RRID: Addgene_18751 GIPZ Sh-TIMP1 (107) Horizon Discovery Cat# RHS4430-200284994- V3LHS_317107 GIPZ Sh-TIMP1 (110) Horizon Discovery Cat# RHS4430-200284918- V3LHS_317110 pLX313-Firefly luciferase Addgene plasmid Cat# 118017; RRID: Addgene_118017 GIPZ Empty Vector Horizon Discovery Cat# RHS4351 pSicoR-Ef1a-mCh Addgene plasmid Cat# 31847; RRID: Addgene_31847 Software and Algorithms Image J N/A https://imagej.nih.gov/ij/ RRID: SCR_003070 Aperio ImageScope Leica (V 12.3.2.8013) https://www.leicabiosystems.com/ digital-pathology/manage/aperioimagescope/RRID: SCR_014311 GraphPad Prism GraphPad software (V 8.4.2 (679)) https://www.graphpad.com/scientific- software/prism/RRID: SCR_002798 FlowJo FlowJo LLC https://www.flowjo.com/solutions/ flowjo RRID: SCR_008520 Sequence data, analyses Cell Ranger (3.1.0) 10X Genomics https://support.10xgenomics.com/ single-cell-gene-expression/software/ pipelines/latest/what-is-cell-ranger R v4.0.2 https://www.r-project.org/ NA (Continued on next page) e3 Cancer Cell 39, 1–15.e1–e9, January 11, 2021 ..

    Sequencing:

