rice rna-seq database (SusTech GmbH)
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SusTech GmbH
rice rna-seq database
Rice Rna Seq Database, supplied by SusTech GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rna-seq+database/rice+rna+seq+database/pmc11022797-73-11-14
Average 90 stars, based on 1 article reviews
Rice Rna Seq Database, supplied by SusTech GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rna-seq+database/rice+rna+seq+database/pmc11022797-73-11-14
Average 90 stars, based on 1 article reviews
rice rna-seq database - by Bioz Stars,
2026-11
90/100 stars
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Derivative Assay:Article Title: QTL mapping and candidate gene analysis of element accumulation in rice grains via genome-wide association study and population genetic analysis Article Snippet: The most likely candidate gene(s) for each identified QTL were determined with the following criteria. (1) The annotated genes in the candidate region remained after transposons, retrotransposons, and hypothetical proteins were removed; (2) the putative candidate genes with low or almost no expression in various rice tissues were excluded ( https://plantrnadb.com/ricerna/ ); (3) when the target QTL contained previously cloned genes for elements, the known genes were first regarded as the most likely candidate genes of corresponding QTLs; (4) genes homologous to cloned genes that have been reported to be associated with element accumulation- or tolerance-related traits in rice; (5) target genes associated with heavy metals in Gene Ontology (GO) annotation analysis; (6) for the QTLs identified for Cd, their expression changes before and after Cd treatment were obtained and calculated from the Rice RNA-seq Database ( Article Title: Genome-wide association study of rice (Oryza sativa L.) inflorescence architecture. Article Snippet: The expression data for panicle (young panicle-milky stage; R6 flowering stage) representing reproductive tissues and stem (three-leaf stage), representing vegetative tissues, was obtained from the Article Title: Conservation and divergence of OsGSTU9 and OsGSTU19 in cadmium detoxification and accumulation in rice. Article Snippet: • The tau GSTs are likely evolved from streptophyte algae, and OsGSTU9 and OsGSTU19 are highly homologous.. • Root preferentially expressed OsGSTU9 and OsGSTU19 are differentially upregulated in rice root sections under Cd Article Title: Genetic mapping of regions associated with root system architecture in rice using MutMap QTL-seq. Article Snippet: The root system architecture is an important complex trait in rice.. With changing climatic conditions and soil nutrient deficiencies, there is an immediate need to breed nutrient-use-efficient rice varieties with robust root system architectural (RSA) traits.. To map the genomic regions associated with crucial component traits of RSA viz. root length and root volume, a biparental F2 mapping population was developed using TI-128, an Ethyl Methane Sulphonate (EMS) mutant of a mega variety BPT-5204 having high root length (RL) and root volume (RV) with wild type BPT-5204. Article Title: Genome-Wide Analysis of the Histone Modification Gene ( HM ) Family and Expression Investigation during Anther Development in Rice ( Oryza sativa L.) Article Snippet: Expression data of OsHM gene family members under different abiotic stress conditions, including flooding stress, heat stress, drought stress, cold stress, and salt stress were obtained from rice RNA-seq database RNA Sequencing:Article Title: QTL mapping and candidate gene analysis of element accumulation in rice grains via genome-wide association study and population genetic analysis Article Snippet: The most likely candidate gene(s) for each identified QTL were determined with the following criteria. (1) The annotated genes in the candidate region remained after transposons, retrotransposons, and hypothetical proteins were removed; (2) the putative candidate genes with low or almost no expression in various rice tissues were excluded ( https://plantrnadb.com/ricerna/ ); (3) when the target QTL contained previously cloned genes for elements, the known genes were first regarded as the most likely candidate genes of corresponding QTLs; (4) genes homologous to cloned genes that have been reported to be associated with element accumulation- or tolerance-related traits in rice; (5) target genes associated with heavy metals in Gene Ontology (GO) annotation