    Article Title: Senescence Reprogramming by TIMP1 Deficiency Promotes Prostate Cancer Metastasis.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Deposited Data Microarray GEO GSE21032 DNA methylation dataset GEO GSE73549 DNA methylation dataset GEO GSE38240 scRNA-seq This paper ArrayExpress: E-MTAB-9578 RNA-seq This paper ArrayExpress: E-MTAB-9624 Experimental Models: Cell Lines PC3 ATCC Cat# CRL-1435; RRID: CVCL_0035 293T HEK ATCC Cat# CRL-11268; RRID: CVCL_1926 Mouse Embryonic Fibroblasts (MEFs) This paper, see methods N/A Experimental Models: Organisms/Strains Mouse: Ptenpc-/- Chen Z, et al. 2005 N/A Mouse: Ptenpc-/-; Trp53pc-/- Chen Z, et al. 2005 N/A Mouse: TIMP-/- (TIMP1 B6.129S4-Timp1tm1Pds/J) The Jackson Laboratory Cat# 006243 RRID: IMSR_JAX:006243 Mouse: B6.SJL-Ptprca Pepcb/BoyCrl (C57BL6-Ly5.1) Charles River N/A Oligonucleotides See Table S3 Recombinant DNA pMSCV-CRE-PURO-IRES-GFP Addgene plasmid Cat# 50935; RRID: Addgene_50935 pMSCVPURO-IRES-GFP Addgene plasmid Cat# 18751; RRID: Addgene_18751 GIPZ Sh-TIMP1 (107) Horizon Discovery Cat# RHS4430-200284994- V3LHS_317107 GIPZ Sh-TIMP1 (110) Horizon Discovery Cat# RHS4430-200284918- V3LHS_317110 pLX313-Firefly luciferase Addgene plasmid Cat# 118017; RRID: Addgene_118017 GIPZ Empty Vector Horizon Discovery Cat# RHS4351 pSicoR-Ef1a-mCh Addgene plasmid Cat# 31847; RRID: Addgene_31847 Software and Algorithms Image J N/A https://imagej.nih.gov/ij/ RRID: SCR_003070 Aperio ImageScope Leica (V 12.3.2.8013) https://www.leicabiosystems.com/ digital-pathology/manage/aperioimagescope/RRID: SCR_014311 GraphPad Prism GraphPad software (V 8.4.2 (679)) https://www.graphpad.com/scientific- software/prism/RRID: SCR_002798 FlowJo FlowJo LLC https://www.flowjo.com/solutions/ flowjo RRID: SCR_008520 Sequence data, analyses Cell Ranger (3.1.0) 10X Genomics https://support.10xgenomics.com/ single-cell-gene-expression/software/ pipelines/latest/what-is-cell-ranger R v4.0.2 https://www.r-project.org/ NA (Continued on next page) e3 Cancer Cell 39, 1–15.e1–e9, January 11, 2021 .. REAGENT or RESOURCE SOURCE IDENTIFIER Deposited Data Microarray GEO GSE21032 DNA methylation dataset GEO GSE73549 DNA methylation dataset GEO GSE38240 scRNA-seq This paper ArrayExpress: E-MTAB-9578 RNA-seq This paper ArrayExpress: E-MTAB-9624 Experimental Models: Cell Lines PC3 ATCC Cat# CRL-1435; RRID: CVCL_0035 293T HEK ATCC Cat# CRL-11268; RRID: CVCL_1926 Mouse Embryonic Fibroblasts (MEFs) This paper, see methods N/A Experimental Models: Organisms/Strains Mouse: Ptenpc-/- Chen Z, et al. 2005 N/A Mouse: Ptenpc-/-; Trp53pc-/- Chen Z, et al. 2005 N/A Mouse: TIMP-/- (TIMP1 B6.129S4-Timp1tm1Pds/J) The Jackson Laboratory Cat# 006243 RRID: IMSR_JAX:006243 Mouse: B6.SJL-Ptprca Pepcb/BoyCrl (C57BL6-Ly5.1) Charles River N/A Oligonucleotides See Table S3 Recombinant DNA pMSCV-CRE-PURO-IRES-GFP Addgene plasmid Cat# 50935; RRID: Addgene_50935 pMSCVPURO-IRES-GFP Addgene plasmid Cat# 18751; RRID: Addgene_18751 GIPZ Sh-TIMP1 (107) Horizon Discovery Cat# RHS4430-200284994- V3LHS_317107 GIPZ Sh-TIMP1 (110) Horizon Discovery Cat# RHS4430-200284918- V3LHS_317110 pLX313-Firefly luciferase Addgene plasmid Cat# 118017; RRID: Addgene_118017 GIPZ Empty Vector Horizon Discovery Cat# RHS4351 pSicoR-Ef1a-mCh Addgene plasmid Cat# 31847; RRID: Addgene_31847 Software and Algorithms Image J N/A https://imagej.nih.gov/ij/ RRID: SCR_003070 Aperio ImageScope Leica (V 12.3.2.8013) https://www.leicabiosystems.com/ digital-pathology/manage/aperioimagescope/RRID: SCR_014311 GraphPad Prism GraphPad software (V 8.4.2 (679)) https://www.graphpad.com/scientific- software/prism/RRID: SCR_002798 FlowJo FlowJo LLC https://www.flowjo.com/solutions/ flowjo RRID: SCR_008520 Sequence data, analyses Cell Ranger (3.1.0) 10X Genomics https://support.10xgenomics.com/ single-cell-gene-expression/software/ pipelines/latest/what-is-cell-ranger R v4.0.2 https://www.r-project.org/ NA (Continued on next page) e3 Cancer Cell 39, 1–15.e1–e9, January 11, 2021 ..

    Polymerase Chain Reaction:

    Article Title: Lymph node macrophages drive immune tolerance and resistance to cancer therapy by induction of the immune-regulatory cytokine IL-33.
    Article Snippet: In brief Although immunity is an important component of cancer therapy responses, suppressive immune feedback restricting anti-tumor activity has not been extensively examined.. In this issue of Cancer Cell, Lamorte et al. identify expression of the cytokine IL-33 by lymph node macrophages after therapy as an important inhibitor of therapeutic efficacy.. Notably, antagonizing IL-33 function significantly increases therapeutic responses to chemoand targeted-therapy revealing IL-33 responses as an actionable target to augment anti-tumor immunity when chemotherapy or other therapeutic modalities are employed.

    Amplification:

    Article Title: Lymph node macrophages drive immune tolerance and resistance to cancer therapy by induction of the immune-regulatory cytokine IL-33.
    Article Snippet: In brief Although immunity is an important component of cancer therapy responses, suppressive immune feedback restricting anti-tumor activity has not been extensively examined.. In this issue of Cancer Cell, Lamorte et al. identify expression of the cytokine IL-33 by lymph node macrophages after therapy as an important inhibitor of therapeutic efficacy.. Notably, antagonizing IL-33 function significantly increases therapeutic responses to chemoand targeted-therapy revealing IL-33 responses as an actionable target to augment anti-tumor immunity when chemotherapy or other therapeutic modalities are employed.

    Virus:

    Article Title: Lymph node macrophages drive immune tolerance and resistance to cancer therapy by induction of the immune-regulatory cytokine IL-33.
    Article Snippet: In brief Although immunity is an important component of cancer therapy responses, suppressive immune feedback restricting anti-tumor activity has not been extensively examined.. In this issue of Cancer Cell, Lamorte et al. identify expression of the cytokine IL-33 by lymph node macrophages after therapy as an important inhibitor of therapeutic efficacy.. Notably, antagonizing IL-33 function significantly increases therapeutic responses to chemoand targeted-therapy revealing IL-33 responses as an actionable target to augment anti-tumor immunity when chemotherapy or other therapeutic modalities are employed.

    Countercurrent Chromatography:

    Article Title: Lymph node macrophages drive immune tolerance and resistance to cancer therapy by induction of the immune-regulatory cytokine IL-33.
    Article Snippet: In brief Although immunity is an important component of cancer therapy responses, suppressive immune feedback restricting anti-tumor activity has not been extensively examined.. In this issue of Cancer Cell, Lamorte et al. identify expression of the cytokine IL-33 by lymph node macrophages after therapy as an important inhibitor of therapeutic efficacy.. Notably, antagonizing IL-33 function significantly increases therapeutic responses to chemoand targeted-therapy revealing IL-33 responses as an actionable target to augment anti-tumor immunity when chemotherapy or other therapeutic modalities are employed.