analysis; (6) for the QTLs identified for Cd, their expression changes before and after Cd treatment were obtained and calculated from the Rice RNA-seq Database ( Article Title: Genome-wide association study of rice (Oryza sativa L.) inflorescence architecture. Article Snippet: The expression data for panicle (young panicle-milky stage; R6 flowering stage) representing reproductive tissues and stem (three-leaf stage), representing vegetative tissues, was obtained from the Article Title: Conservation and divergence of OsGSTU9 and OsGSTU19 in cadmium detoxification and accumulation in rice. Article Snippet: • The tau GSTs are likely evolved from streptophyte algae, and OsGSTU9 and OsGSTU19 are highly homologous.. • Root preferentially expressed OsGSTU9 and OsGSTU19 are differentially upregulated in rice root sections under Cd Article Title: Genetic mapping of regions associated with root system architecture in rice using MutMap QTL-seq. Article Snippet: The root system architecture is an important complex trait in rice.. With changing climatic conditions and soil nutrient deficiencies, there is an immediate need to breed nutrient-use-efficient rice varieties with robust root system architectural (RSA) traits.. To map the genomic regions associated with crucial component traits of RSA viz. root length and root volume, a biparental F2 mapping population was developed using TI-128, an Ethyl Methane Sulphonate (EMS) mutant of a mega variety BPT-5204 having high root length (RL) and root volume (RV) with wild type BPT-5204. Article Title: Genome-Wide Analysis of the Histone Modification Gene ( HM ) Family and Expression Investigation during Anther Development in Rice ( Oryza sativa L.) Article Snippet: Expression data of OsHM gene family members under different abiotic stress conditions, including flooding stress, heat stress, drought stress, cold stress, and salt stress were obtained from rice RNA-seq database Generated:Article Title: QTL mapping and candidate gene analysis of element accumulation in rice grains via genome-wide association study and population genetic analysis Article Snippet: The most likely candidate gene(s) for each identified QTL were determined with the following criteria. (1) The annotated genes in the candidate region remained after transposons, retrotransposons, and hypothetical proteins were removed; (2) the putative candidate genes with low or almost no expression in various rice tissues were excluded ( https://plantrnadb.com/ricerna/ ); (3) when the target QTL contained previously cloned genes for elements, the known genes were first regarded as the most likely candidate genes of corresponding QTLs; (4) genes homologous to cloned genes that have been reported to be associated with element accumulation- or tolerance-related traits in rice; (5) target genes associated with heavy metals in Gene Ontology (GO) annotation analysis; (6) for the QTLs identified for Cd, their expression changes before and after Cd treatment were obtained and calculated from the Rice RNA-seq Database ( Article Title: Genome-wide association study of rice (Oryza sativa L.) inflorescence architecture. Article Snippet: The expression data for panicle (young panicle-milky stage; R6 flowering stage) representing reproductive tissues and stem (three-leaf stage), representing vegetative tissues, was obtained from the Article Title: Conservation and divergence of OsGSTU9 and OsGSTU19 in cadmium detoxification and accumulation in rice. Article Snippet: • The tau GSTs are likely evolved from streptophyte algae, and OsGSTU9 and OsGSTU19 are highly homologous.. • Root preferentially expressed OsGSTU9 and OsGSTU19 are differentially upregulated in rice root sections under Cd Article Title: Genetic mapping of regions associated with root system architecture in rice using MutMap QTL-seq. Article Snippet: The root system architecture is an important complex trait in rice.. With changing climatic conditions and soil nutrient deficiencies, there is an immediate need to breed nutrient-use-efficient rice varieties with robust root system architectural (RSA) traits.. To map the genomic regions associated with crucial component traits of RSA viz. root length and root volume, a biparental F2 mapping population was developed using TI-128, an Ethyl Methane Sulphonate (EMS) mutant of a mega variety BPT-5204 having high root length (RL) and root volume (RV) with wild type BPT-5204. Article Title: Genome-Wide Analysis of the Histone Modification Gene ( HM ) Family and Expression Investigation during Anther Development in Rice ( Oryza sativa L.) Article Snippet: Expression data of OsHM gene family members under different abiotic stress conditions, including flooding stress, heat stress, drought stress, cold stress, and salt stress were obtained from rice RNA-seq database Expressing:Article Title: QTL mapping and candidate gene analysis of element accumulation in rice grains via genome-wide association study and population genetic analysis Article Snippet: The most likely candidate gene(s) for each identified QTL were determined with the following criteria. (1) The annotated genes in the candidate region remained after transposons, retrotransposons, and hypothetical proteins were removed; (2) the putative candidate genes with low or almost no expression in various rice tissues were excluded ( https://plantrnadb.com/ricerna/ ); (3) when the target QTL contained previously cloned genes for elements, the known genes were first regarded as the most likely candidate genes of corresponding QTLs; (4) genes homologous to cloned genes that have been reported to be associated with element accumulation- or tolerance-related traits in rice; (5) target genes associated with heavy metals in Gene Ontology (GO) annotation analysis; (6) for the QTLs identified for Cd, their expression changes before and after Cd treatment were obtained and calculated from the Rice RNA-seq Database ( Article Title: Genome-wide association study of rice (Oryza sativa L.) inflorescence architecture. Article Snippet: The expression data for panicle (young panicle-milky stage; R6 flowering stage) representing reproductive tissues and stem (three-leaf stage), representing vegetative tissues, was obtained from the Article Title: Conservation and divergence of OsGSTU9 and OsGSTU19 in cadmium detoxification and accumulation in rice. Article Snippet: • The tau GSTs are likely evolved from streptophyte algae, and OsGSTU9 and OsGSTU19 are highly homologous.. • Root preferentially expressed OsGSTU9 and OsGSTU19 are differentially upregulated in rice root sections under Cd Article Title: Genetic mapping of regions associated with root system architecture in rice using MutMap QTL-seq. Article Snippet: The root system architecture is an important complex trait in rice.. With changing climatic conditions and soil nutrient deficiencies, there is an immediate need to breed nutrient-use-efficient rice varieties with robust root system architectural (RSA) traits.. To map the genomic regions associated with crucial component traits of RSA viz. root length and root volume, a biparental F2 mapping population was developed using TI-128, an Ethyl Methane Sulphonate (EMS) mutant of a mega variety BPT-5204 having high root length (RL) and root volume (RV) with wild type BPT-5204. Article Title: Genome-Wide Analysis of the Histone Modification Gene ( HM ) Family and Expression Investigation during Anther Development in Rice ( Oryza sativa L.) Article Snippet: Expression data of OsHM gene family members under different abiotic stress conditions, including flooding stress, heat stress, drought stress, cold stress, and salt stress were obtained from rice RNA-seq database Clone Assay:Article Title: QTL mapping and candidate gene analysis of element accumulation in rice grains via genome-wide association study and population genetic analysis Article Snippet: The most likely candidate gene(s) for each identified QTL were determined with the following criteria. (1) The annotated genes in the candidate region remained after transposons, retrotransposons, and hypothetical proteins were removed; (2) the putative candidate genes with low or almost no expression in various rice tissues were excluded ( https://plantrnadb.com/ricerna/ ); (3) when the target QTL contained previously cloned genes for elements, the known genes were first regarded as the most likely candidate genes of corresponding QTLs; (4) genes homologous to cloned genes that have been reported to be associated with element accumulation- or tolerance-related traits in rice; (5) target genes associated with heavy metals in Gene Ontology (GO) annotation analysis; (6) for the QTLs identified for Cd, their expression changes before and after Cd treatment were obtained and calculated from the Rice RNA-seq Database ( Article Title: Genome-wide association study of rice (Oryza sativa L.) inflorescence architecture. Article Snippet: The expression data for panicle (young panicle-milky