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    SCIENION noncontact microarray printer
    <t>Microarray</t> analysis reveals the effects of GFAP mAb treatment on key inflammatory mediators in glaucomatous retina. ( A - C ) The expression of TLR4 and S100A8 was significantly downregulated by 25–50 µg GFAP mAb treatment compared to the vehicle. The marker for microglial activation, CD68, was significantly decreased in the 25 µg GFAP mAb treatment group. ( D - F ) Proteins of the inflammasome pathway, NLRP3, GSDMD and Caspase-1 were significantly downregulated in the 25 µg GFAP mAb treatment group. With the 50 µg dose, these protein expressions showed a similar downward trend, but without statistical significance. ( G ) Expression profiling of inflammation-associated mediators showed that 25 µg GFAP mAb significantly decreased pro-inflammatory factors (TNF-α, IL-1β, IL-8, MMP9, and IFN-γ), and increased the anti-inflammatory cytokine IL-10 compared to the vehicle group. In contrast, the 50 µg dose significantly reduced IFN-γ only. ( H ) Representative images of spots showing IL-1β levels in the subarrays for each group. Image analysis was conducted with Imagene software, using the median intensity from each spot to calculate the mean of the triplicate spots for each marker. For CD68 and TLR4, due to significant heterogeneity in SDs, statistical analysis was performed using Welch’s ANOVA followed by the Tamhane T2 post hoc test. All other data were analyzed using one-way ANOVA with Tukey’s post hoc test. Data are presented as the mean ± SD; n = 4 per group; * p < 0.05, ** p < 0.01, *** p < 0.001; ns = not significant. TLR4 – Toll-Like Receptor 4. S100A8 – S100 Calcium Binding Protein A8. NLRP3 – NLR Family Pyrin Domain Containing 3. GSDMD – Gasdermin D
    Noncontact Microarray Printer, supplied by SCIENION, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Probing receptor binding specificities of A(H3N2) and A(H1N1)pdm09. a) Collection of glycans printed on succinimide reactive <t>microarray</t> slides. Glycan binding data of b) early A(H3N2) and A(H3N2) 3C.2 viruses; c) A (H3N2) 3C.3 viruses; and d) A(H1N1)pdm09 viruses. Whole viruses were exposed to a glycan microarray, and binding was visualized antistalk antibodies. Bars represent the average relative fluorescence units (RFU) of four replicates ± SD.
    Noncontact Microarray Printer S3, supplied by SCIENION, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    SCIENION sciflexarrayer s3 noncontact microarray printer
    Probing receptor binding specificities of A(H3N2) and A(H1N1)pdm09. a) Collection of glycans printed on succinimide reactive <t>microarray</t> slides. Glycan binding data of b) early A(H3N2) and A(H3N2) 3C.2 viruses; c) A (H3N2) 3C.3 viruses; and d) A(H1N1)pdm09 viruses. Whole viruses were exposed to a glycan microarray, and binding was visualized antistalk antibodies. Bars represent the average relative fluorescence units (RFU) of four replicates ± SD.
    Sciflexarrayer S3 Noncontact Microarray Printer, supplied by SCIENION, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Probing receptor binding specificities of A(H3N2) and A(H1N1)pdm09. a) Collection of glycans printed on succinimide reactive <t>microarray</t> slides. Glycan binding data of b) early A(H3N2) and A(H3N2) 3C.2 viruses; c) A (H3N2) 3C.3 viruses; and d) A(H1N1)pdm09 viruses. Whole viruses were exposed to a glycan microarray, and binding was visualized antistalk antibodies. Bars represent the average relative fluorescence units (RFU) of four replicates ± SD.
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    Probing receptor binding specificities of A(H3N2) and A(H1N1)pdm09. a) Collection of glycans printed on succinimide reactive <t>microarray</t> slides. Glycan binding data of b) early A(H3N2) and A(H3N2) 3C.2 viruses; c) A (H3N2) 3C.3 viruses; and d) A(H1N1)pdm09 viruses. Whole viruses were exposed to a glycan microarray, and binding was visualized antistalk antibodies. Bars represent the average relative fluorescence units (RFU) of four replicates ± SD.
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    Image Search Results


    Microarray analysis reveals the effects of GFAP mAb treatment on key inflammatory mediators in glaucomatous retina. ( A - C ) The expression of TLR4 and S100A8 was significantly downregulated by 25–50 µg GFAP mAb treatment compared to the vehicle. The marker for microglial activation, CD68, was significantly decreased in the 25 µg GFAP mAb treatment group. ( D - F ) Proteins of the inflammasome pathway, NLRP3, GSDMD and Caspase-1 were significantly downregulated in the 25 µg GFAP mAb treatment group. With the 50 µg dose, these protein expressions showed a similar downward trend, but without statistical significance. ( G ) Expression profiling of inflammation-associated mediators showed that 25 µg GFAP mAb significantly decreased pro-inflammatory factors (TNF-α, IL-1β, IL-8, MMP9, and IFN-γ), and increased the anti-inflammatory cytokine IL-10 compared to the vehicle group. In contrast, the 50 µg dose significantly reduced IFN-γ only. ( H ) Representative images of spots showing IL-1β levels in the subarrays for each group. Image analysis was conducted with Imagene software, using the median intensity from each spot to calculate the mean of the triplicate spots for each marker. For CD68 and TLR4, due to significant heterogeneity in SDs, statistical analysis was performed using Welch’s ANOVA followed by the Tamhane T2 post hoc test. All other data were analyzed using one-way ANOVA with Tukey’s post hoc test. Data are presented as the mean ± SD; n = 4 per group; * p < 0.05, ** p < 0.01, *** p < 0.001; ns = not significant. TLR4 – Toll-Like Receptor 4. S100A8 – S100 Calcium Binding Protein A8. NLRP3 – NLR Family Pyrin Domain Containing 3. GSDMD – Gasdermin D

    Journal: Journal of Neuroinflammation

    Article Title: Targeting glial fibrillary acidic protein in glaucoma: a monoclonal antibody approach to modulate glial reactivity and neuroinflammation for neuroprotection

    doi: 10.1186/s12974-025-03482-8

    Figure Lengend Snippet: Microarray analysis reveals the effects of GFAP mAb treatment on key inflammatory mediators in glaucomatous retina. ( A - C ) The expression of TLR4 and S100A8 was significantly downregulated by 25–50 µg GFAP mAb treatment compared to the vehicle. The marker for microglial activation, CD68, was significantly decreased in the 25 µg GFAP mAb treatment group. ( D - F ) Proteins of the inflammasome pathway, NLRP3, GSDMD and Caspase-1 were significantly downregulated in the 25 µg GFAP mAb treatment group. With the 50 µg dose, these protein expressions showed a similar downward trend, but without statistical significance. ( G ) Expression profiling of inflammation-associated mediators showed that 25 µg GFAP mAb significantly decreased pro-inflammatory factors (TNF-α, IL-1β, IL-8, MMP9, and IFN-γ), and increased the anti-inflammatory cytokine IL-10 compared to the vehicle group. In contrast, the 50 µg dose significantly reduced IFN-γ only. ( H ) Representative images of spots showing IL-1β levels in the subarrays for each group. Image analysis was conducted with Imagene software, using the median intensity from each spot to calculate the mean of the triplicate spots for each marker. For CD68 and TLR4, due to significant heterogeneity in SDs, statistical analysis was performed using Welch’s ANOVA followed by the Tamhane T2 post hoc test. All other data were analyzed using one-way ANOVA with Tukey’s post hoc test. Data are presented as the mean ± SD; n = 4 per group; * p < 0.05, ** p < 0.01, *** p < 0.001; ns = not significant. TLR4 – Toll-Like Receptor 4. S100A8 – S100 Calcium Binding Protein A8. NLRP3 – NLR Family Pyrin Domain Containing 3. GSDMD – Gasdermin D

    Article Snippet: Briefly, the microarray was prepared using a noncontact microarray printer (SciFLEXARRAYER S3; Scienion, Berlin, Germany).

    Techniques: Microarray, Expressing, Marker, Activation Assay, Software, Binding Assay

    Probing receptor binding specificities of A(H3N2) and A(H1N1)pdm09. a) Collection of glycans printed on succinimide reactive microarray slides. Glycan binding data of b) early A(H3N2) and A(H3N2) 3C.2 viruses; c) A (H3N2) 3C.3 viruses; and d) A(H1N1)pdm09 viruses. Whole viruses were exposed to a glycan microarray, and binding was visualized antistalk antibodies. Bars represent the average relative fluorescence units (RFU) of four replicates ± SD.

    Journal: JACS Au

    Article Title: Asymmetrical Biantennary Glycans Prepared by a Stop-and-Go Strategy Reveal Receptor Binding Evolution of Human Influenza A Viruses

    doi: 10.1021/jacsau.3c00695

    Figure Lengend Snippet: Probing receptor binding specificities of A(H3N2) and A(H1N1)pdm09. a) Collection of glycans printed on succinimide reactive microarray slides. Glycan binding data of b) early A(H3N2) and A(H3N2) 3C.2 viruses; c) A (H3N2) 3C.3 viruses; and d) A(H1N1)pdm09 viruses. Whole viruses were exposed to a glycan microarray, and binding was visualized antistalk antibodies. Bars represent the average relative fluorescence units (RFU) of four replicates ± SD.

    Article Snippet: The glycans, which have an α-amine at the anomeric asparagine moiety, were printed on amine reactive NHS activated glass slides using a noncontact microarray printer ( S3 , Scienion, Inc.).

    Techniques: Binding Assay, Microarray, Glycoproteomics, Fluorescence