stage; R6 flowering stage) representing reproductive tissues and stem (three-leaf stage), representing vegetative tissues, was obtained from the Article Title: Conservation and divergence of OsGSTU9 and OsGSTU19 in cadmium detoxification and accumulation in rice. Article Snippet: • The tau GSTs are likely evolved from streptophyte algae, and OsGSTU9 and OsGSTU19 are highly homologous.. • Root preferentially expressed OsGSTU9 and OsGSTU19 are differentially upregulated in rice root sections under Cd Article Title: Genetic mapping of regions associated with root system architecture in rice using MutMap QTL-seq. Article Snippet: The root system architecture is an important complex trait in rice.. With changing climatic conditions and soil nutrient deficiencies, there is an immediate need to breed nutrient-use-efficient rice varieties with robust root system architectural (RSA) traits.. To map the genomic regions associated with crucial component traits of RSA viz. root length and root volume, a biparental F2 mapping population was developed using TI-128, an Ethyl Methane Sulphonate (EMS) mutant of a mega variety BPT-5204 having high root length (RL) and root volume (RV) with wild type BPT-5204. Article Title: Genome-Wide Analysis of the Histone Modification Gene ( HM ) Family and Expression Investigation during Anther Development in Rice ( Oryza sativa L.) Article Snippet: Expression data of OsHM gene family members under different abiotic stress conditions, including flooding stress, heat stress, drought stress, cold stress, and salt stress were obtained from rice RNA-seq database Gene Expression:Article Title: QTL mapping and candidate gene analysis of element accumulation in rice grains via genome-wide association study and population genetic analysis Article Snippet: The most likely candidate gene(s) for each identified QTL were determined with the following criteria. (1) The annotated genes in the candidate region remained after transposons, retrotransposons, and hypothetical proteins were removed; (2) the putative candidate genes with low or almost no expression in various rice tissues were excluded ( https://plantrnadb.com/ricerna/ ); (3) when the target QTL contained previously cloned genes for elements, the known genes were first regarded as the most likely candidate genes of corresponding QTLs; (4) genes homologous to cloned genes that have been reported to be associated with element accumulation- or tolerance-related traits in rice; (5) target genes associated with heavy metals in Gene Ontology (GO) annotation analysis; (6) for the QTLs identified for Cd, their expression changes before and after Cd treatment were obtained and calculated from the Rice RNA-seq Database ( Article Title: Genome-wide association study of rice (Oryza sativa L.) inflorescence architecture. Article Snippet: The expression data for panicle (young panicle-milky stage; R6 flowering stage) representing reproductive tissues and stem (three-leaf stage), representing vegetative tissues, was obtained from the Article Title: Conservation and divergence of OsGSTU9 and OsGSTU19 in cadmium detoxification and accumulation in rice. Article Snippet: • The tau GSTs are likely evolved from streptophyte algae, and OsGSTU9 and OsGSTU19 are highly homologous.. • Root preferentially expressed OsGSTU9 and OsGSTU19 are differentially upregulated in rice root sections under Cd Article Title: Genetic mapping of regions associated with root system architecture in rice using MutMap QTL-seq. Article Snippet: The root system architecture is an important complex trait in rice.. With changing climatic conditions and soil nutrient deficiencies, there is an immediate need to breed nutrient-use-efficient rice varieties with robust root system architectural (RSA) traits.. To map the genomic regions associated with crucial component traits of RSA viz. root length and root volume, a biparental F2 mapping population was developed using TI-128, an Ethyl Methane Sulphonate (EMS) mutant of a mega variety BPT-5204 having high root length (RL) and root volume (RV) with wild type BPT-5204. Article Title: Genome-Wide Analysis of the Histone Modification Gene ( HM ) Family and Expression Investigation during Anther Development in Rice ( Oryza sativa L.) Article Snippet: Expression data of OsHM gene family members under different abiotic stress conditions, including flooding stress, heat stress, drought stress, cold stress, and salt stress were obtained from rice RNA-seq database |